Wall clock time and date at job start Tue Mar 31 2020 05:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53008 * 109.47297 * 2 1 4 4 H 1.08999 * 110.53235 * 307.61662 * 3 2 1 5 5 C 1.54890 * 110.48478 * 70.22726 * 3 2 1 6 6 C 1.54887 * 102.74875 * 156.62357 * 5 3 2 7 7 C 1.54268 * 104.19445 * 322.05599 * 6 5 3 8 8 C 1.53872 * 106.59864 * 23.61041 * 7 6 5 9 9 H 1.09005 * 110.03463 * 119.32961 * 8 7 6 10 10 N 1.46499 * 110.03248 * 240.71587 * 8 7 6 11 11 C 1.34777 * 120.00065 * 273.54458 * 10 8 7 12 12 O 1.21353 * 119.99605 * 359.97438 * 11 10 8 13 13 C 1.49454 * 120.00164 * 180.02562 * 11 10 8 14 14 O 1.21343 * 119.99752 * 359.97438 * 13 11 10 15 15 N 1.34774 * 119.99586 * 180.02562 * 13 11 10 16 16 C 1.46499 * 119.99486 * 179.97438 * 15 13 11 17 17 C 1.53004 * 109.47198 * 179.97438 * 16 15 13 18 18 C 1.50700 * 109.47208 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99770 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00083 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00147 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00278 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47228 * 179.97438 * 22 20 18 24 24 H 1.48501 * 109.46793 * 300.00001 * 22 20 18 25 25 H 1.48500 * 109.47000 * 60.00094 * 22 20 18 26 26 H 1.09004 * 109.47174 * 180.02562 * 1 2 3 27 27 H 1.09011 * 109.47310 * 299.99783 * 1 2 3 28 28 H 1.08994 * 109.47536 * 59.99679 * 1 2 3 29 29 H 1.08994 * 109.47159 * 240.00085 * 2 1 3 30 30 H 1.09000 * 109.47669 * 119.99877 * 2 1 3 31 31 H 1.09001 * 110.75898 * 38.30457 * 5 3 2 32 32 H 1.09007 * 110.75175 * 274.93890 * 5 3 2 33 33 H 1.08999 * 110.48837 * 203.37455 * 6 5 3 34 34 H 1.09003 * 110.48549 * 80.73125 * 6 5 3 35 35 H 1.08991 * 110.03181 * 264.32393 * 7 6 5 36 36 H 1.09001 * 110.03110 * 142.89235 * 7 6 5 37 37 H 0.97000 * 119.99795 * 93.54834 * 10 8 7 38 38 H 0.96991 * 120.00732 * 359.97438 * 15 13 11 39 39 H 1.09000 * 109.47602 * 59.99571 * 16 15 13 40 40 H 1.08998 * 109.47492 * 299.99559 * 16 15 13 41 41 H 1.08994 * 109.47074 * 60.00190 * 17 16 15 42 42 H 1.08998 * 109.47285 * 300.00026 * 17 16 15 43 43 H 0.97005 * 119.99661 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5800 2.0107 -0.8085 5 6 1.7579 2.1172 1.3654 6 6 2.8153 3.2480 1.4128 7 6 4.0702 2.6197 0.7723 8 6 3.5772 1.4717 -0.1260 9 1 3.8642 1.6578 -1.1610 10 7 4.1423 0.1994 0.3302 11 6 5.3538 -0.1959 -0.1088 12 8 5.9762 0.5020 -0.8823 13 6 5.9301 -1.4941 0.3562 14 8 5.3074 -2.1920 1.1292 15 7 7.1417 -1.8890 -0.0825 16 6 7.7068 -3.1613 0.3737 17 6 9.0795 -3.3694 -0.2693 18 6 9.6611 -4.6779 0.2004 19 1 9.1069 -5.2991 0.8884 20 6 10.9006 -5.0820 -0.2482 21 7 11.5756 -4.3253 -1.0856 22 14 11.6213 -6.7042 0.3335 23 1 12.9535 -6.9061 -0.2905 24 1 11.7648 -6.6805 1.8114 25 1 10.7181 -7.8159 -0.0583 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.8932 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.9090 1.4125 2.1831 32 1 0.7494 2.5300 1.3912 33 1 3.0177 3.5381 2.4438 34 1 2.4806 4.1078 0.8324 35 1 4.7298 2.2302 1.5476 36 1 4.5957 3.3633 0.1731 37 1 3.6446 -0.3585 0.9482 38 1 7.6395 -1.3309 -0.7001 39 1 7.0438 -3.9773 0.0862 40 1 7.8123 -3.1439 1.4584 41 1 9.7427 -2.5536 0.0178 42 1 8.9737 -3.3870 -1.3540 43 1 11.2013 -3.4830 -1.3879 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323707187.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:53 Heat of formation + Delta-G solvation = -104.993761 kcal Electronic energy + Delta-G solvation = -22071.364740 eV Core-core repulsion = 18729.144659 eV Total energy + Delta-G solvation = -3342.220081 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.76549 -39.25597 -37.87745 -35.35823 -33.82499 -33.53285 -33.02674 -29.64870 -28.34771 -27.98436 -25.26743 -23.50320 -23.14358 -21.42761 -20.86375 -20.41507 -19.62563 -18.47707 -16.96981 -16.59220 -15.84477 -15.80808 -15.69041 -14.97924 -14.83416 -14.71644 -14.19151 -13.82508 -13.69560 -13.42086 -13.28284 -12.97367 -12.49603 -12.28943 -12.10576 -11.73667 -11.69891 -11.45962 -11.40996 -11.23729 -11.02293 -10.93608 -10.90427 -10.73144 -10.49777 -10.22434 -10.02237 -9.47043 -9.33082 -8.76576 -8.71225 -8.40226 -6.45512 -4.16357 1.57653 2.51869 3.38242 3.42162 3.43799 3.62611 3.83227 4.08172 4.22415 4.38648 4.49708 4.69881 4.81466 4.87850 4.94657 5.10444 5.18060 5.18699 5.29521 5.32670 5.32954 5.48250 5.54972 5.60904 5.73053 5.74572 5.84121 5.90803 5.93134 6.02644 6.04332 6.10968 6.25607 6.48335 6.56710 7.02914 7.20432 7.29703 7.61019 7.88051 8.04026 8.25257 8.35448 8.77287 9.56000 10.95595 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034552 B = 0.002795 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.177105 B =10017.219525 C =10428.784430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.098 4.098 4 H 0.089 0.911 5 C -0.121 4.121 6 C -0.124 4.124 7 C -0.136 4.136 8 C 0.141 3.859 9 H 0.093 0.907 10 N -0.698 5.698 11 C 0.507 3.493 12 O -0.521 6.521 13 C 0.497 3.503 14 O -0.533 6.533 15 N -0.689 5.689 16 C 0.126 3.874 17 C -0.002 4.002 18 C -0.604 4.604 19 H 0.054 0.946 20 C 0.018 3.982 21 N -0.908 5.908 22 Si 1.072 2.928 23 H -0.282 1.282 24 H -0.287 1.287 25 H -0.287 1.287 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.412 0.588 38 H 0.409 0.591 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.638 14.403 3.106 26.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.117 4.117 4 H 0.108 0.892 5 C -0.159 4.159 6 C -0.162 4.162 7 C -0.175 4.175 8 C 0.037 3.963 9 H 0.111 0.889 10 N -0.353 5.353 11 C 0.288 3.712 12 O -0.396 6.396 13 C 0.276 3.724 14 O -0.410 6.410 15 N -0.340 5.340 16 C 0.005 3.995 17 C -0.039 4.039 18 C -0.643 4.643 19 H 0.072 0.928 20 C -0.187 4.187 21 N -0.544 5.544 22 Si 0.900 3.100 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.213 1.213 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.250 0.750 38 H 0.245 0.755 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.280 13.390 2.957 24.481 hybrid contribution -1.302 1.061 0.130 1.684 sum -21.581 14.451 3.087 26.156 Atomic orbital electron populations 1.21764 0.95387 1.01836 1.01784 1.21546 0.96219 0.95582 1.02512 1.22346 0.93431 0.97081 0.98879 0.89242 1.22626 0.99000 0.97567 0.96660 1.22358 0.94996 0.97936 1.00899 1.22617 0.98085 0.97473 0.99320 1.21734 0.92633 0.82554 0.99383 0.88858 1.46025 1.18529 1.22638 1.48110 1.20440 0.82294 0.86936 0.81521 1.90749 1.59660 1.55328 1.33899 1.20036 0.83145 0.86491 0.82679 1.90726 1.60225 1.55319 1.34771 1.46226 1.17470 1.23833 1.46446 1.21762 0.96612 0.81810 0.99363 1.19480 0.90101 0.98317 0.96038 1.21853 1.05776 1.05208 1.31462 0.92789 1.25898 0.94087 1.04070 0.94611 1.70797 1.40086 1.13181 1.30335 0.83497 0.76268 0.74339 0.75941 1.20698 1.21298 1.21302 0.92602 0.92581 0.92751 0.91438 0.91634 0.91170 0.91178 0.91443 0.91416 0.91032 0.90860 0.74973 0.75515 0.91712 0.91714 0.96579 0.96574 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.79 37.15 0.36 -0.58 16 2 C -0.12 -0.90 4.46 -26.73 -0.12 -1.02 16 3 C -0.10 -0.70 2.81 -88.96 -0.25 -0.95 16 4 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 5 C -0.12 -0.76 5.67 -24.74 -0.14 -0.90 16 6 C -0.12 -0.83 6.83 -25.07 -0.17 -1.01 16 7 C -0.14 -1.21 6.59 -25.61 -0.17 -1.38 16 8 C 0.14 1.34 3.10 -66.81 -0.21 1.13 16 9 H 0.09 0.99 7.61 -51.93 -0.39 0.60 16 10 N -0.70 -8.04 4.37 -53.15 -0.23 -8.27 16 11 C 0.51 7.60 7.88 -11.58 -0.09 7.51 16 12 O -0.52 -8.77 16.15 5.49 0.09 -8.68 16 13 C 0.50 8.62 7.89 -11.58 -0.09 8.53 16 14 O -0.53 -10.11 16.48 5.50 0.09 -10.02 16 15 N -0.69 -12.66 5.55 -60.73 -0.34 -13.00 16 16 C 0.13 2.68 5.61 -4.04 -0.02 2.66 16 17 C 0.00 -0.05 4.40 -27.88 -0.12 -0.17 16 18 C -0.60 -16.94 9.11 -34.44 -0.31 -17.25 16 19 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 20 C 0.02 0.51 5.46 -17.82 -0.10 0.41 16 21 N -0.91 -27.44 13.65 55.43 0.76 -26.69 16 22 Si 1.07 24.98 29.90 -169.99 -5.08 19.90 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.32 7.56 -51.92 -0.39 -0.07 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.51 6.40 -51.93 -0.33 0.18 16 31 H 0.07 0.47 7.97 -51.93 -0.41 0.06 16 32 H 0.07 0.37 8.06 -51.92 -0.42 -0.05 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.73 7.92 -51.93 -0.41 0.32 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.41 4.43 5.97 -40.82 -0.24 4.19 16 38 H 0.41 7.14 7.94 -40.82 -0.32 6.82 16 39 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.02 0.41 8.01 -51.93 -0.42 -0.01 16 42 H 0.02 0.41 8.01 -51.93 -0.42 0.00 16 43 H 0.27 8.05 7.22 -40.82 -0.29 7.75 16 LS Contribution 350.69 15.07 5.28 5.28 Total: -1.00 -31.51 350.69 -7.93 -39.44 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -7.06 Total: 5.06 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -1.43 Total: -3.02 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: 0.19 Total: -47.96 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: 0.18 Total: -18.70 kcal Atomic # 14 Polarization: 24.98 SS G_CDS: -5.08 Total: 19.90 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.51 -7.93 -39.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323707187.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.556 kcal (2) G-P(sol) polarization free energy of solvation -31.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds