Wall clock time and date at job start Tue Mar 31 2020 05:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47140 * 2 1 4 4 H 1.08996 * 110.54094 * 52.38787 * 3 2 1 5 5 C 1.54885 * 110.48895 * 289.77155 * 3 2 1 6 6 C 1.54883 * 102.75228 * 203.38078 * 5 3 2 7 7 C 1.54370 * 104.21642 * 37.92808 * 6 5 3 8 8 C 1.53874 * 106.54523 * 336.42322 * 7 6 5 9 9 H 1.08993 * 110.03367 * 240.65288 * 8 7 6 10 10 N 1.46503 * 110.03171 * 119.26701 * 8 7 6 11 11 C 1.34779 * 119.99606 * 87.09673 * 10 8 7 12 12 O 1.21353 * 119.99787 * 359.97438 * 11 10 8 13 13 C 1.49450 * 119.99981 * 180.02562 * 11 10 8 14 14 O 1.21345 * 119.99730 * 359.97438 * 13 11 10 15 15 N 1.34779 * 119.99981 * 180.02562 * 13 11 10 16 16 C 1.46499 * 119.99872 * 180.02562 * 15 13 11 17 17 C 1.53000 * 109.46840 * 180.02562 * 16 15 13 18 18 C 1.50703 * 109.46912 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99776 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00001 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00114 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99955 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46999 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46979 * 120.00420 * 22 20 18 25 25 H 1.48498 * 109.46942 * 240.00334 * 22 20 18 26 26 H 1.09001 * 109.46904 * 59.99857 * 1 2 3 27 27 H 1.08998 * 109.46911 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46720 * 300.00178 * 1 2 3 29 29 H 1.08999 * 109.47110 * 240.00172 * 2 1 3 30 30 H 1.09001 * 109.46904 * 120.00143 * 2 1 3 31 31 H 1.09001 * 110.76047 * 321.69924 * 5 3 2 32 32 H 1.09003 * 110.75402 * 85.06241 * 5 3 2 33 33 H 1.09007 * 110.48665 * 156.62670 * 6 5 3 34 34 H 1.09002 * 110.48497 * 279.26186 * 6 5 3 35 35 H 1.09002 * 110.06815 * 217.15300 * 7 6 5 36 36 H 1.09001 * 110.04853 * 95.68551 * 7 6 5 37 37 H 0.96991 * 120.00647 * 267.09559 * 10 8 7 38 38 H 0.97000 * 119.99708 * 359.97438 * 15 13 11 39 39 H 1.09002 * 109.47391 * 59.99686 * 16 15 13 40 40 H 1.09001 * 109.46813 * 299.99742 * 16 15 13 41 41 H 1.09001 * 109.47194 * 299.99493 * 17 16 15 42 42 H 1.08992 * 109.47399 * 59.99666 * 17 16 15 43 43 H 0.97000 * 120.00354 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5802 2.0107 0.8085 5 6 1.7580 2.1172 -1.3653 6 6 2.8154 3.2479 -1.4128 7 6 4.0713 2.6197 -0.7716 8 6 3.5773 1.4716 0.1260 9 1 3.8637 1.6572 1.1611 10 7 4.1424 0.1993 -0.3303 11 6 5.3477 -0.2026 0.1194 12 8 5.9650 0.4897 0.9019 13 6 5.9244 -1.5003 -0.3464 14 8 5.3073 -2.1923 -1.1292 15 7 7.1295 -1.9024 0.1037 16 6 7.6951 -3.1741 -0.3534 17 6 9.0594 -3.3911 0.3041 18 6 9.6410 -4.6997 -0.1656 19 1 9.0924 -5.3148 -0.8636 20 6 10.8737 -5.1111 0.2950 21 7 11.5419 -4.3619 1.1445 22 14 11.5942 -6.7335 -0.2867 23 1 10.6517 -7.3826 -1.2330 24 1 12.8883 -6.4834 -0.9709 25 1 11.8156 -7.6237 0.8810 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.9091 1.4125 -2.1831 32 1 0.7495 2.5300 -1.3912 33 1 3.0178 3.5380 -2.4439 34 1 2.4807 4.1078 -0.8324 35 1 4.5966 3.3630 -0.1718 36 1 4.7314 2.2303 -1.5466 37 1 3.6491 -0.3539 -0.9559 38 1 7.6226 -1.3493 0.7297 39 1 7.8129 -3.1510 -1.4368 40 1 7.0257 -3.9892 -0.0781 41 1 9.7290 -2.5761 0.0292 42 1 8.9412 -3.4145 1.3874 43 1 12.4093 -4.6511 1.4683 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323707183.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:46 Heat of formation + Delta-G solvation = -101.391923 kcal Electronic energy + Delta-G solvation = -22035.076257 eV Core-core repulsion = 18693.012364 eV Total energy + Delta-G solvation = -3342.063893 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.70330 -39.18997 -37.81159 -35.19365 -33.72509 -33.48739 -32.80931 -29.81985 -28.33086 -27.95115 -25.53391 -23.61289 -23.11528 -21.09827 -20.83105 -20.34285 -19.58687 -18.31142 -16.86447 -16.36461 -15.78065 -15.73433 -15.58527 -14.86307 -14.72780 -14.66199 -14.45709 -14.05499 -13.54094 -13.38467 -13.20204 -12.86503 -12.46144 -12.32734 -12.07060 -11.68773 -11.43475 -11.38024 -11.22055 -11.20320 -11.07585 -10.90657 -10.87069 -10.69848 -10.64957 -10.40351 -9.78430 -9.42721 -9.28285 -9.16580 -8.68631 -8.41959 -6.10278 -4.13892 1.64720 2.58705 3.27912 3.35533 3.40138 3.45520 3.90187 4.11898 4.25942 4.40343 4.42311 4.77564 4.85122 4.90922 4.97819 5.13791 5.21241 5.22338 5.26697 5.32739 5.35849 5.51349 5.58010 5.63952 5.75912 5.77547 5.87558 5.93942 5.96566 6.07408 6.18817 6.24351 6.30566 6.60738 6.70304 7.11711 7.47912 7.58137 7.70224 7.87358 7.96781 8.22130 8.35624 8.92038 9.51105 11.01287 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034575 B = 0.002785 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.644551 B =10052.599335 C =10459.877755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.099 4.099 4 H 0.089 0.911 5 C -0.121 4.121 6 C -0.124 4.124 7 C -0.136 4.136 8 C 0.141 3.859 9 H 0.094 0.906 10 N -0.698 5.698 11 C 0.507 3.493 12 O -0.521 6.521 13 C 0.496 3.504 14 O -0.535 6.535 15 N -0.686 5.686 16 C 0.119 3.881 17 C 0.011 3.989 18 C -0.523 4.523 19 H 0.061 0.939 20 C 0.059 3.941 21 N -0.892 5.892 22 Si 0.897 3.103 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.283 1.283 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.411 0.589 38 H 0.410 0.590 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.025 0.975 42 H 0.025 0.975 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.052 14.504 -2.939 25.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.117 4.117 4 H 0.107 0.893 5 C -0.159 4.159 6 C -0.162 4.162 7 C -0.175 4.175 8 C 0.037 3.963 9 H 0.112 0.888 10 N -0.354 5.354 11 C 0.288 3.712 12 O -0.396 6.396 13 C 0.276 3.724 14 O -0.413 6.413 15 N -0.337 5.337 16 C -0.003 4.003 17 C -0.027 4.027 18 C -0.561 4.561 19 H 0.079 0.921 20 C -0.143 4.143 21 N -0.531 5.531 22 Si 0.725 3.275 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.209 1.209 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.250 0.750 38 H 0.246 0.754 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.043 0.957 42 H 0.043 0.957 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.849 14.488 -2.827 25.546 hybrid contribution 0.592 -0.828 -0.216 1.040 sum -20.257 13.660 -3.044 24.622 Atomic orbital electron populations 1.21766 0.95439 1.01812 1.01757 1.21545 0.96161 0.95590 1.02540 1.22344 0.93498 0.97066 0.98834 0.89284 1.22622 0.98969 0.97571 0.96690 1.22375 0.95016 0.97927 1.00874 1.22637 0.98049 0.97480 0.99331 1.21727 0.92584 0.82595 0.99411 0.88838 1.46018 1.19159 1.22692 1.47500 1.20477 0.82202 0.86958 0.81578 1.90749 1.59635 1.55649 1.33572 1.20025 0.83191 0.86411 0.82806 1.90722 1.60317 1.55684 1.34555 1.46235 1.17914 1.23950 1.45603 1.21928 0.97272 0.81716 0.99374 1.19360 0.88930 0.97939 0.96461 1.21056 1.03268 1.04572 1.27227 0.92114 1.25006 0.96926 0.97460 0.94917 1.69968 1.13955 1.37651 1.31513 0.86445 0.79043 0.83385 0.78618 1.19573 1.20919 1.20912 0.92599 0.92618 0.92778 0.91619 0.91426 0.91172 0.91218 0.91466 0.91448 0.90865 0.91004 0.75006 0.75402 0.91896 0.91887 0.95667 0.95660 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.79 37.16 0.36 -0.59 16 2 C -0.12 -0.91 4.46 -26.73 -0.12 -1.03 16 3 C -0.10 -0.70 2.81 -88.96 -0.25 -0.95 16 4 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 5 C -0.12 -0.77 5.67 -24.74 -0.14 -0.91 16 6 C -0.12 -0.84 6.83 -25.02 -0.17 -1.01 16 7 C -0.14 -1.22 6.60 -25.56 -0.17 -1.39 16 8 C 0.14 1.35 3.10 -66.81 -0.21 1.14 16 9 H 0.09 1.00 7.59 -51.93 -0.39 0.61 16 10 N -0.70 -8.10 4.35 -53.15 -0.23 -8.33 16 11 C 0.51 7.63 7.88 -11.58 -0.09 7.54 16 12 O -0.52 -8.83 16.14 5.49 0.09 -8.74 16 13 C 0.50 8.62 7.89 -11.58 -0.09 8.53 16 14 O -0.53 -10.15 16.48 5.50 0.09 -10.06 16 15 N -0.69 -12.64 5.55 -60.73 -0.34 -12.97 16 16 C 0.12 2.50 5.61 -4.04 -0.02 2.48 16 17 C 0.01 0.26 5.09 -27.88 -0.14 0.12 16 18 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 19 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 22 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H 0.05 0.32 7.55 -51.93 -0.39 -0.07 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.52 6.40 -51.93 -0.33 0.18 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.47 7.97 -51.93 -0.41 0.06 16 32 H 0.07 0.37 8.06 -51.93 -0.42 -0.04 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.74 7.92 -51.93 -0.41 0.33 16 37 H 0.41 4.46 6.00 -40.82 -0.24 4.21 16 38 H 0.41 7.23 7.94 -40.82 -0.32 6.91 16 39 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 352.02 15.07 5.30 5.30 Total: -1.00 -30.69 352.02 -7.94 -38.63 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -7.12 Total: 4.58 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -1.45 Total: 0.75 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: 0.17 Total: -46.76 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: 0.18 Total: -18.79 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.69 -7.94 -38.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323707183.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.758 kcal (2) G-P(sol) polarization free energy of solvation -30.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds