Wall clock time and date at job start Tue Mar 31 2020 05:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53009 * 109.46967 * 2 1 4 4 H 1.08991 * 110.91522 * 308.90224 * 3 2 1 5 5 C 1.55160 * 111.00399 * 184.99880 * 3 2 1 6 6 C 1.54316 * 102.94268 * 206.42607 * 5 3 2 7 7 N 1.47026 * 107.27365 * 22.19228 * 6 5 3 8 8 C 1.34771 * 125.65100 * 180.79395 * 7 6 5 9 9 O 1.21349 * 120.00233 * 180.02562 * 8 7 6 10 10 C 1.49457 * 119.99987 * 0.02830 * 8 7 6 11 11 O 1.21349 * 119.99780 * 359.97438 * 10 8 7 12 12 N 1.34771 * 119.99987 * 180.02562 * 10 8 7 13 13 C 1.46496 * 120.00089 * 179.97438 * 12 10 8 14 14 C 1.52997 * 109.47441 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47533 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47196 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00091 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99740 * 179.97438 * 16 15 14 19 19 N 1.31521 * 120.00060 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00286 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47271 * 89.99710 * 20 18 16 22 22 H 1.48500 * 109.47590 * 210.00021 * 20 18 16 23 23 H 1.48498 * 109.46933 * 330.00092 * 20 18 16 24 24 C 1.47425 * 108.70074 * 1.05989 * 7 6 5 25 25 H 1.09003 * 109.47400 * 60.00012 * 1 2 3 26 26 H 1.08999 * 109.47204 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47596 * 299.99892 * 1 2 3 28 28 H 1.08996 * 109.47596 * 240.00108 * 2 1 3 29 29 H 1.09003 * 109.47400 * 119.99988 * 2 1 3 30 30 H 1.08997 * 110.71793 * 88.05937 * 5 3 2 31 31 H 1.09002 * 110.71871 * 324.79283 * 5 3 2 32 32 H 1.09004 * 109.88447 * 262.78098 * 6 5 3 33 33 H 1.09000 * 109.88516 * 141.60887 * 6 5 3 34 34 H 0.97002 * 119.99843 * 359.97438 * 12 10 8 35 35 H 1.09008 * 109.47264 * 299.99730 * 13 12 10 36 36 H 1.08993 * 109.47471 * 59.99715 * 13 12 10 37 37 H 1.09007 * 109.46923 * 299.99652 * 14 13 12 38 38 H 1.09006 * 109.47725 * 59.99628 * 14 13 12 39 39 H 1.09007 * 109.46617 * 299.99698 * 15 14 13 40 40 H 1.08992 * 109.47053 * 59.99217 * 15 14 13 41 41 H 0.96996 * 119.99683 * 180.02562 * 19 18 16 42 42 H 1.09001 * 110.36478 * 94.71036 * 24 7 6 43 43 H 1.08998 * 110.36859 * 217.03414 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5668 2.0225 -0.7923 5 6 3.5857 1.4860 -0.1262 6 6 3.9507 2.8219 0.5545 7 7 2.8408 3.1716 1.4531 8 6 2.7694 4.2778 2.2196 9 8 1.8010 4.4645 2.9268 10 6 3.8827 5.2746 2.1987 11 8 4.8512 5.0877 1.4919 12 7 3.8115 6.3805 2.9657 13 6 4.9031 7.3574 2.9456 14 6 4.5749 8.5086 3.8984 15 6 5.7146 9.5292 3.8770 16 6 5.3910 10.6634 4.8149 17 1 4.4648 10.6572 5.3704 18 6 6.2773 11.7090 4.9639 19 7 5.9951 12.6986 5.7829 20 14 7.8789 11.7200 4.0026 21 1 7.6713 12.4075 2.7027 22 1 8.9191 12.4382 4.7818 23 1 8.3195 10.3230 3.7588 24 6 1.8218 2.1086 1.3815 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8871 1.4919 -1.1737 31 1 4.0394 0.6473 0.4020 32 1 4.0768 3.5996 -0.1988 33 1 4.8701 2.7065 1.1286 34 1 3.0375 6.5297 3.5309 35 1 5.8278 6.8756 3.2636 36 1 5.0248 7.7456 1.9345 37 1 3.6502 8.9906 3.5808 38 1 4.4535 8.1202 4.9096 39 1 6.6396 9.0474 4.1942 40 1 5.8356 9.9175 2.8658 41 1 6.6185 13.4344 5.8873 42 1 1.9738 1.3830 2.1807 43 1 0.8215 2.5372 1.4424 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324376462.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:30 Heat of formation + Delta-G solvation = -111.828014 kcal Electronic energy + Delta-G solvation = -21656.306871 eV Core-core repulsion = 18313.790435 eV Total energy + Delta-G solvation = -3342.516436 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.90816 -40.09534 -38.87997 -37.17266 -35.35132 -34.88307 -33.31203 -31.60916 -29.67880 -29.15536 -26.69627 -24.98284 -23.45587 -22.93679 -22.30064 -21.18204 -20.79466 -19.10574 -18.67553 -18.12053 -17.54413 -16.84713 -16.76827 -16.25109 -16.13720 -15.39482 -15.30848 -14.85507 -14.77960 -14.47570 -14.36638 -14.04412 -13.82192 -13.65434 -13.60449 -13.46783 -12.84370 -12.76573 -12.73158 -12.68631 -12.06409 -11.91157 -11.78813 -11.62001 -11.57879 -11.55459 -11.44923 -11.34438 -10.75986 -10.68131 -10.33168 -9.89716 -8.28875 -6.33479 0.26168 1.17645 1.38116 1.39753 1.51637 2.04350 2.37097 2.40790 3.06646 3.21694 3.54153 3.59713 3.82507 4.00120 4.15582 4.25196 4.32344 4.36749 4.46163 4.49124 4.55227 4.67531 4.79386 4.83255 4.84803 4.92245 4.98822 5.00552 5.01022 5.10140 5.16445 5.22942 5.24950 5.38808 5.44929 5.51967 5.54116 5.64424 5.94003 6.16354 6.27422 6.56686 6.74761 6.85641 7.31141 8.87669 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.047798 B = 0.002512 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.662303 B =11144.927549 C =11639.209746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.106 4.106 3 C -0.094 4.094 4 H 0.087 0.913 5 C -0.121 4.121 6 C 0.101 3.899 7 N -0.590 5.590 8 C 0.518 3.482 9 O -0.548 6.548 10 C 0.504 3.496 11 O -0.536 6.536 12 N -0.690 5.690 13 C 0.126 3.874 14 C -0.105 4.105 15 C -0.010 4.010 16 C -0.533 4.533 17 H 0.034 0.966 18 C 0.001 3.999 19 N -0.952 5.952 20 Si 0.952 3.048 21 H -0.267 1.267 22 H -0.286 1.286 23 H -0.244 1.244 24 C 0.102 3.898 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.048 0.952 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.417 0.583 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.026 0.974 40 H 0.024 0.976 41 H 0.266 0.734 42 H 0.082 0.918 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.898 -29.176 -15.468 33.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.144 4.144 3 C -0.113 4.113 4 H 0.106 0.894 5 C -0.159 4.159 6 C -0.021 4.021 7 N -0.323 5.323 8 C 0.301 3.699 9 O -0.427 6.427 10 C 0.285 3.715 11 O -0.414 6.414 12 N -0.342 5.342 13 C 0.003 3.997 14 C -0.143 4.143 15 C -0.048 4.048 16 C -0.571 4.571 17 H 0.052 0.948 18 C -0.196 4.196 19 N -0.592 5.592 20 Si 0.775 3.225 21 H -0.192 1.192 22 H -0.212 1.212 23 H -0.167 1.167 24 C -0.019 4.019 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.067 0.933 28 H 0.101 0.899 29 H 0.089 0.911 30 H 0.122 0.878 31 H 0.110 0.890 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.254 0.746 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.044 0.956 40 H 0.043 0.957 41 H 0.075 0.925 42 H 0.100 0.900 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.648 -28.980 -15.484 33.522 hybrid contribution 0.153 1.007 0.530 1.148 sum -6.495 -27.973 -14.954 32.377 Atomic orbital electron populations 1.21831 0.95743 1.02176 1.01787 1.21442 0.95899 0.93570 1.03474 1.22445 0.96104 0.97696 0.95032 0.89425 1.22821 0.95082 0.95370 1.02588 1.22348 0.88682 0.98377 0.92664 1.48432 1.23018 1.19662 1.41222 1.19823 0.86858 0.82432 0.80830 1.90754 1.33909 1.76639 1.41400 1.20104 0.87121 0.83091 0.81204 1.90727 1.33442 1.76447 1.40735 1.45893 1.23992 1.20609 1.43720 1.21544 0.89028 0.88335 1.00759 1.21527 0.99714 0.94416 0.98618 1.19455 0.95493 0.93682 0.96183 1.21471 1.05184 1.05431 1.25017 0.94792 1.26054 1.02498 0.94813 0.96194 1.70074 1.38675 1.11273 1.39201 0.85636 0.78461 0.79797 0.78632 1.19163 1.21170 1.16692 1.22687 0.91469 0.88372 0.99399 0.92604 0.91912 0.93274 0.89860 0.91066 0.87817 0.88981 0.91070 0.91034 0.74606 0.90905 0.90834 0.91890 0.91894 0.95614 0.95731 0.92524 0.90028 0.90831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 9.81 71.98 0.71 -0.47 16 2 C -0.11 -0.68 5.45 30.59 0.17 -0.51 16 3 C -0.09 -0.91 3.01 -9.40 -0.03 -0.94 16 4 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 5 C -0.12 -1.11 6.42 31.78 0.20 -0.91 16 6 C 0.10 1.73 5.49 86.73 0.48 2.21 16 7 N -0.59 -12.61 3.33 -813.36 -2.71 -15.32 16 8 C 0.52 14.20 7.91 87.27 0.69 14.89 16 9 O -0.55 -17.30 16.73 -3.24 -0.05 -17.35 16 10 C 0.50 14.67 7.86 87.27 0.69 15.36 16 11 O -0.54 -16.82 14.12 -3.24 -0.05 -16.87 16 12 N -0.69 -19.79 5.55 -464.42 -2.58 -22.37 16 13 C 0.13 3.90 5.67 86.38 0.49 4.39 16 14 C -0.10 -3.84 5.27 30.59 0.16 -3.67 16 15 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 16 C -0.53 -30.46 9.66 25.60 0.25 -30.21 16 17 H 0.03 2.13 7.99 -2.91 -0.02 2.11 16 18 C 0.00 0.06 5.47 84.65 0.46 0.52 16 19 N -0.95 -59.87 13.96 21.45 0.30 -59.57 16 20 Si 0.95 44.02 27.47 68.60 1.88 45.91 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 22 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 23 H -0.24 -10.36 6.54 99.48 0.65 -9.71 16 24 C 0.10 1.60 5.86 86.86 0.51 2.11 16 25 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.05 0.45 7.75 -2.39 -0.02 0.43 16 28 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.07 0.43 7.96 -2.39 -0.02 0.41 16 30 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.09 0.65 8.04 -2.39 -0.02 0.63 16 32 H 0.07 1.36 7.59 -2.38 -0.02 1.34 16 33 H 0.07 1.36 7.68 -2.39 -0.02 1.34 16 34 H 0.42 11.26 7.94 -92.71 -0.74 10.52 16 35 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 36 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 38 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 39 H 0.03 1.13 7.20 -2.38 -0.02 1.11 16 40 H 0.02 1.07 7.57 -2.39 -0.02 1.05 16 41 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 42 H 0.08 1.17 7.91 -2.39 -0.02 1.15 16 43 H 0.07 1.30 8.04 -2.39 -0.02 1.28 16 Total: -1.00 -70.40 351.09 1.89 -68.51 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.19 Total: 14.63 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: 4.89 Total: 2.43 kcal Atomic # 7 Polarization: -92.28 SS G_CDS: -4.98 Total: -97.26 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -0.10 Total: -34.22 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.88 Total: 45.91 kcal Total: -70.40 1.89 -68.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324376462.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.316 kcal (2) G-P(sol) polarization free energy of solvation -70.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds