Wall clock time and date at job start Tue Mar 31 2020 05:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53009 * 109.46967 * 2 1 4 4 H 1.08991 * 110.91522 * 308.90224 * 3 2 1 5 5 C 1.55160 * 111.00399 * 184.99880 * 3 2 1 6 6 C 1.54316 * 102.94268 * 206.42607 * 5 3 2 7 7 N 1.47026 * 107.27365 * 22.19228 * 6 5 3 8 8 C 1.34771 * 125.65100 * 180.79395 * 7 6 5 9 9 O 1.21349 * 120.00233 * 180.02562 * 8 7 6 10 10 C 1.49457 * 119.99987 * 0.02830 * 8 7 6 11 11 O 1.21349 * 119.99780 * 359.97438 * 10 8 7 12 12 N 1.34771 * 119.99987 * 180.02562 * 10 8 7 13 13 C 1.46496 * 120.00089 * 179.97438 * 12 10 8 14 14 C 1.52997 * 109.47441 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47533 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47196 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00091 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99740 * 179.97438 * 16 15 14 19 19 N 1.31521 * 120.00060 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00286 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47271 * 89.99710 * 20 18 16 22 22 H 1.48500 * 109.47590 * 210.00021 * 20 18 16 23 23 H 1.48498 * 109.46933 * 330.00092 * 20 18 16 24 24 C 1.47425 * 108.70074 * 1.05989 * 7 6 5 25 25 H 1.09003 * 109.47400 * 60.00012 * 1 2 3 26 26 H 1.08999 * 109.47204 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47596 * 299.99892 * 1 2 3 28 28 H 1.08996 * 109.47596 * 240.00108 * 2 1 3 29 29 H 1.09003 * 109.47400 * 119.99988 * 2 1 3 30 30 H 1.08997 * 110.71793 * 88.05937 * 5 3 2 31 31 H 1.09002 * 110.71871 * 324.79283 * 5 3 2 32 32 H 1.09004 * 109.88447 * 262.78098 * 6 5 3 33 33 H 1.09000 * 109.88516 * 141.60887 * 6 5 3 34 34 H 0.97002 * 119.99843 * 359.97438 * 12 10 8 35 35 H 1.09008 * 109.47264 * 299.99730 * 13 12 10 36 36 H 1.08993 * 109.47471 * 59.99715 * 13 12 10 37 37 H 1.09007 * 109.46923 * 299.99652 * 14 13 12 38 38 H 1.09006 * 109.47725 * 59.99628 * 14 13 12 39 39 H 1.09007 * 109.46617 * 299.99698 * 15 14 13 40 40 H 1.08992 * 109.47053 * 59.99217 * 15 14 13 41 41 H 0.96996 * 119.99683 * 180.02562 * 19 18 16 42 42 H 1.09001 * 110.36478 * 94.71036 * 24 7 6 43 43 H 1.08998 * 110.36859 * 217.03414 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5668 2.0225 -0.7923 5 6 3.5857 1.4860 -0.1262 6 6 3.9507 2.8219 0.5545 7 7 2.8408 3.1716 1.4531 8 6 2.7694 4.2778 2.2196 9 8 1.8010 4.4645 2.9268 10 6 3.8827 5.2746 2.1987 11 8 4.8512 5.0877 1.4919 12 7 3.8115 6.3805 2.9657 13 6 4.9031 7.3574 2.9456 14 6 4.5749 8.5086 3.8984 15 6 5.7146 9.5292 3.8770 16 6 5.3910 10.6634 4.8149 17 1 4.4648 10.6572 5.3704 18 6 6.2773 11.7090 4.9639 19 7 5.9951 12.6986 5.7829 20 14 7.8789 11.7200 4.0026 21 1 7.6713 12.4075 2.7027 22 1 8.9191 12.4382 4.7818 23 1 8.3195 10.3230 3.7588 24 6 1.8218 2.1086 1.3815 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8871 1.4919 -1.1737 31 1 4.0394 0.6473 0.4020 32 1 4.0768 3.5996 -0.1988 33 1 4.8701 2.7065 1.1286 34 1 3.0375 6.5297 3.5309 35 1 5.8278 6.8756 3.2636 36 1 5.0248 7.7456 1.9345 37 1 3.6502 8.9906 3.5808 38 1 4.4535 8.1202 4.9096 39 1 6.6396 9.0474 4.1942 40 1 5.8356 9.9175 2.8658 41 1 6.6185 13.4344 5.8873 42 1 1.9738 1.3830 2.1807 43 1 0.8215 2.5372 1.4424 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324376462.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:30 Heat of formation + Delta-G solvation = -90.000351 kcal Electronic energy + Delta-G solvation = -21655.360353 eV Core-core repulsion = 18313.790435 eV Total energy + Delta-G solvation = -3341.569918 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.87289 -39.12765 -37.90542 -35.78554 -34.41065 -33.31167 -31.48028 -30.95914 -28.86997 -27.63114 -25.66352 -23.70634 -22.65389 -21.89513 -20.77725 -20.58586 -19.60323 -17.89368 -17.06690 -16.75294 -16.57915 -15.85922 -15.56337 -15.13277 -14.48152 -14.41464 -14.11398 -13.95531 -13.81974 -13.55437 -13.19832 -13.06452 -12.77449 -12.72683 -12.26028 -12.08027 -11.97116 -11.72079 -11.61362 -11.12004 -11.09247 -11.05234 -10.99237 -10.92014 -10.16425 -9.96998 -9.77996 -9.46562 -9.24119 -9.13097 -8.95196 -8.56376 -6.06735 -4.05694 1.39381 2.19950 3.17820 3.30209 3.37787 3.41317 3.42197 4.01893 4.17119 4.29763 4.43217 4.43616 4.74734 4.85343 4.87261 4.96878 5.05388 5.26865 5.28962 5.33620 5.44303 5.46046 5.51978 5.56903 5.58817 5.59257 5.62496 5.79153 5.82817 5.93131 5.95404 6.17411 6.38969 6.55334 6.73967 6.94141 7.19662 7.25692 7.33283 7.65645 7.74645 8.00969 8.49751 8.97416 9.55020 11.06463 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.047798 B = 0.002512 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.662303 B =11144.927549 C =11639.209746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.112 4.112 3 C -0.103 4.103 4 H 0.087 0.913 5 C -0.132 4.132 6 C 0.107 3.893 7 N -0.595 5.595 8 C 0.521 3.479 9 O -0.522 6.522 10 C 0.503 3.497 11 O -0.523 6.523 12 N -0.692 5.692 13 C 0.113 3.887 14 C -0.115 4.115 15 C -0.010 4.010 16 C -0.523 4.523 17 H 0.073 0.927 18 C 0.066 3.934 19 N -0.902 5.902 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.265 1.265 24 C 0.109 3.891 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.412 0.588 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.019 0.981 40 H 0.015 0.985 41 H 0.263 0.737 42 H 0.073 0.927 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.845 -26.804 -13.398 30.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.149 4.149 3 C -0.122 4.122 4 H 0.106 0.894 5 C -0.170 4.170 6 C -0.015 4.015 7 N -0.330 5.330 8 C 0.304 3.696 9 O -0.398 6.398 10 C 0.283 3.717 11 O -0.399 6.399 12 N -0.344 5.344 13 C -0.010 4.010 14 C -0.153 4.153 15 C -0.048 4.048 16 C -0.560 4.560 17 H 0.091 0.909 18 C -0.135 4.135 19 N -0.541 5.541 20 Si 0.708 3.292 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.189 1.189 24 C -0.013 4.013 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.248 0.752 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.038 0.962 40 H 0.033 0.967 41 H 0.073 0.927 42 H 0.091 0.909 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.583 -26.558 -13.388 30.694 hybrid contribution 0.534 0.295 -0.147 0.628 sum -7.049 -26.263 -13.535 30.375 Atomic orbital electron populations 1.21816 0.95498 1.01861 1.02183 1.21464 0.96180 0.94725 1.02580 1.22467 0.95957 0.96950 0.96876 0.89439 1.22817 0.95318 0.97128 1.01724 1.22199 0.89455 0.96702 0.93190 1.48251 1.22022 1.20280 1.42409 1.20030 0.87461 0.81793 0.80315 1.90767 1.33192 1.75863 1.39955 1.19910 0.87000 0.83089 0.81680 1.90737 1.32866 1.76112 1.40222 1.46005 1.24149 1.20739 1.43510 1.21833 0.88645 0.88976 1.01499 1.21745 1.01340 0.94454 0.97797 1.19503 0.93748 0.94321 0.97248 1.21090 1.06603 1.03641 1.24713 0.90932 1.25039 0.98207 0.95287 0.95009 1.69915 1.36921 1.10194 1.37059 0.86767 0.83651 0.78648 0.80163 1.20249 1.21364 1.18922 1.22438 0.92581 0.88954 0.97333 0.92579 0.92562 0.92446 0.91263 0.91498 0.89682 0.90326 0.90179 0.90251 0.75176 0.91149 0.91150 0.91820 0.91788 0.96248 0.96682 0.92684 0.90853 0.89985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.73 9.81 37.15 0.36 -0.37 16 2 C -0.11 -0.51 5.45 -26.73 -0.15 -0.66 16 3 C -0.10 -0.62 3.01 -88.46 -0.27 -0.89 16 4 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 5 C -0.13 -0.79 6.42 -24.90 -0.16 -0.95 16 6 C 0.11 1.00 5.49 -3.07 -0.02 0.98 16 7 N -0.59 -6.65 3.33 -171.02 -0.57 -7.22 16 8 C 0.52 7.26 7.91 -11.58 -0.09 7.16 16 9 O -0.52 -8.24 16.73 5.50 0.09 -8.15 16 10 C 0.50 7.52 7.86 -11.58 -0.09 7.42 16 11 O -0.52 -8.48 14.12 5.50 0.08 -8.40 16 12 N -0.69 -10.22 5.55 -60.73 -0.34 -10.56 16 13 C 0.11 1.83 5.67 -4.05 -0.02 1.81 16 14 C -0.12 -2.16 5.27 -26.73 -0.14 -2.30 16 15 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 16 C -0.52 -14.72 9.66 -34.44 -0.33 -15.05 16 17 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 18 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 19 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 20 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 24 C 0.11 0.93 5.86 -2.53 -0.01 0.91 16 25 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.06 0.29 7.75 -51.93 -0.40 -0.11 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.30 7.96 -51.93 -0.41 -0.12 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.41 8.04 -51.93 -0.42 -0.01 16 32 H 0.08 0.81 7.59 -51.93 -0.39 0.42 16 33 H 0.08 0.80 7.68 -51.93 -0.40 0.40 16 34 H 0.41 5.66 7.94 -40.82 -0.32 5.34 16 35 H 0.07 1.16 8.14 -51.92 -0.42 0.73 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.02 0.45 7.20 -51.92 -0.37 0.07 16 40 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 41 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.07 0.58 7.91 -51.93 -0.41 0.17 16 43 H 0.08 0.75 8.04 -51.93 -0.42 0.33 16 LS Contribution 351.09 15.07 5.29 5.29 Total: -1.00 -32.44 351.09 -7.81 -40.24 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -7.34 Total: -0.71 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -1.13 Total: -0.46 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: -0.13 Total: -44.76 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: 0.17 Total: -16.55 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.44 -7.81 -40.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324376462.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.759 kcal (2) G-P(sol) polarization free energy of solvation -32.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds