Wall clock time and date at job start Tue Mar 31 2020 06:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47164 * 2 1 4 4 N 1.46504 * 109.46988 * 179.97438 * 3 2 1 5 5 C 1.46499 * 119.99857 * 269.99506 * 4 3 2 6 6 C 1.52994 * 109.47114 * 263.35022 * 5 4 3 7 7 C 1.34778 * 119.99963 * 89.99909 * 4 3 2 8 8 O 1.21345 * 119.99705 * 354.74039 * 7 4 3 9 9 C 1.49441 * 119.99883 * 174.74324 * 7 4 3 10 10 O 1.21354 * 120.00330 * 359.48798 * 9 7 4 11 11 N 1.34779 * 119.99940 * 179.49150 * 9 7 4 12 12 C 1.46495 * 119.99984 * 175.29951 * 11 9 7 13 13 C 1.52998 * 109.47344 * 184.60539 * 12 11 9 14 14 C 1.50711 * 115.54827 * 303.79545 * 13 12 11 15 15 H 1.07993 * 120.00043 * 144.26633 * 14 13 12 16 16 C 1.37874 * 119.99619 * 324.26966 * 14 13 12 17 17 N 1.31519 * 120.00259 * 3.31108 * 16 14 13 18 18 Si 1.86803 * 119.99860 * 183.31006 * 16 14 13 19 19 H 1.48500 * 109.46709 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47099 * 119.99625 * 18 16 14 21 21 H 1.48497 * 109.47251 * 240.00198 * 18 16 14 22 22 C 1.53003 * 117.50364 * 158.12809 * 13 12 11 23 23 C 1.52995 * 117.50373 * 89.46385 * 13 12 11 24 24 H 1.09002 * 109.47573 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47530 * 300.00349 * 1 2 3 26 26 H 1.09000 * 109.47134 * 60.00254 * 1 2 3 27 27 H 1.08995 * 109.47317 * 239.99553 * 2 1 3 28 28 H 1.09003 * 109.46707 * 119.99452 * 2 1 3 29 29 H 1.08995 * 109.47369 * 59.99584 * 3 2 1 30 30 H 1.09000 * 109.46888 * 299.99897 * 3 2 1 31 31 H 1.09000 * 109.46883 * 23.34715 * 5 4 3 32 32 H 1.09003 * 109.46579 * 143.34718 * 5 4 3 33 33 H 1.09005 * 109.47386 * 299.99830 * 6 5 4 34 34 H 1.08995 * 109.47685 * 59.99975 * 6 5 4 35 35 H 1.08998 * 109.47343 * 180.02562 * 6 5 4 36 36 H 0.96995 * 119.99820 * 355.01539 * 11 9 7 37 37 H 1.09000 * 109.47466 * 304.60137 * 12 11 9 38 38 H 1.09000 * 109.47921 * 64.60038 * 12 11 9 39 39 H 0.96996 * 119.99785 * 185.00571 * 17 16 14 40 40 H 1.08995 * 117.49517 * 359.97438 * 22 13 12 41 41 H 1.09001 * 117.49864 * 145.02185 * 22 13 12 42 42 H 1.09001 * 117.50481 * 214.98379 * 23 13 12 43 43 H 1.08997 * 117.49769 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2370 1.4427 1.2697 6 6 4.6365 2.8756 1.6276 7 6 4.1794 1.4423 -1.1663 8 8 3.5769 1.3458 -2.2152 9 6 5.6691 1.5608 -1.1684 10 8 6.2709 1.6666 -0.1199 11 7 6.3443 1.5503 -2.3348 12 6 7.7927 1.7695 -2.3447 13 6 8.2907 1.8226 -3.7904 14 6 7.9654 0.6173 -4.6346 15 1 7.7317 0.7387 -5.6820 16 6 7.9660 -0.6404 -4.0697 17 7 8.1862 -0.7823 -2.7809 18 14 7.6538 -2.1429 -5.1349 19 1 7.4360 -1.7164 -6.5406 20 1 8.8287 -3.0488 -5.0695 21 1 6.4493 -2.8578 -4.6417 22 6 9.6208 2.5315 -4.0540 23 6 8.3056 3.1868 -4.4829 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6767 1.9564 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 3.6011 1.0357 2.0559 32 1 5.1327 0.8292 1.1725 33 1 5.2723 3.2827 0.8414 34 1 3.7409 3.4891 1.7247 35 1 5.1815 2.8758 2.5716 36 1 5.8719 1.3934 -3.1673 37 1 8.0210 2.7120 -1.8471 38 1 8.2876 0.9525 -1.8198 39 1 8.2589 -1.6698 -2.3962 40 1 10.1408 2.9603 -3.1975 41 1 10.2602 2.1263 -4.8383 42 1 8.0804 3.2126 -5.5491 43 1 7.9602 4.0465 -3.9087 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327748200.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:57 Heat of formation + Delta-G solvation = -45.584038 kcal Electronic energy + Delta-G solvation = -23249.608587 eV Core-core repulsion = 19909.964705 eV Total energy + Delta-G solvation = -3339.643882 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.28993 -38.05310 -36.74150 -36.26308 -33.75254 -32.87423 -32.19442 -30.13622 -27.30525 -26.10128 -25.43435 -23.57659 -22.51238 -21.33820 -21.02940 -19.41108 -18.87157 -17.35647 -16.65537 -16.15807 -15.50305 -15.10857 -14.95913 -14.79585 -14.36464 -14.06185 -13.94608 -13.45014 -13.19912 -12.86931 -12.64034 -12.41130 -12.21099 -12.07393 -11.83008 -11.63729 -11.47891 -11.38669 -11.11616 -10.87025 -10.78699 -10.66423 -10.59190 -10.52054 -10.26280 -9.69941 -9.04592 -8.90289 -8.70208 -8.59593 -8.32320 -7.95729 -6.04031 -4.22439 2.07074 2.85539 3.22623 3.32508 3.35422 3.89281 4.10070 4.30191 4.83584 4.91598 4.93337 5.11927 5.25098 5.27037 5.37629 5.46762 5.52355 5.59476 5.67188 5.72984 5.89473 5.94170 5.97750 6.05882 6.17580 6.26289 6.26842 6.45015 6.50927 6.58007 6.64740 6.69782 6.84506 7.02768 7.23040 7.30931 7.45640 7.55263 7.93214 8.05433 8.27227 8.47197 8.79179 8.91709 9.41882 10.86104 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016543 B = 0.005365 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.105332 B = 5218.134377 C = 6141.248431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.142 4.142 3 C 0.115 3.885 4 N -0.593 5.593 5 C 0.105 3.895 6 C -0.158 4.158 7 C 0.507 3.493 8 O -0.524 6.524 9 C 0.491 3.509 10 O -0.538 6.538 11 N -0.645 5.645 12 C 0.159 3.841 13 C 0.033 3.967 14 C -0.493 4.493 15 H 0.063 0.937 16 C 0.073 3.927 17 N -0.873 5.873 18 Si 0.895 3.105 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.195 4.195 23 C -0.211 4.211 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.107 0.893 33 H 0.070 0.930 34 H 0.042 0.958 35 H 0.062 0.938 36 H 0.411 0.589 37 H 0.027 0.973 38 H 0.124 0.876 39 H 0.262 0.738 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.053 3.634 8.116 13.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.180 4.180 3 C -0.007 4.007 4 N -0.327 5.327 5 C -0.017 4.017 6 C -0.217 4.217 7 C 0.290 3.710 8 O -0.400 6.400 9 C 0.271 3.729 10 O -0.419 6.419 11 N -0.292 5.292 12 C 0.036 3.964 13 C 0.032 3.968 14 C -0.531 4.531 15 H 0.081 0.919 16 C -0.131 4.131 17 N -0.510 5.510 18 Si 0.723 3.277 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.209 1.209 22 C -0.234 4.234 23 C -0.248 4.248 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.125 0.875 33 H 0.088 0.912 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.247 0.753 37 H 0.045 0.955 38 H 0.141 0.859 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.971 3.529 8.413 13.515 hybrid contribution -0.279 -0.869 -0.897 1.279 sum -10.250 2.660 7.517 12.986 Atomic orbital electron populations 1.21681 0.95223 1.01835 1.01764 1.21899 0.95998 0.97258 1.02863 1.21561 0.79067 0.97127 1.02988 1.47891 1.06326 1.72007 1.06510 1.21897 0.97418 0.98962 0.83425 1.22108 1.00700 0.96386 1.02462 1.20697 0.89483 0.77092 0.83715 1.90714 1.70265 1.47835 1.31147 1.19709 0.87335 0.80529 0.85349 1.90618 1.69706 1.50977 1.30563 1.45613 1.10039 1.65395 1.08158 1.21345 0.78145 0.99998 0.96877 1.19229 0.95085 0.90047 0.92423 1.20589 1.47572 0.89576 0.95335 0.91871 1.24998 0.94120 0.99099 0.94841 1.69806 1.48140 1.22849 1.10165 0.86475 0.77937 0.82639 0.80686 1.19637 1.20846 1.20876 1.22944 0.91625 1.06741 1.02090 1.22956 1.03573 0.98231 1.00070 0.92555 0.92795 0.92475 0.91216 0.91872 0.90547 0.89972 0.91618 0.87541 0.91155 0.93940 0.91924 0.75315 0.95475 0.85874 0.92691 0.91401 0.90099 0.90489 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.16 0.37 -0.97 16 2 C -0.14 -1.63 6.26 -26.73 -0.17 -1.80 16 3 C 0.12 1.41 5.34 -4.04 -0.02 1.39 16 4 N -0.59 -8.98 2.49 -174.20 -0.43 -9.42 16 5 C 0.10 1.43 5.70 -4.05 -0.02 1.40 16 6 C -0.16 -2.06 9.60 37.15 0.36 -1.71 16 7 C 0.51 9.59 7.67 -11.59 -0.09 9.50 16 8 O -0.52 -10.91 16.12 5.50 0.09 -10.82 16 9 C 0.49 10.23 7.55 -11.59 -0.09 10.14 16 10 O -0.54 -11.35 11.36 5.49 0.06 -11.29 16 11 N -0.64 -14.35 5.31 -60.74 -0.32 -14.67 16 12 C 0.16 3.69 4.61 -4.05 -0.02 3.67 16 13 C 0.03 0.77 2.04 -155.66 -0.32 0.45 16 14 C -0.49 -12.64 8.38 -34.44 -0.29 -12.93 16 15 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 16 C 0.07 1.88 5.37 -17.82 -0.10 1.79 16 17 N -0.87 -23.06 10.23 55.43 0.57 -22.49 16 18 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 19 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 C -0.20 -4.20 9.96 -26.69 -0.27 -4.46 16 23 C -0.21 -4.40 9.93 -26.69 -0.27 -4.66 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.74 8.07 -51.93 -0.42 0.32 16 30 H 0.08 1.08 7.50 -51.93 -0.39 0.69 16 31 H 0.07 0.71 8.02 -51.93 -0.42 0.29 16 32 H 0.11 1.71 5.88 -51.93 -0.31 1.41 16 33 H 0.07 1.11 6.31 -51.93 -0.33 0.79 16 34 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.41 9.43 7.49 -40.82 -0.31 9.13 16 37 H 0.03 0.61 8.10 -51.93 -0.42 0.19 16 38 H 0.12 3.21 5.79 -51.93 -0.30 2.91 16 39 H 0.26 6.77 8.32 -40.82 -0.34 6.43 16 40 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 42 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 43 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 351.56 15.07 5.30 5.30 Total: -1.00 -27.32 351.56 -7.76 -35.08 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -7.08 Total: 11.01 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -0.91 Total: 1.82 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: -0.19 Total: -46.58 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: 0.15 Total: -22.11 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -27.32 -7.76 -35.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327748200.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.506 kcal (2) G-P(sol) polarization free energy of solvation -27.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds