Wall clock time and date at job start Tue Mar 31 2020 06:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47227 * 2 1 4 4 N 1.46499 * 109.47546 * 179.97438 * 3 2 1 5 5 C 1.34772 * 120.00004 * 83.03417 * 4 3 2 6 6 O 1.21351 * 120.00048 * 185.31014 * 5 4 3 7 7 C 1.49451 * 120.00233 * 5.31518 * 5 4 3 8 8 O 1.21351 * 119.99474 * 354.23787 * 7 5 4 9 9 N 1.34771 * 120.00456 * 174.24777 * 7 5 4 10 10 C 1.46500 * 120.00234 * 179.72486 * 9 7 5 11 11 C 1.53000 * 109.47180 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46893 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47101 * 179.97438 * 12 11 10 14 14 H 1.07996 * 119.99836 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00139 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99810 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 119.99952 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47115 * 90.00021 * 17 15 13 19 19 H 1.48506 * 109.46865 * 209.99691 * 17 15 13 20 20 H 1.48493 * 109.46982 * 329.99637 * 17 15 13 21 21 C 1.46497 * 120.00068 * 263.04067 * 4 3 2 22 22 C 1.53004 * 117.49955 * 196.50686 * 21 4 3 23 23 C 1.53003 * 60.00175 * 252.50811 * 22 21 4 24 24 H 1.08997 * 109.47218 * 299.99997 * 1 2 3 25 25 H 1.09007 * 109.47053 * 59.99652 * 1 2 3 26 26 H 1.08995 * 109.47443 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47218 * 240.00003 * 2 1 3 28 28 H 1.09003 * 109.47114 * 119.99859 * 2 1 3 29 29 H 1.08997 * 109.47019 * 59.99881 * 3 2 1 30 30 H 1.09000 * 109.47689 * 299.99924 * 3 2 1 31 31 H 0.97004 * 120.00019 * 359.97438 * 9 7 5 32 32 H 1.08997 * 109.46991 * 299.99783 * 10 9 7 33 33 H 1.08997 * 109.47245 * 59.99443 * 10 9 7 34 34 H 1.09000 * 109.47128 * 299.99219 * 11 10 9 35 35 H 1.08997 * 109.47185 * 59.99775 * 11 10 9 36 36 H 1.08997 * 109.47273 * 300.00149 * 12 11 10 37 37 H 1.09005 * 109.47080 * 60.00236 * 12 11 10 38 38 H 0.97006 * 119.99368 * 179.97438 * 16 15 13 39 39 H 1.09001 * 115.55124 * 342.21699 * 21 4 3 40 40 H 1.09003 * 117.49478 * 359.97438 * 22 21 4 41 41 H 1.08998 * 117.50056 * 145.02254 * 22 21 4 42 42 H 1.08997 * 117.50262 * 252.51340 * 23 22 21 43 43 H 1.09003 * 117.51814 * 107.47738 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1793 1.3009 -1.1576 6 8 5.3889 1.2041 -1.1475 7 6 3.4375 1.2630 -2.4545 8 8 2.2240 1.2544 -2.4592 9 7 4.1161 1.2382 -3.6186 10 6 3.3889 1.1950 -4.8896 11 6 4.3879 1.1746 -6.0483 12 6 3.6284 1.1288 -7.3757 13 6 4.6123 1.1093 -8.5170 14 1 5.6732 1.1272 -8.3157 15 6 4.1581 1.0674 -9.8181 16 7 5.0168 1.0498 -10.8141 17 14 2.3231 1.0356 -10.1663 18 1 1.8200 2.4266 -10.2977 19 1 2.0718 0.2969 -11.4298 20 1 1.6189 0.3580 -9.0483 21 6 4.2369 1.5965 1.2602 22 6 5.7171 1.9746 1.1756 23 6 5.3119 0.5570 1.5844 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 5.0861 1.2453 -3.6148 32 1 2.7724 0.2969 -4.9251 33 1 2.7527 2.0760 -4.9744 34 1 5.0040 2.0730 -6.0127 35 1 5.0244 0.2938 -5.9637 36 1 3.0124 0.2302 -7.4111 37 1 2.9916 2.0094 -7.4605 38 1 4.6972 1.0200 -11.7295 39 1 3.6607 2.0008 2.0925 40 1 6.1463 2.1084 0.1826 41 1 6.1149 2.6280 1.9521 42 1 5.4429 0.2778 2.6298 43 1 5.4741 -0.2416 0.8605 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328616920.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:31 Heat of formation + Delta-G solvation = -38.736115 kcal Electronic energy + Delta-G solvation = -22241.513914 eV Core-core repulsion = 18902.166980 eV Total energy + Delta-G solvation = -3339.346934 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.20060 -39.06041 -37.09158 -35.96403 -35.16583 -33.34803 -32.40767 -31.49723 -27.75471 -26.43453 -25.24300 -23.14069 -22.60883 -21.87283 -21.61417 -20.69690 -19.49657 -17.81123 -16.91416 -16.64072 -16.26312 -16.12663 -15.73342 -15.04476 -14.87272 -14.47830 -14.20456 -13.87954 -13.80155 -13.51909 -13.39552 -12.74410 -12.46775 -12.31350 -12.11416 -11.99044 -11.80936 -11.69602 -11.21063 -11.14135 -11.01156 -10.93082 -10.80876 -10.51491 -10.13854 -9.96340 -9.77189 -9.28715 -9.24155 -9.09439 -8.67750 -8.57532 -6.07878 -4.06945 1.31521 2.16111 3.06773 3.29243 3.30931 3.37136 3.40324 3.67318 4.26701 4.42312 4.54493 4.62806 4.74994 4.79571 4.91090 5.06329 5.16807 5.25827 5.37770 5.41673 5.49010 5.53881 5.54830 5.64187 5.73797 5.85236 5.91001 5.96834 6.03249 6.09287 6.24265 6.36967 6.41243 6.55446 6.72229 6.82629 7.18062 7.24394 7.31766 7.65634 7.73452 7.98225 8.48520 8.96274 9.53918 11.05389 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024202 B = 0.003219 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.628707 B = 8697.370372 C = 9665.218256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.131 4.131 3 C 0.095 3.905 4 N -0.557 5.557 5 C 0.507 3.493 6 O -0.515 6.515 7 C 0.499 3.501 8 O -0.517 6.517 9 N -0.691 5.691 10 C 0.112 3.888 11 C -0.115 4.115 12 C -0.010 4.010 13 C -0.523 4.523 14 H 0.072 0.928 15 C 0.067 3.933 16 N -0.902 5.902 17 Si 0.880 3.120 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.265 1.265 21 C 0.064 3.936 22 C -0.191 4.191 23 C -0.184 4.184 24 H 0.051 0.949 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.120 0.880 31 H 0.412 0.588 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.019 0.981 37 H 0.015 0.985 38 H 0.264 0.736 39 H 0.132 0.868 40 H 0.137 0.863 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.517 0.668 26.801 27.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.169 4.169 3 C -0.027 4.027 4 N -0.288 5.288 5 C 0.290 3.710 6 O -0.392 6.392 7 C 0.280 3.720 8 O -0.394 6.394 9 N -0.342 5.342 10 C -0.010 4.010 11 C -0.153 4.153 12 C -0.048 4.048 13 C -0.561 4.561 14 H 0.091 0.909 15 C -0.135 4.135 16 N -0.541 5.541 17 Si 0.707 3.293 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.189 1.189 21 C -0.040 4.040 22 C -0.228 4.228 23 C -0.223 4.223 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.138 0.862 31 H 0.248 0.752 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.037 0.963 37 H 0.033 0.967 38 H 0.073 0.927 39 H 0.150 0.850 40 H 0.154 0.846 41 H 0.111 0.889 42 H 0.115 0.885 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.752 0.613 26.571 27.193 hybrid contribution -0.482 -0.089 -0.233 0.543 sum -6.234 0.524 26.338 27.071 Atomic orbital electron populations 1.21632 0.94885 1.01817 1.01973 1.21805 0.96526 0.96546 1.02046 1.22353 0.76771 0.98487 1.05041 1.47241 1.07774 1.69007 1.04808 1.20380 0.87382 0.77962 0.85264 1.90610 1.13621 1.48035 1.86910 1.20035 0.87769 0.78902 0.85311 1.90648 1.13155 1.48809 1.86818 1.46034 1.11678 1.71030 1.05485 1.21837 0.95810 1.02404 0.80925 1.21742 0.97612 1.02154 0.93827 1.19497 0.96416 0.96678 0.92183 1.21091 0.94420 1.51133 0.89474 0.90943 1.25032 0.97739 0.94460 0.96241 1.69916 1.34194 1.50851 0.99149 0.86771 0.86074 0.78530 0.77887 1.20238 1.21358 1.18908 1.21853 0.89472 1.05519 0.87145 1.23832 0.95501 0.97662 1.05785 1.23254 1.03080 0.93908 1.02056 0.93001 0.91913 0.92675 0.91508 0.92490 0.90889 0.86244 0.75222 0.91135 0.91109 0.91841 0.91820 0.96261 0.96697 0.92665 0.85001 0.84589 0.88947 0.88468 0.88419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.15 0.37 -0.83 16 2 C -0.13 -1.24 5.78 -26.73 -0.15 -1.39 16 3 C 0.09 0.90 5.03 -4.04 -0.02 0.88 16 4 N -0.56 -5.96 2.86 -166.61 -0.48 -6.43 16 5 C 0.51 6.54 7.47 -11.59 -0.09 6.46 16 6 O -0.52 -7.26 12.23 5.50 0.07 -7.19 16 7 C 0.50 6.95 7.68 -11.59 -0.09 6.86 16 8 O -0.52 -7.66 11.94 5.50 0.07 -7.60 16 9 N -0.69 -9.64 5.55 -60.73 -0.34 -9.98 16 10 C 0.11 1.76 5.67 -4.04 -0.02 1.73 16 11 C -0.12 -2.11 5.27 -26.73 -0.14 -2.25 16 12 C -0.01 -0.22 4.04 -27.88 -0.11 -0.34 16 13 C -0.52 -14.63 9.66 -34.44 -0.33 -14.96 16 14 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 15 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 16 N -0.90 -27.65 13.96 55.43 0.77 -26.87 16 17 Si 0.88 21.45 27.47 -169.99 -4.67 16.78 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 21 C 0.06 0.57 6.61 -67.93 -0.45 0.12 16 22 C -0.19 -1.82 9.63 -26.73 -0.26 -2.08 16 23 C -0.18 -1.68 9.87 -26.73 -0.26 -1.94 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.79 7.15 -51.93 -0.37 0.42 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.52 7.94 -51.93 -0.41 0.11 16 30 H 0.12 1.33 5.31 -51.95 -0.28 1.06 16 31 H 0.41 5.35 7.96 -40.82 -0.32 5.02 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 37 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 38 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.13 0.84 8.03 -51.93 -0.42 0.42 16 40 H 0.14 1.65 5.20 -52.17 -0.27 1.38 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.10 1.09 7.61 -51.93 -0.39 0.69 16 LS Contribution 348.56 15.07 5.25 5.25 Total: -1.00 -30.88 348.56 -8.03 -38.92 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -7.05 Total: 3.04 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -1.66 Total: -5.91 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: -0.04 Total: -43.29 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: 0.13 Total: -14.79 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.88 -8.03 -38.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328616920.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.180 kcal (2) G-P(sol) polarization free energy of solvation -30.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds