Wall clock time and date at job start Tue Mar 31 2020 05:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52993 * 109.46815 * 2 1 4 4 H 1.08997 * 110.05961 * 306.41561 * 3 2 1 5 5 C 1.54266 * 110.03268 * 67.83828 * 3 2 1 6 6 C 1.54896 * 104.19817 * 142.88974 * 5 3 2 7 7 C 1.55007 * 102.75343 * 322.04662 * 6 5 3 8 8 C 1.53880 * 110.03140 * 184.99774 * 3 2 1 9 9 H 1.09005 * 110.03053 * 0.05492 * 8 3 2 10 10 N 1.46499 * 110.03336 * 121.43136 * 8 3 2 11 11 C 1.34776 * 120.00376 * 204.31780 * 10 8 3 12 12 O 1.21349 * 119.99545 * 359.97438 * 11 10 8 13 13 C 1.49450 * 120.00295 * 179.97438 * 11 10 8 14 14 O 1.21349 * 119.99535 * 359.97438 * 13 11 10 15 15 N 1.34776 * 120.00136 * 179.97438 * 13 11 10 16 16 C 1.46496 * 119.99846 * 180.02562 * 15 13 11 17 17 C 1.53006 * 109.46995 * 180.02562 * 16 15 13 18 18 C 1.50698 * 109.47184 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99819 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00046 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00192 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99979 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.47261 * 60.00310 * 22 20 18 25 25 H 1.48500 * 109.47454 * 300.00304 * 22 20 18 26 26 H 1.09000 * 109.46875 * 299.99553 * 1 2 3 27 27 H 1.09000 * 109.46704 * 59.99688 * 1 2 3 28 28 H 1.08997 * 109.47152 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46591 * 240.00040 * 2 1 3 30 30 H 1.09000 * 109.46704 * 120.00311 * 2 1 3 31 31 H 1.09001 * 110.48635 * 261.56836 * 5 3 2 32 32 H 1.09001 * 110.49086 * 24.07854 * 5 3 2 33 33 H 1.08999 * 110.75235 * 80.36793 * 6 5 3 34 34 H 1.09002 * 110.75630 * 203.74068 * 6 5 3 35 35 H 1.09006 * 110.50399 * 279.29795 * 7 6 5 36 36 H 1.09000 * 110.52447 * 156.61729 * 7 6 5 37 37 H 0.96998 * 119.99822 * 24.31067 * 10 8 3 38 38 H 0.96998 * 119.99962 * 0.02562 * 15 13 11 39 39 H 1.09001 * 109.47001 * 60.00345 * 16 15 13 40 40 H 1.09001 * 109.47464 * 299.99786 * 16 15 13 41 41 H 1.09001 * 109.47002 * 60.00299 * 17 16 15 42 42 H 1.08993 * 109.46955 * 299.99862 * 17 16 15 43 43 H 0.97001 * 119.99934 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5915 1.9975 -0.8239 5 6 1.7007 2.1229 1.3422 6 6 2.9291 3.0200 1.6347 7 6 4.1135 2.1488 1.1440 8 6 3.5735 1.4594 -0.1259 9 1 3.9543 0.4399 -0.1880 10 7 3.9710 2.2164 -1.3155 11 6 5.1599 1.9741 -1.9025 12 8 5.9012 1.1292 -1.4452 13 6 5.5651 2.7460 -3.1163 14 8 4.8235 3.5906 -3.5738 15 7 6.7541 2.5041 -3.7029 16 6 7.1516 3.2611 -4.8925 17 6 8.5333 2.7948 -5.3557 18 6 8.9418 3.5731 -6.5798 19 1 8.2822 4.3254 -6.9864 20 6 10.1582 3.3255 -7.1799 21 7 10.9616 2.4098 -6.6845 22 14 10.6649 4.2907 -8.6968 23 1 12.0059 3.8381 -9.1465 24 1 10.7149 5.7382 -8.3686 25 1 9.6767 4.0630 -9.7815 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8901 30 1 1.8934 -0.5139 0.8900 31 1 0.7999 2.7291 1.2457 32 1 1.5750 1.3770 2.1271 33 1 2.8722 3.9494 1.0680 34 1 3.0146 3.2219 2.7024 35 1 4.3795 1.4069 1.8970 36 1 4.9733 2.7738 0.9025 37 1 3.3786 2.8920 -1.6808 38 1 7.3467 1.8287 -3.3375 39 1 7.1882 4.3235 -4.6516 40 1 6.4263 3.0938 -5.6888 41 1 8.4962 1.7324 -5.5968 42 1 9.2588 2.9617 -4.5596 43 1 10.6986 1.9088 -5.8966 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323707184.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:49 Heat of formation + Delta-G solvation = -109.929873 kcal Electronic energy + Delta-G solvation = -21871.205906 eV Core-core repulsion = 18528.771780 eV Total energy + Delta-G solvation = -3342.434127 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.70227 -39.23869 -37.91135 -35.38682 -34.16543 -33.23704 -32.97194 -29.65073 -28.39672 -27.97591 -25.33290 -23.68157 -22.66296 -21.51789 -20.99854 -20.38682 -19.81823 -18.26408 -16.95881 -16.71197 -16.02925 -15.91594 -15.42874 -15.07530 -14.99726 -14.37323 -14.24000 -13.78148 -13.68294 -13.57197 -13.16508 -13.02123 -12.31929 -12.29947 -12.12952 -11.74915 -11.70746 -11.54201 -11.37807 -11.26732 -11.06715 -11.02301 -10.95001 -10.82187 -10.49789 -10.22421 -10.02212 -9.47174 -9.31350 -8.76685 -8.71239 -8.40234 -6.45491 -4.16318 1.56971 2.50638 3.37634 3.42208 3.43829 3.62632 3.83540 4.07773 4.22132 4.40881 4.49801 4.69775 4.77831 4.84556 4.93475 5.07562 5.17493 5.26939 5.27784 5.32009 5.32667 5.39988 5.55197 5.63249 5.67307 5.75106 5.77954 5.87424 5.94067 6.01934 6.02628 6.10938 6.26992 6.48257 6.56612 7.01926 7.20126 7.29669 7.60564 7.87445 8.03892 8.25037 8.35451 8.77293 9.55996 10.95613 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.038390 B = 0.002612 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.190230 B =10715.895298 C =10802.462024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.099 4.099 4 H 0.082 0.918 5 C -0.117 4.117 6 C -0.127 4.127 7 C -0.134 4.134 8 C 0.140 3.860 9 H 0.095 0.905 10 N -0.698 5.698 11 C 0.508 3.492 12 O -0.521 6.521 13 C 0.497 3.503 14 O -0.532 6.532 15 N -0.689 5.689 16 C 0.126 3.874 17 C -0.002 4.002 18 C -0.604 4.604 19 H 0.054 0.946 20 C 0.017 3.983 21 N -0.908 5.908 22 Si 1.072 2.928 23 H -0.282 1.282 24 H -0.287 1.287 25 H -0.287 1.287 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.411 0.589 38 H 0.409 0.591 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.003 -2.711 17.364 26.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.118 4.118 4 H 0.100 0.900 5 C -0.155 4.155 6 C -0.164 4.164 7 C -0.173 4.173 8 C 0.036 3.964 9 H 0.113 0.887 10 N -0.351 5.351 11 C 0.289 3.711 12 O -0.396 6.396 13 C 0.277 3.723 14 O -0.410 6.410 15 N -0.340 5.340 16 C 0.005 3.995 17 C -0.039 4.039 18 C -0.643 4.643 19 H 0.072 0.928 20 C -0.187 4.187 21 N -0.544 5.544 22 Si 0.900 3.100 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.213 1.213 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.247 0.753 38 H 0.245 0.755 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.756 -2.540 16.224 24.929 hybrid contribution -1.233 -0.182 1.130 1.682 sum -19.989 -2.722 17.354 26.611 Atomic orbital electron populations 1.21782 0.95513 1.01706 1.01940 1.21628 0.96158 0.95263 1.02429 1.22127 0.93506 0.97251 0.98951 0.90009 1.22455 0.98124 0.98633 0.96302 1.22557 0.94435 0.98321 1.01115 1.22808 0.98365 0.99395 0.96732 1.21809 0.94098 0.96468 0.84030 0.88698 1.45942 1.19126 1.40824 1.29251 1.20431 0.82365 0.83550 0.84757 1.90750 1.51572 1.32876 1.64396 1.20033 0.83317 0.84203 0.84795 1.90730 1.52110 1.33625 1.64560 1.46229 1.17782 1.40076 1.29894 1.21764 0.98821 0.95073 0.83884 1.19482 0.90057 0.97179 0.97229 1.21850 1.06039 1.23531 1.12856 0.92794 1.25900 0.93056 0.97176 1.02552 1.70795 1.38323 1.21914 1.23363 0.83496 0.76306 0.75372 0.74857 1.20702 1.21299 1.21304 0.92555 0.92677 0.92707 0.91707 0.91546 0.91361 0.91111 0.91335 0.91322 0.90514 0.90999 0.75260 0.75513 0.91712 0.91711 0.96570 0.96575 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.77 37.16 0.36 -0.53 16 2 C -0.12 -0.79 5.06 -26.73 -0.14 -0.92 16 3 C -0.10 -0.71 2.70 -89.50 -0.24 -0.95 16 4 H 0.08 0.59 7.61 -51.93 -0.40 0.20 16 5 C -0.12 -0.71 5.53 -25.07 -0.14 -0.85 16 6 C -0.13 -0.89 6.91 -24.67 -0.17 -1.06 16 7 C -0.13 -1.19 6.54 -25.01 -0.16 -1.35 16 8 C 0.14 1.33 2.89 -66.81 -0.19 1.14 16 9 H 0.09 1.02 7.12 -51.93 -0.37 0.65 16 10 N -0.70 -8.04 5.03 -53.15 -0.27 -8.30 16 11 C 0.51 7.61 7.88 -11.59 -0.09 7.52 16 12 O -0.52 -8.76 16.14 5.50 0.09 -8.67 16 13 C 0.50 8.62 7.89 -11.59 -0.09 8.53 16 14 O -0.53 -10.13 16.48 5.50 0.09 -10.04 16 15 N -0.69 -12.67 5.55 -60.73 -0.34 -13.00 16 16 C 0.13 2.68 5.61 -4.04 -0.02 2.66 16 17 C 0.00 -0.05 4.40 -27.88 -0.12 -0.17 16 18 C -0.60 -16.93 9.11 -34.44 -0.31 -17.24 16 19 H 0.05 1.48 7.74 -52.48 -0.41 1.08 16 20 C 0.02 0.50 5.46 -17.82 -0.10 0.40 16 21 N -0.91 -27.44 13.65 55.43 0.76 -26.68 16 22 Si 1.07 24.99 29.90 -169.99 -5.08 19.90 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 26 H 0.06 0.29 7.51 -51.93 -0.39 -0.10 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.42 8.00 -51.93 -0.42 0.00 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.39 7.76 -51.93 -0.40 -0.01 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.76 8.04 -51.93 -0.42 0.35 16 37 H 0.41 4.33 7.78 -40.82 -0.32 4.01 16 38 H 0.41 7.14 7.94 -40.82 -0.32 6.81 16 39 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.02 0.41 8.01 -51.93 -0.42 0.00 16 42 H 0.02 0.41 8.01 -51.93 -0.42 0.00 16 43 H 0.27 8.04 7.22 -40.82 -0.29 7.75 16 LS Contribution 353.85 15.07 5.33 5.33 Total: -1.00 -31.61 353.85 -8.00 -39.62 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -7.17 Total: 4.68 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -1.42 Total: -2.83 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: 0.15 Total: -47.99 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: 0.18 Total: -18.72 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -5.08 Total: 19.90 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.61 -8.00 -39.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323707184.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.313 kcal (2) G-P(sol) polarization free energy of solvation -31.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds