Wall clock time and date at job start Tue Mar 31 2020 05:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.08993 * 110.89211 * 54.29706 * 3 2 1 5 5 C 1.55160 * 111.00031 * 178.18171 * 3 2 1 6 6 C 1.54372 * 102.92049 * 153.54447 * 5 3 2 7 7 N 1.47026 * 107.28733 * 337.86240 * 6 5 3 8 8 C 1.34773 * 125.64595 * 178.94755 * 7 6 5 9 9 O 1.21354 * 119.99612 * 179.97438 * 8 7 6 10 10 C 1.49443 * 120.00423 * 359.94837 * 8 7 6 11 11 O 1.21354 * 119.99964 * 0.02562 * 10 8 7 12 12 N 1.34782 * 120.00254 * 180.02562 * 10 8 7 13 13 C 1.46497 * 119.99809 * 180.02562 * 12 10 8 14 14 C 1.53004 * 109.47064 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.47272 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.46932 * 179.97438 * 15 14 13 17 17 H 1.08005 * 120.00102 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99824 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99688 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99976 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47091 * 90.00091 * 20 18 16 22 22 H 1.48500 * 109.47032 * 209.99840 * 20 18 16 23 23 H 1.48496 * 109.46985 * 330.00147 * 20 18 16 24 24 C 1.47419 * 108.70409 * 358.90227 * 7 6 5 25 25 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 26 26 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 27 27 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 29 29 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 30 30 H 1.08998 * 110.71543 * 271.93297 * 5 3 2 31 31 H 1.09000 * 110.72334 * 35.21108 * 5 3 2 32 32 H 1.08999 * 109.90139 * 218.41985 * 6 5 3 33 33 H 1.09008 * 109.97371 * 97.33717 * 6 5 3 34 34 H 0.97000 * 119.99691 * 0.02562 * 12 10 8 35 35 H 1.09001 * 109.47290 * 299.99767 * 13 12 10 36 36 H 1.08997 * 109.47317 * 60.00199 * 13 12 10 37 37 H 1.09005 * 109.47087 * 299.99988 * 14 13 12 38 38 H 1.08997 * 109.47153 * 59.99778 * 14 13 12 39 39 H 1.08997 * 109.47144 * 300.00225 * 15 14 13 40 40 H 1.09005 * 109.47074 * 60.00107 * 15 14 13 41 41 H 0.97006 * 119.99746 * 179.97438 * 19 18 16 42 42 H 1.08996 * 110.37223 * 265.29400 * 24 7 6 43 43 H 1.08999 * 110.45981 * 143.01618 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6093 2.0070 0.8269 5 6 3.5903 1.4842 0.0460 6 6 3.9195 2.8329 -0.6291 7 7 2.7637 3.1988 -1.4608 8 6 2.6506 4.3212 -2.1983 9 8 1.6464 4.5204 -2.8499 10 6 3.7615 5.3206 -2.2132 11 8 4.7658 5.1214 -1.5617 12 7 3.6482 6.4433 -2.9503 13 6 4.7375 7.4228 -2.9653 14 6 4.3572 8.5947 -3.8725 15 6 5.4951 9.6174 -3.8887 16 6 5.1206 10.7713 -4.7826 17 1 4.1663 10.7751 -5.2883 18 6 5.9960 11.8227 -4.9542 19 7 5.6694 12.8295 -5.7347 20 14 7.6463 11.8164 -4.0790 21 1 8.6605 11.1562 -4.9397 22 1 8.0655 13.2140 -3.8030 23 1 7.5247 11.0740 -2.7987 24 6 1.7494 2.1342 -1.3554 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3635 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9460 1.4709 1.0762 31 1 4.0154 0.6557 -0.5207 32 1 4.8071 2.7286 -1.2531 33 1 4.0875 3.5977 0.1293 34 1 2.8453 6.6027 -3.4708 35 1 4.9112 7.7886 -1.9534 36 1 5.6451 6.9511 -3.3419 37 1 4.1832 8.2292 -4.8846 38 1 3.4497 9.0663 -3.4955 39 1 5.6695 9.9829 -2.8768 40 1 6.4023 9.1455 -4.2660 41 1 6.2850 13.5694 -5.8551 42 1 1.8584 1.4238 -2.1748 43 1 0.7468 2.5617 -1.3558 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324376463.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:33 Heat of formation + Delta-G solvation = -111.850964 kcal Electronic energy + Delta-G solvation = -21661.167631 eV Core-core repulsion = 18318.650199 eV Total energy + Delta-G solvation = -3342.517431 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.90777 -40.09477 -38.87953 -37.17258 -35.35219 -34.88356 -33.31211 -31.61128 -29.66753 -29.14496 -26.70385 -24.99618 -23.47080 -22.93068 -22.30092 -21.16334 -20.79200 -19.10603 -18.67598 -18.12336 -17.54653 -16.84546 -16.78213 -16.22916 -16.16370 -15.38600 -15.31122 -14.85078 -14.78346 -14.44149 -14.37008 -14.04006 -13.82737 -13.66036 -13.62161 -13.46237 -12.84637 -12.78199 -12.72844 -12.68614 -12.05090 -11.91068 -11.78784 -11.61979 -11.58151 -11.54641 -11.45541 -11.34428 -10.76037 -10.68256 -10.33173 -9.89639 -8.28884 -6.33457 0.26060 1.17627 1.38133 1.39744 1.51666 2.04290 2.37108 2.40764 3.06666 3.21687 3.54005 3.59719 3.82667 4.00102 4.15609 4.25225 4.32310 4.36608 4.46175 4.48811 4.55532 4.67406 4.79398 4.83261 4.84824 4.92229 4.98512 5.00577 5.01021 5.10245 5.16380 5.22986 5.24713 5.39135 5.44939 5.51676 5.54138 5.64418 5.94003 6.16330 6.27408 6.56661 6.74747 6.85589 7.31136 8.87658 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.047695 B = 0.002515 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.923197 B =11131.335690 C =11629.214084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.106 4.106 3 C -0.094 4.094 4 H 0.087 0.913 5 C -0.121 4.121 6 C 0.101 3.899 7 N -0.590 5.590 8 C 0.518 3.482 9 O -0.548 6.548 10 C 0.504 3.496 11 O -0.536 6.536 12 N -0.690 5.690 13 C 0.126 3.874 14 C -0.105 4.105 15 C -0.010 4.010 16 C -0.533 4.533 17 H 0.034 0.966 18 C 0.001 3.999 19 N -0.951 5.951 20 Si 0.952 3.048 21 H -0.267 1.267 22 H -0.286 1.286 23 H -0.244 1.244 24 C 0.102 3.898 25 H 0.055 0.945 26 H 0.048 0.952 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.417 0.583 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.026 0.974 40 H 0.024 0.976 41 H 0.266 0.734 42 H 0.081 0.919 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.048 -29.504 15.175 33.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.144 4.144 3 C -0.113 4.113 4 H 0.106 0.894 5 C -0.158 4.158 6 C -0.021 4.021 7 N -0.323 5.323 8 C 0.301 3.699 9 O -0.427 6.427 10 C 0.285 3.715 11 O -0.414 6.414 12 N -0.342 5.342 13 C 0.003 3.997 14 C -0.143 4.143 15 C -0.048 4.048 16 C -0.571 4.571 17 H 0.052 0.948 18 C -0.196 4.196 19 N -0.592 5.592 20 Si 0.775 3.225 21 H -0.192 1.192 22 H -0.212 1.212 23 H -0.167 1.167 24 C -0.019 4.019 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.122 0.878 31 H 0.110 0.890 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.254 0.746 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.044 0.956 40 H 0.043 0.957 41 H 0.075 0.925 42 H 0.100 0.900 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.800 -29.306 15.185 33.512 hybrid contribution 0.139 1.000 -0.547 1.148 sum -5.661 -28.306 14.637 32.366 Atomic orbital electron populations 1.21833 0.95768 1.02184 1.01786 1.21441 0.95880 0.93565 1.03482 1.22440 0.95887 0.97546 0.95413 0.89435 1.22826 0.95181 0.95177 1.02649 1.22357 0.87504 0.98174 0.94049 1.48425 1.20969 1.18624 1.44298 1.19821 0.87143 0.82462 0.80518 1.90755 1.31617 1.76982 1.43347 1.20104 0.87431 0.83168 0.80817 1.90728 1.31169 1.76868 1.42587 1.45896 1.22095 1.19431 1.46793 1.21545 0.89059 0.88155 1.00905 1.21526 0.99609 0.94204 0.98934 1.19455 0.95375 0.93579 0.96402 1.21473 1.03340 1.04447 1.27852 0.94795 1.26054 1.02925 0.94811 0.95768 1.70074 1.38652 1.10393 1.40096 0.85636 0.78887 0.77600 0.80404 1.19166 1.21168 1.16688 1.22675 0.91604 0.88236 0.99409 0.92628 0.93262 0.91900 0.91043 0.89869 0.87814 0.88973 0.91044 0.91075 0.74606 0.90908 0.90829 0.91888 0.91899 0.95614 0.95731 0.92524 0.90044 0.90821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 9.79 71.98 0.70 -0.49 16 2 C -0.11 -0.68 5.44 30.59 0.17 -0.51 16 3 C -0.09 -0.91 3.04 -9.40 -0.03 -0.94 16 4 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 5 C -0.12 -1.11 6.42 31.80 0.20 -0.90 16 6 C 0.10 1.73 5.49 86.75 0.48 2.21 16 7 N -0.59 -12.62 3.33 -813.27 -2.71 -15.32 16 8 C 0.52 14.20 7.91 87.27 0.69 14.89 16 9 O -0.55 -17.30 16.74 -3.26 -0.05 -17.35 16 10 C 0.50 14.67 7.86 87.27 0.69 15.36 16 11 O -0.54 -16.82 14.12 -3.26 -0.05 -16.87 16 12 N -0.69 -19.79 5.55 -464.41 -2.58 -22.37 16 13 C 0.13 3.90 5.67 86.38 0.49 4.39 16 14 C -0.10 -3.83 5.27 30.60 0.16 -3.67 16 15 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 16 C -0.53 -30.46 9.66 25.60 0.25 -30.22 16 17 H 0.03 2.13 7.99 -2.91 -0.02 2.10 16 18 C 0.00 0.06 5.47 84.66 0.46 0.53 16 19 N -0.95 -59.87 13.96 21.45 0.30 -59.57 16 20 Si 0.95 44.02 27.47 68.60 1.88 45.90 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 22 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 23 H -0.24 -10.36 6.54 99.48 0.65 -9.71 16 24 C 0.10 1.60 5.71 86.86 0.50 2.09 16 25 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.05 0.45 7.59 -2.39 -0.02 0.43 16 27 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.07 0.42 8.04 -2.39 -0.02 0.41 16 29 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.09 0.65 8.04 -2.39 -0.02 0.63 16 32 H 0.07 1.35 7.69 -2.39 -0.02 1.33 16 33 H 0.07 1.36 7.57 -2.38 -0.02 1.35 16 34 H 0.42 11.26 7.94 -92.71 -0.74 10.52 16 35 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 38 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.03 1.13 7.20 -2.39 -0.02 1.11 16 40 H 0.02 1.07 7.57 -2.38 -0.02 1.05 16 41 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 42 H 0.08 1.17 7.96 -2.39 -0.02 1.15 16 43 H 0.07 1.30 8.00 -2.39 -0.02 1.28 16 Total: -1.00 -70.40 350.87 1.87 -68.53 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.19 Total: 14.64 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: 4.88 Total: 2.41 kcal Atomic # 7 Polarization: -92.28 SS G_CDS: -4.98 Total: -97.26 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -0.10 Total: -34.22 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.88 Total: 45.90 kcal Total: -70.40 1.87 -68.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324376463.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.322 kcal (2) G-P(sol) polarization free energy of solvation -70.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds