Wall clock time and date at job start Tue Mar 31 2020 05:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.08993 * 110.89211 * 54.29706 * 3 2 1 5 5 C 1.55160 * 111.00031 * 178.18171 * 3 2 1 6 6 C 1.54372 * 102.92049 * 153.54447 * 5 3 2 7 7 N 1.47026 * 107.28733 * 337.86240 * 6 5 3 8 8 C 1.34773 * 125.64595 * 178.94755 * 7 6 5 9 9 O 1.21354 * 119.99612 * 179.97438 * 8 7 6 10 10 C 1.49443 * 120.00423 * 359.94837 * 8 7 6 11 11 O 1.21354 * 119.99964 * 0.02562 * 10 8 7 12 12 N 1.34782 * 120.00254 * 180.02562 * 10 8 7 13 13 C 1.46497 * 119.99809 * 180.02562 * 12 10 8 14 14 C 1.53004 * 109.47064 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.47272 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.46932 * 179.97438 * 15 14 13 17 17 H 1.08005 * 120.00102 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99824 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99688 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99976 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47091 * 90.00091 * 20 18 16 22 22 H 1.48500 * 109.47032 * 209.99840 * 20 18 16 23 23 H 1.48496 * 109.46985 * 330.00147 * 20 18 16 24 24 C 1.47419 * 108.70409 * 358.90227 * 7 6 5 25 25 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 26 26 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 27 27 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 29 29 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 30 30 H 1.08998 * 110.71543 * 271.93297 * 5 3 2 31 31 H 1.09000 * 110.72334 * 35.21108 * 5 3 2 32 32 H 1.08999 * 109.90139 * 218.41985 * 6 5 3 33 33 H 1.09008 * 109.97371 * 97.33717 * 6 5 3 34 34 H 0.97000 * 119.99691 * 0.02562 * 12 10 8 35 35 H 1.09001 * 109.47290 * 299.99767 * 13 12 10 36 36 H 1.08997 * 109.47317 * 60.00199 * 13 12 10 37 37 H 1.09005 * 109.47087 * 299.99988 * 14 13 12 38 38 H 1.08997 * 109.47153 * 59.99778 * 14 13 12 39 39 H 1.08997 * 109.47144 * 300.00225 * 15 14 13 40 40 H 1.09005 * 109.47074 * 60.00107 * 15 14 13 41 41 H 0.97006 * 119.99746 * 179.97438 * 19 18 16 42 42 H 1.08996 * 110.37223 * 265.29400 * 24 7 6 43 43 H 1.08999 * 110.45981 * 143.01618 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6093 2.0070 0.8269 5 6 3.5903 1.4842 0.0460 6 6 3.9195 2.8329 -0.6291 7 7 2.7637 3.1988 -1.4608 8 6 2.6506 4.3212 -2.1983 9 8 1.6464 4.5204 -2.8499 10 6 3.7615 5.3206 -2.2132 11 8 4.7658 5.1214 -1.5617 12 7 3.6482 6.4433 -2.9503 13 6 4.7375 7.4228 -2.9653 14 6 4.3572 8.5947 -3.8725 15 6 5.4951 9.6174 -3.8887 16 6 5.1206 10.7713 -4.7826 17 1 4.1663 10.7751 -5.2883 18 6 5.9960 11.8227 -4.9542 19 7 5.6694 12.8295 -5.7347 20 14 7.6463 11.8164 -4.0790 21 1 8.6605 11.1562 -4.9397 22 1 8.0655 13.2140 -3.8030 23 1 7.5247 11.0740 -2.7987 24 6 1.7494 2.1342 -1.3554 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3635 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9460 1.4709 1.0762 31 1 4.0154 0.6557 -0.5207 32 1 4.8071 2.7286 -1.2531 33 1 4.0875 3.5977 0.1293 34 1 2.8453 6.6027 -3.4708 35 1 4.9112 7.7886 -1.9534 36 1 5.6451 6.9511 -3.3419 37 1 4.1832 8.2292 -4.8846 38 1 3.4497 9.0663 -3.4955 39 1 5.6695 9.9829 -2.8768 40 1 6.4023 9.1455 -4.2660 41 1 6.2850 13.5694 -5.8551 42 1 1.8584 1.4238 -2.1748 43 1 0.7468 2.5617 -1.3558 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324376463.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:34 Heat of formation + Delta-G solvation = -90.011262 kcal Electronic energy + Delta-G solvation = -21660.220590 eV Core-core repulsion = 18318.650199 eV Total energy + Delta-G solvation = -3341.570391 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.87244 -39.12731 -37.90482 -35.78555 -34.41046 -33.31134 -31.48054 -30.96126 -28.84934 -27.62937 -25.67662 -23.72252 -22.65299 -21.89586 -20.77303 -20.56810 -19.60414 -17.89445 -17.07244 -16.75397 -16.58173 -15.86995 -15.56448 -15.13103 -14.46299 -14.42869 -14.09634 -13.94483 -13.81549 -13.55066 -13.20210 -13.08681 -12.77073 -12.72727 -12.27626 -12.08194 -11.96985 -11.70901 -11.60557 -11.12018 -11.09316 -11.04434 -11.00034 -10.92029 -10.16456 -9.96962 -9.78009 -9.46618 -9.24095 -9.13078 -8.95126 -8.56425 -6.06749 -4.05674 1.39287 2.19949 3.17770 3.30219 3.37784 3.41325 3.42185 4.02001 4.16900 4.29908 4.43224 4.43626 4.74624 4.85426 4.87522 4.97144 5.05011 5.26884 5.28984 5.33224 5.44289 5.46298 5.52140 5.56931 5.58207 5.59229 5.62972 5.79342 5.82969 5.93136 5.95267 6.17420 6.38990 6.55351 6.73968 6.94161 7.19665 7.25662 7.33312 7.65628 7.74646 8.00926 8.49732 8.97400 9.55015 11.06446 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.047695 B = 0.002515 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.923197 B =11131.335690 C =11629.214084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.111 4.111 3 C -0.103 4.103 4 H 0.087 0.913 5 C -0.132 4.132 6 C 0.107 3.893 7 N -0.595 5.595 8 C 0.521 3.479 9 O -0.522 6.522 10 C 0.503 3.497 11 O -0.523 6.523 12 N -0.692 5.692 13 C 0.113 3.887 14 C -0.115 4.115 15 C -0.010 4.010 16 C -0.523 4.523 17 H 0.073 0.927 18 C 0.066 3.934 19 N -0.902 5.902 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.265 1.265 24 C 0.109 3.891 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.412 0.588 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.019 0.981 40 H 0.015 0.985 41 H 0.263 0.737 42 H 0.073 0.927 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.114 -27.080 13.221 30.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.149 4.149 3 C -0.123 4.123 4 H 0.105 0.895 5 C -0.170 4.170 6 C -0.016 4.016 7 N -0.329 5.329 8 C 0.304 3.696 9 O -0.398 6.398 10 C 0.283 3.717 11 O -0.399 6.399 12 N -0.344 5.344 13 C -0.010 4.010 14 C -0.153 4.153 15 C -0.048 4.048 16 C -0.561 4.561 17 H 0.091 0.909 18 C -0.135 4.135 19 N -0.541 5.541 20 Si 0.708 3.292 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.189 1.189 24 C -0.013 4.013 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.248 0.752 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.038 0.962 40 H 0.033 0.967 41 H 0.073 0.927 42 H 0.091 0.909 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.855 -26.832 13.206 30.681 hybrid contribution 0.559 0.273 0.092 0.628 sum -6.296 -26.560 13.297 30.362 Atomic orbital electron populations 1.21819 0.95500 1.01869 1.02200 1.21462 0.96181 0.94721 1.02573 1.22463 0.95779 0.96833 0.97178 0.89452 1.22823 0.95373 0.96996 1.01773 1.22208 0.88343 0.96467 0.94545 1.48245 1.19856 1.19233 1.45612 1.20028 0.87778 0.81810 0.79983 1.90769 1.30925 1.76223 1.41862 1.19911 0.87308 0.83160 0.81301 1.90738 1.30594 1.76539 1.42068 1.46008 1.22231 1.19558 1.46608 1.21835 0.88704 0.88836 1.01578 1.21745 1.01214 0.94204 0.98170 1.19502 0.93557 0.94266 0.97491 1.21091 1.04795 1.02568 1.27602 0.90933 1.25038 0.98358 0.95295 0.94849 1.69915 1.36819 1.09319 1.38028 0.86766 0.84363 0.77242 0.80861 1.20248 1.21364 1.18921 1.22427 0.92668 0.88804 0.97405 0.92573 0.92431 0.92557 0.91507 0.91268 0.89679 0.90323 0.90273 0.90166 0.75176 0.91150 0.91149 0.91818 0.91791 0.96248 0.96683 0.92685 0.90861 0.89977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.73 9.79 37.16 0.36 -0.37 16 2 C -0.11 -0.51 5.44 -26.73 -0.15 -0.66 16 3 C -0.10 -0.62 3.04 -88.47 -0.27 -0.89 16 4 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 5 C -0.13 -0.79 6.42 -24.87 -0.16 -0.95 16 6 C 0.11 1.00 5.49 -3.04 -0.02 0.98 16 7 N -0.59 -6.65 3.33 -171.00 -0.57 -7.22 16 8 C 0.52 7.26 7.91 -11.59 -0.09 7.17 16 9 O -0.52 -8.24 16.74 5.49 0.09 -8.15 16 10 C 0.50 7.52 7.86 -11.59 -0.09 7.42 16 11 O -0.52 -8.48 14.12 5.49 0.08 -8.40 16 12 N -0.69 -10.23 5.55 -60.73 -0.34 -10.56 16 13 C 0.11 1.83 5.67 -4.04 -0.02 1.81 16 14 C -0.12 -2.15 5.27 -26.73 -0.14 -2.30 16 15 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 16 C -0.52 -14.72 9.66 -34.44 -0.33 -15.06 16 17 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 18 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 19 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 20 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 24 C 0.11 0.93 5.71 -2.53 -0.01 0.91 16 25 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.06 0.30 7.59 -51.93 -0.39 -0.10 16 27 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.07 0.30 8.04 -51.93 -0.42 -0.12 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.41 8.04 -51.93 -0.42 -0.01 16 32 H 0.08 0.80 7.69 -51.93 -0.40 0.40 16 33 H 0.08 0.82 7.57 -51.92 -0.39 0.42 16 34 H 0.41 5.66 7.94 -40.82 -0.32 5.34 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 40 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 41 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.07 0.58 7.96 -51.93 -0.41 0.17 16 43 H 0.08 0.75 8.00 -51.93 -0.42 0.33 16 LS Contribution 350.87 15.07 5.29 5.29 Total: -1.00 -32.44 350.87 -7.81 -40.24 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -7.33 Total: -0.71 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -1.13 Total: -0.46 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: -0.13 Total: -44.75 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: 0.17 Total: -16.55 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.44 -7.81 -40.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324376463.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.769 kcal (2) G-P(sol) polarization free energy of solvation -32.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds