Wall clock time and date at job start Tue Mar 31 2020 05:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47209 * 2 1 4 4 H 1.08999 * 110.53671 * 52.38615 * 3 2 1 5 5 C 1.54265 * 110.48413 * 289.77152 * 3 2 1 6 6 C 1.53872 * 106.59766 * 217.71171 * 5 3 2 7 7 C 1.54757 * 106.65180 * 0.02562 * 6 5 3 8 8 C 1.54887 * 103.96441 * 23.57130 * 7 6 5 9 9 H 1.09002 * 110.75856 * 80.48162 * 8 7 6 10 10 N 1.46503 * 110.75691 * 203.66915 * 8 7 6 11 11 C 1.34779 * 119.99958 * 271.06534 * 10 8 7 12 12 O 1.21353 * 119.99873 * 359.97438 * 11 10 8 13 13 C 1.49445 * 120.00149 * 180.02562 * 11 10 8 14 14 O 1.21353 * 119.99978 * 359.97438 * 13 11 10 15 15 N 1.34779 * 120.00149 * 179.97438 * 13 11 10 16 16 C 1.46494 * 119.99842 * 179.97438 * 15 13 11 17 17 C 1.53005 * 109.47050 * 179.97438 * 16 15 13 18 18 C 1.50693 * 109.47264 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00212 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00081 * 180.02562 * 18 17 16 21 21 N 1.31511 * 119.99794 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00019 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47169 * 60.00016 * 22 20 18 24 24 H 1.48503 * 109.47031 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47102 * 299.99515 * 22 20 18 26 26 H 1.08997 * 109.46928 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47537 * 300.00332 * 1 2 3 28 28 H 1.08999 * 109.46906 * 60.00189 * 1 2 3 29 29 H 1.08999 * 109.47537 * 239.99668 * 2 1 3 30 30 H 1.08999 * 109.46906 * 119.99811 * 2 1 3 31 31 H 1.08995 * 110.03379 * 336.99668 * 5 3 2 32 32 H 1.09005 * 110.03127 * 98.37880 * 5 3 2 33 33 H 1.08996 * 110.03395 * 119.28918 * 6 5 3 34 34 H 1.09008 * 110.02794 * 240.66973 * 6 5 3 35 35 H 1.08998 * 110.50261 * 265.01092 * 7 6 5 36 36 H 1.09001 * 110.68900 * 142.21812 * 7 6 5 37 37 H 0.96999 * 119.99803 * 91.06177 * 10 8 7 38 38 H 0.96996 * 119.99503 * 359.97438 * 15 13 11 39 39 H 1.09000 * 109.47220 * 299.99574 * 16 15 13 40 40 H 1.08996 * 109.47349 * 59.99631 * 16 15 13 41 41 H 1.09000 * 109.46955 * 299.99973 * 17 16 15 42 42 H 1.08996 * 109.47153 * 59.99747 * 17 16 15 43 43 H 0.97007 * 119.99762 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5802 2.0107 0.8086 5 6 1.7591 2.1145 -1.3599 6 6 2.9738 3.0072 -1.6683 7 6 3.9548 2.8466 -0.4823 8 6 3.5837 1.4714 0.1261 9 1 4.0336 0.6610 -0.4476 10 7 3.9911 1.3983 1.5314 11 6 5.2248 0.9617 1.8536 12 8 5.9980 0.6287 0.9796 13 6 5.6402 0.8867 3.2872 14 8 4.8669 1.2193 4.1612 15 7 6.8738 0.4496 3.6094 16 6 7.2811 0.3766 5.0147 17 6 8.7157 -0.1481 5.1032 18 6 9.1345 -0.2238 6.5488 19 1 8.4466 0.0730 7.3266 20 6 10.3964 -0.6710 6.8784 21 7 11.2343 -1.0320 5.9313 22 14 10.9159 -0.7642 8.6704 23 1 10.0072 -1.6830 9.4020 24 1 12.3082 -1.2736 8.7563 25 1 10.8451 0.5892 9.2773 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6466 1.3563 -2.1348 32 1 0.8555 2.7209 -1.2972 33 1 3.4508 2.6824 -2.5930 34 1 2.6600 4.0475 -1.7559 35 1 3.8032 3.6406 0.2489 36 1 4.9866 2.8423 -0.8337 37 1 3.3729 1.6642 2.2300 38 1 7.4918 0.1834 2.9108 39 1 7.2291 1.3700 5.4602 40 1 6.6142 -0.2978 5.5517 41 1 8.7673 -1.1416 4.6579 42 1 9.3829 0.5260 4.5661 43 1 12.1220 -1.3470 6.1632 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323707180.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:43 Heat of formation + Delta-G solvation = -108.079157 kcal Electronic energy + Delta-G solvation = -21813.535336 eV Core-core repulsion = 18471.181462 eV Total energy + Delta-G solvation = -3342.353874 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.58275 -39.12427 -37.85121 -35.23595 -34.02326 -33.34264 -32.81572 -29.82090 -28.30494 -27.93112 -25.53501 -23.70159 -22.74844 -21.11414 -20.81616 -20.59163 -19.71601 -18.13670 -17.04771 -16.47182 -15.85658 -15.71583 -15.52237 -14.84687 -14.67270 -14.50095 -14.32979 -13.83774 -13.58375 -13.41191 -13.32713 -12.91739 -12.62223 -12.31456 -12.14161 -11.77187 -11.53010 -11.47545 -11.24128 -11.14789 -11.04506 -10.91118 -10.80919 -10.72670 -10.68359 -10.38591 -9.79036 -9.44364 -9.26235 -9.17968 -8.68609 -8.41264 -6.09864 -4.13662 1.63507 2.56414 3.30750 3.34913 3.37645 3.44421 3.87478 4.13579 4.26343 4.40154 4.43742 4.77400 4.80732 4.89331 5.00047 5.12636 5.13843 5.21853 5.25308 5.26897 5.33681 5.47886 5.61826 5.68460 5.74228 5.77284 5.87351 5.91755 5.95144 6.06360 6.18649 6.24311 6.28164 6.60532 6.70137 7.10344 7.47508 7.58254 7.69399 7.87372 7.95705 8.22073 8.35280 8.91762 9.51175 11.01609 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036772 B = 0.002643 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.275566 B =10591.614784 C =10919.904289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.098 4.098 4 H 0.082 0.918 5 C -0.116 4.116 6 C -0.123 4.123 7 C -0.137 4.137 8 C 0.141 3.859 9 H 0.100 0.900 10 N -0.698 5.698 11 C 0.509 3.491 12 O -0.520 6.520 13 C 0.496 3.504 14 O -0.534 6.534 15 N -0.686 5.686 16 C 0.119 3.881 17 C 0.011 3.989 18 C -0.524 4.524 19 H 0.060 0.940 20 C 0.060 3.940 21 N -0.893 5.893 22 Si 0.898 3.102 23 H -0.275 1.275 24 H -0.287 1.287 25 H -0.275 1.275 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.412 0.588 38 H 0.410 0.590 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.025 0.975 42 H 0.025 0.975 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.043 5.779 -15.616 26.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.117 4.117 4 H 0.101 0.899 5 C -0.154 4.154 6 C -0.161 4.161 7 C -0.176 4.176 8 C 0.036 3.964 9 H 0.118 0.882 10 N -0.351 5.351 11 C 0.290 3.710 12 O -0.395 6.395 13 C 0.276 3.724 14 O -0.412 6.412 15 N -0.337 5.337 16 C -0.003 4.003 17 C -0.026 4.026 18 C -0.563 4.563 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.531 5.531 22 Si 0.726 3.274 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.201 1.201 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.248 0.752 38 H 0.246 0.754 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.043 0.957 42 H 0.043 0.957 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.820 5.688 -15.630 25.875 hybrid contribution 0.420 -0.059 0.957 1.047 sum -19.400 5.629 -14.673 24.967 Atomic orbital electron populations 1.21772 0.95595 1.01690 1.01823 1.21597 0.96062 0.95476 1.02547 1.22299 0.93807 0.96942 0.98673 0.89944 1.22150 0.98239 0.98781 0.96220 1.22155 0.95648 0.99992 0.98280 1.22849 1.00049 0.96957 0.97761 1.22163 0.94316 0.98601 0.81304 0.88244 1.45746 1.14902 1.65499 1.08951 1.20463 0.82648 0.77915 0.89987 1.90751 1.51648 1.46979 1.50154 1.20012 0.83736 0.80022 0.88646 1.90727 1.52115 1.48631 1.49772 1.46232 1.13570 1.62196 1.11693 1.21930 0.99437 1.01306 0.77627 1.19348 0.88121 0.96911 0.98234 1.20977 0.99088 1.44591 0.91630 0.92219 1.25003 0.96494 0.95059 0.97704 1.69952 1.07140 1.43681 1.32326 0.86553 0.77573 0.78550 0.84735 1.20097 1.21225 1.20094 0.92748 0.92690 0.92667 0.91645 0.91625 0.91288 0.91437 0.91515 0.91561 0.91052 0.90803 0.75210 0.75397 0.91886 0.91884 0.95670 0.95673 0.92707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.79 37.16 0.36 -0.58 16 2 C -0.12 -0.87 5.32 -26.73 -0.14 -1.01 16 3 C -0.10 -0.71 2.47 -88.95 -0.22 -0.93 16 4 H 0.08 0.57 8.02 -51.93 -0.42 0.15 16 5 C -0.12 -0.71 5.69 -25.61 -0.15 -0.86 16 6 C -0.12 -0.83 6.82 -25.35 -0.17 -1.00 16 7 C -0.14 -1.22 6.55 -24.81 -0.16 -1.38 16 8 C 0.14 1.35 2.63 -65.93 -0.17 1.17 16 9 H 0.10 1.09 7.54 -51.93 -0.39 0.70 16 10 N -0.70 -8.04 5.19 -52.30 -0.27 -8.31 16 11 C 0.51 7.64 7.89 -11.59 -0.09 7.55 16 12 O -0.52 -8.80 16.16 5.49 0.09 -8.71 16 13 C 0.50 8.60 7.89 -11.59 -0.09 8.51 16 14 O -0.53 -10.14 16.48 5.49 0.09 -10.05 16 15 N -0.69 -12.62 5.55 -60.73 -0.34 -12.95 16 16 C 0.12 2.49 5.61 -4.04 -0.02 2.47 16 17 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 18 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 19 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 22 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.30 7.62 -51.93 -0.40 -0.09 16 29 H 0.06 0.47 7.95 -51.93 -0.41 0.06 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.40 7.71 -51.93 -0.40 0.00 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.41 4.31 8.02 -40.82 -0.33 3.98 16 38 H 0.41 7.21 7.94 -40.82 -0.32 6.89 16 39 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 356.41 15.07 5.37 5.37 Total: -1.00 -30.71 356.41 -8.04 -38.74 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -7.28 Total: 4.20 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -1.41 Total: 0.88 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: 0.13 Total: -46.73 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: 0.18 Total: -18.76 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.71 -8.04 -38.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323707180.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.334 kcal (2) G-P(sol) polarization free energy of solvation -30.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds