Wall clock time and date at job start Tue Mar 31 2020 06:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46774 * 2 1 4 4 N 1.46498 * 109.47306 * 120.00176 * 2 1 3 5 5 C 1.46506 * 119.99695 * 300.00192 * 4 2 1 6 6 C 1.34775 * 120.00290 * 120.00042 * 4 2 1 7 7 O 1.21287 * 119.99459 * 0.02562 * 6 4 2 8 8 C 1.50697 * 119.99968 * 180.02562 * 6 4 2 9 9 C 1.53353 * 109.40922 * 300.11798 * 8 6 4 10 10 C 1.53188 * 109.15114 * 178.68575 * 9 8 6 11 11 N 1.46922 * 108.89394 * 54.57762 * 10 9 8 12 12 C 1.34776 * 120.62898 * 126.34399 * 11 10 9 13 13 O 1.21689 * 120.00329 * 354.75880 * 12 11 10 14 14 C 1.46378 * 119.99861 * 174.75957 * 12 11 10 15 15 H 1.07998 * 119.99844 * 5.00940 * 14 12 11 16 16 C 1.40048 * 119.99682 * 185.00494 * 14 12 11 17 17 N 1.30671 * 120.00214 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 119.99758 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47401 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47532 * 120.00128 * 18 16 14 21 21 H 1.48499 * 109.47034 * 240.00267 * 18 16 14 22 22 C 1.46923 * 118.74131 * 306.32015 * 11 10 9 23 23 C 1.53045 * 109.45897 * 180.02562 * 8 6 4 24 24 H 1.08998 * 109.47127 * 299.99545 * 1 2 3 25 25 H 1.09002 * 109.47347 * 60.00013 * 1 2 3 26 26 H 1.08999 * 109.46951 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47127 * 240.00455 * 2 1 3 28 28 H 1.08998 * 109.46681 * 179.97438 * 3 2 1 29 29 H 1.08993 * 109.46996 * 299.99846 * 3 2 1 30 30 H 1.08998 * 109.46922 * 60.00330 * 3 2 1 31 31 H 1.08998 * 109.46802 * 269.99515 * 5 4 2 32 32 H 1.08992 * 109.47117 * 30.00001 * 5 4 2 33 33 H 1.08997 * 109.46874 * 150.00508 * 5 4 2 34 34 H 1.08996 * 109.46200 * 60.03103 * 8 6 4 35 35 H 1.09005 * 109.68105 * 58.71601 * 9 8 6 36 36 H 1.09003 * 109.47310 * 298.52573 * 9 8 6 37 37 H 1.08999 * 109.58478 * 294.72229 * 10 9 8 38 38 H 1.08999 * 109.58399 * 174.44034 * 10 9 8 39 39 H 0.96998 * 119.99786 * 180.02562 * 17 16 14 40 40 H 1.08995 * 109.58992 * 173.39368 * 22 11 10 41 41 H 1.08999 * 109.59224 * 293.68124 * 22 11 10 42 42 H 1.09003 * 109.49640 * 61.41710 * 23 8 6 43 43 H 1.09000 * 109.51983 * 301.33802 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6644 -0.1901 2.5267 6 6 2.7933 -1.7864 1.0725 7 8 3.0866 -2.2004 -0.0292 8 6 3.2951 -2.4971 2.3029 9 6 4.1441 -1.5314 3.1386 10 6 4.6238 -2.2498 4.4037 11 7 5.3183 -3.4848 4.0151 12 6 6.5670 -3.7378 4.4546 13 8 7.1663 -2.8987 5.1010 14 6 7.2025 -5.0218 4.1544 15 1 6.7043 -5.7341 3.5135 16 6 8.4567 -5.3264 4.6981 17 7 9.0593 -4.4647 5.4739 18 14 9.2680 -6.9647 4.3144 19 1 8.3867 -7.7558 3.4185 20 1 10.5706 -6.7267 3.6423 21 1 9.4919 -7.7139 5.5769 22 6 4.6255 -4.4391 3.1387 23 6 4.1460 -3.6990 1.8861 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 2.4158 0.5273 2.8567 32 1 0.6905 0.2973 2.4843 33 1 1.6239 -1.0226 3.2291 34 1 2.4471 -2.8402 2.8954 35 1 3.5459 -0.6638 3.4174 36 1 5.0060 -1.2073 2.5553 37 1 3.7674 -2.4944 5.0319 38 1 5.3078 -1.6035 4.9538 39 1 9.9281 -4.6756 5.8501 40 1 5.3113 -5.2363 2.8520 41 1 3.7707 -4.8642 3.6647 42 1 5.0077 -3.3540 1.3146 43 1 3.5484 -4.3729 1.2722 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325724981.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:43 Heat of formation + Delta-G solvation = -73.282232 kcal Electronic energy + Delta-G solvation = -23194.205665 eV Core-core repulsion = 19853.360700 eV Total energy + Delta-G solvation = -3340.844966 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.41774 -38.22407 -36.56890 -35.60937 -33.02051 -32.52569 -31.19858 -30.47310 -27.46892 -27.13417 -26.57678 -25.02413 -22.63817 -21.96903 -20.41943 -19.19378 -18.74724 -17.20300 -16.61717 -16.18056 -15.57875 -15.32864 -14.56617 -14.32722 -14.21877 -14.09564 -13.83644 -13.50563 -13.31851 -13.17109 -12.68805 -12.45506 -12.40890 -12.31998 -12.17878 -11.69992 -11.58305 -11.45865 -11.25488 -11.14472 -11.04478 -10.91207 -10.68384 -10.54177 -10.24871 -10.18137 -9.80815 -9.45306 -8.85197 -8.75264 -7.56960 -7.21628 -6.19013 -4.63285 2.70393 2.92156 3.13963 3.22501 3.26664 4.09997 4.44959 4.54464 4.60340 4.79711 4.83235 4.89724 5.03934 5.05119 5.08183 5.27794 5.30249 5.36834 5.47473 5.54266 5.54609 5.65196 5.70976 5.73520 5.85120 5.93439 5.96778 5.99149 6.08800 6.26922 6.28948 6.48454 6.52304 6.55152 6.55371 6.82139 7.33022 7.47320 7.63883 8.15721 8.23342 8.36848 9.03640 9.44122 10.58312 10.76991 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034910 B = 0.003782 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.864283 B = 7402.407964 C = 7756.704623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.128 3.872 3 C -0.160 4.160 4 N -0.615 5.615 5 C 0.074 3.926 6 C 0.521 3.479 7 O -0.541 6.541 8 C -0.100 4.100 9 C -0.132 4.132 10 C 0.123 3.877 11 N -0.643 5.643 12 C 0.559 3.441 13 O -0.579 6.579 14 C -0.544 4.544 15 H 0.074 0.926 16 C 0.087 3.913 17 N -0.768 5.768 18 Si 0.906 3.094 19 H -0.263 1.263 20 H -0.276 1.276 21 H -0.276 1.276 22 C 0.123 3.877 23 C -0.113 4.113 24 H 0.058 0.942 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.099 0.901 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.042 0.958 38 H 0.086 0.914 39 H 0.267 0.733 40 H 0.096 0.904 41 H 0.042 0.958 42 H 0.071 0.929 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.014 7.630 -7.113 19.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.025 3.975 3 C -0.218 4.218 4 N -0.350 5.350 5 C -0.068 4.068 6 C 0.310 3.690 7 O -0.417 6.417 8 C -0.121 4.121 9 C -0.171 4.171 10 C -0.002 4.002 11 N -0.381 5.381 12 C 0.366 3.634 13 O -0.462 6.462 14 C -0.580 4.580 15 H 0.092 0.908 16 C -0.132 4.132 17 N -0.397 5.397 18 Si 0.731 3.269 19 H -0.187 1.187 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.002 4.002 23 C -0.152 4.152 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.118 0.882 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.111 0.889 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.105 0.895 39 H 0.078 0.922 40 H 0.114 0.886 41 H 0.060 0.940 42 H 0.089 0.911 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.343 7.918 -7.214 19.540 hybrid contribution 0.207 -0.684 -0.185 0.738 sum -16.135 7.234 -7.399 19.169 Atomic orbital electron populations 1.22139 0.95143 1.02350 1.02188 1.21035 0.93858 0.93171 0.89469 1.22129 1.01917 0.95636 1.02146 1.47953 1.51543 1.28669 1.06823 1.21947 1.00620 1.00418 0.83859 1.21019 0.76862 0.79626 0.91480 1.90658 1.57296 1.65544 1.28222 1.21369 0.99448 0.97219 0.94080 1.22251 0.99493 0.97437 0.97925 1.21085 0.96244 0.88683 0.94173 1.48196 1.17050 1.19675 1.53179 1.18256 0.78085 0.88290 0.78820 1.90584 1.62585 1.48816 1.44191 1.21033 1.03516 1.01262 1.32212 0.90805 1.25734 0.96715 0.97490 0.93291 1.70026 1.12919 1.33409 1.23368 0.86341 0.79473 0.82325 0.78803 1.18688 1.20166 1.20187 1.21444 0.96664 0.92806 0.89276 1.21797 0.99410 0.95467 0.98499 0.92319 0.91532 0.92309 0.88246 0.92176 0.91607 0.92362 0.92075 0.91298 0.90427 0.88943 0.90729 0.91437 0.93940 0.89523 0.92180 0.88603 0.93954 0.91054 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 9.17 37.16 0.34 -0.89 16 2 C 0.13 1.29 3.25 -67.93 -0.22 1.07 16 3 C -0.16 -1.35 9.19 37.16 0.34 -1.01 16 4 N -0.62 -6.97 2.76 -173.93 -0.48 -7.45 16 5 C 0.07 0.62 7.86 59.85 0.47 1.09 16 6 C 0.52 7.67 7.08 -10.99 -0.08 7.60 16 7 O -0.54 -9.85 15.31 5.55 0.08 -9.76 16 8 C -0.10 -1.44 1.69 -91.57 -0.15 -1.59 16 9 C -0.13 -2.00 5.02 -26.45 -0.13 -2.13 16 10 C 0.12 2.29 6.43 -3.71 -0.02 2.26 16 11 N -0.64 -14.45 2.97 -174.44 -0.52 -14.97 16 12 C 0.56 15.90 7.62 -12.99 -0.10 15.80 16 13 O -0.58 -18.66 14.45 5.20 0.08 -18.59 16 14 C -0.54 -15.26 8.86 -35.63 -0.32 -15.57 16 15 H 0.07 1.90 5.69 -52.49 -0.30 1.60 16 16 C 0.09 2.43 5.50 -17.37 -0.10 2.34 16 17 N -0.77 -23.03 11.84 55.55 0.66 -22.37 16 18 Si 0.91 20.16 29.56 -169.99 -5.02 15.14 16 19 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 20 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 22 C 0.12 2.29 6.32 -3.71 -0.02 2.27 16 23 C -0.11 -1.89 4.65 -26.61 -0.12 -2.01 16 24 H 0.06 0.39 6.66 -51.93 -0.35 0.04 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.10 1.22 6.90 -51.93 -0.36 0.87 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.43 7.67 -51.93 -0.40 0.03 16 31 H 0.06 0.49 6.92 -51.93 -0.36 0.13 16 32 H 0.07 0.44 6.43 -51.93 -0.33 0.10 16 33 H 0.08 0.62 6.02 -51.93 -0.31 0.31 16 34 H 0.09 1.15 7.40 -51.93 -0.38 0.77 16 35 H 0.07 0.88 4.51 -51.93 -0.23 0.65 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.09 1.84 6.99 -51.93 -0.36 1.47 16 39 H 0.27 7.26 8.29 -40.82 -0.34 6.92 16 40 H 0.10 1.91 5.37 -51.93 -0.28 1.63 16 41 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.07 1.37 8.13 -51.93 -0.42 0.95 16 43 H 0.07 1.07 8.07 -51.93 -0.42 0.65 16 LS Contribution 332.89 15.07 5.02 5.02 Total: -1.00 -35.66 332.89 -6.91 -42.56 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -6.60 Total: 1.22 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: -0.11 Total: 9.20 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: -0.34 Total: -44.79 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: 0.16 Total: -28.35 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -35.66 -6.91 -42.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325724981.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.717 kcal (2) G-P(sol) polarization free energy of solvation -35.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds