Wall clock time and date at job start Tue Mar 31 2020 05:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47113 * 2 1 4 4 C 1.52999 * 109.47097 * 119.99744 * 2 1 3 5 5 N 1.46503 * 109.47119 * 174.99742 * 4 2 1 6 6 C 1.34775 * 120.00205 * 179.97438 * 5 4 2 7 7 O 1.21283 * 119.99873 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00122 * 180.02562 * 6 5 4 9 9 C 1.53353 * 109.42023 * 300.12872 * 8 6 5 10 10 C 1.53188 * 109.15114 * 178.67709 * 9 8 6 11 11 N 1.46922 * 108.89394 * 54.57762 * 10 9 8 12 12 C 1.34776 * 120.62898 * 126.34399 * 11 10 9 13 13 O 1.21689 * 120.00329 * 354.75880 * 12 11 10 14 14 C 1.46378 * 119.99861 * 174.75957 * 12 11 10 15 15 H 1.07998 * 119.99844 * 5.00940 * 14 12 11 16 16 C 1.40048 * 119.99682 * 185.00494 * 14 12 11 17 17 N 1.30671 * 120.00214 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 119.99758 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47420 * 60.00085 * 18 16 14 20 20 H 1.48505 * 109.47398 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47020 * 300.00290 * 18 16 14 22 22 C 1.46923 * 118.74131 * 306.32015 * 11 10 9 23 23 C 1.53045 * 109.46051 * 180.02562 * 8 6 5 24 24 H 1.08995 * 109.47255 * 300.00210 * 1 2 3 25 25 H 1.09004 * 109.46704 * 59.99997 * 1 2 3 26 26 H 1.09000 * 109.46830 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47546 * 240.00374 * 2 1 3 28 28 H 1.09001 * 109.47175 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47492 * 300.00090 * 3 2 1 30 30 H 1.09005 * 109.47123 * 59.99782 * 3 2 1 31 31 H 1.09001 * 109.46757 * 55.00727 * 4 2 1 32 32 H 1.08992 * 109.47603 * 295.00105 * 4 2 1 33 33 H 0.97005 * 120.00054 * 0.02562 * 5 4 2 34 34 H 1.08995 * 109.46209 * 60.02943 * 8 6 5 35 35 H 1.09005 * 109.68105 * 58.70735 * 9 8 6 36 36 H 1.09003 * 109.47310 * 298.51707 * 9 8 6 37 37 H 1.08999 * 109.58478 * 294.72229 * 10 9 8 38 38 H 1.08999 * 109.58399 * 174.44034 * 10 9 8 39 39 H 0.96998 * 119.99786 * 180.02562 * 17 16 14 40 40 H 1.08995 * 109.58992 * 173.39368 * 22 11 10 41 41 H 1.08999 * 109.59224 * 293.68124 * 22 11 10 42 42 H 1.09003 * 109.49640 * 61.43155 * 23 8 6 43 43 H 1.09000 * 109.51983 * 301.35246 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8264 1.1906 6 6 4.1731 -1.4282 2.1912 7 8 3.5700 -1.8831 3.1400 8 6 5.6750 -1.5359 2.1311 9 6 6.0800 -2.3255 0.8803 10 6 7.6082 -2.4028 0.8078 11 7 8.1166 -2.9625 2.0675 12 6 8.9370 -4.0318 2.0622 13 8 9.1872 -4.6016 1.0165 14 6 9.5269 -4.5078 3.3144 15 1 9.2423 -4.0540 4.2522 16 6 10.4602 -5.5518 3.2963 17 7 10.8048 -6.1006 2.1615 18 14 11.2126 -6.1598 4.8943 19 1 10.1374 -6.6554 5.7906 20 1 12.1643 -7.2626 4.6054 21 1 11.9347 -5.0443 5.5574 22 6 7.7142 -2.3339 3.3331 23 6 6.1849 -2.2574 3.3807 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6054 -1.7198 1.2951 32 1 1.7517 -0.1583 2.1370 33 1 3.9825 -0.4622 0.4319 34 1 6.1092 -0.5372 2.0855 35 1 5.6983 -1.8248 -0.0095 36 1 5.6670 -3.3327 0.9369 37 1 8.0180 -1.4037 0.6601 38 1 7.9025 -3.0448 -0.0225 39 1 11.4510 -6.8239 2.1491 40 1 8.0763 -2.9318 4.1694 41 1 8.1347 -1.3301 3.3925 42 1 5.7707 -3.2652 3.4134 43 1 5.8760 -1.7081 4.2700 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333493757.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:02 Heat of formation + Delta-G solvation = -96.258241 kcal Electronic energy + Delta-G solvation = -22535.409331 eV Core-core repulsion = 19193.568051 eV Total energy + Delta-G solvation = -3341.841280 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.09300 -38.20989 -36.87949 -35.53231 -33.43208 -32.56059 -31.75296 -30.48512 -27.56585 -27.14556 -26.15130 -24.49719 -22.56970 -21.24064 -20.77882 -19.87497 -18.86723 -17.10153 -16.62916 -16.18282 -15.65022 -15.56940 -14.69889 -14.44860 -14.32500 -13.99146 -13.94432 -13.78084 -13.30623 -13.07953 -12.99452 -12.59433 -12.39061 -12.30617 -11.86548 -11.52784 -11.50688 -11.29672 -11.24578 -11.14951 -11.08317 -10.89464 -10.71154 -10.63864 -10.27620 -10.22114 -9.82790 -9.51850 -9.11728 -8.83815 -7.57925 -7.22656 -6.18909 -4.63610 2.74173 3.16559 3.17341 3.21932 3.23626 4.09883 4.39465 4.51126 4.53719 4.58539 4.66281 4.82886 5.03332 5.08136 5.17808 5.24841 5.32690 5.43036 5.45752 5.57503 5.60377 5.63538 5.72893 5.73803 5.83589 5.87985 5.93128 5.95680 6.05130 6.26187 6.28669 6.39378 6.50872 6.53860 6.54586 6.81569 7.46294 7.47399 7.63277 8.14844 8.28280 8.36002 9.03198 9.43646 10.58208 10.76778 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.037777 B = 0.003247 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.008943 B = 8622.249033 C = 8957.730634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 C -0.149 4.149 4 C 0.123 3.877 5 N -0.734 5.734 6 C 0.518 3.482 7 O -0.540 6.540 8 C -0.102 4.102 9 C -0.121 4.121 10 C 0.122 3.878 11 N -0.643 5.643 12 C 0.560 3.440 13 O -0.579 6.579 14 C -0.544 4.544 15 H 0.073 0.927 16 C 0.088 3.912 17 N -0.769 5.769 18 Si 0.906 3.094 19 H -0.267 1.267 20 H -0.281 1.281 21 H -0.268 1.268 22 C 0.122 3.878 23 C -0.113 4.113 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.399 0.601 34 H 0.093 0.907 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.043 0.957 38 H 0.087 0.913 39 H 0.269 0.731 40 H 0.096 0.904 41 H 0.043 0.957 42 H 0.071 0.929 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.334 14.125 -2.986 21.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 C -0.206 4.206 4 C -0.001 4.001 5 N -0.388 5.388 6 C 0.306 3.694 7 O -0.417 6.417 8 C -0.124 4.124 9 C -0.160 4.160 10 C -0.003 4.003 11 N -0.381 5.381 12 C 0.366 3.634 13 O -0.462 6.462 14 C -0.581 4.581 15 H 0.091 0.909 16 C -0.132 4.132 17 N -0.398 5.398 18 Si 0.731 3.269 19 H -0.192 1.192 20 H -0.206 1.206 21 H -0.192 1.192 22 C -0.002 4.002 23 C -0.152 4.152 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.095 0.905 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.234 0.766 34 H 0.111 0.889 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.061 0.939 38 H 0.105 0.895 39 H 0.079 0.921 40 H 0.114 0.886 41 H 0.061 0.939 42 H 0.090 0.910 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.510 13.315 -2.976 20.657 hybrid contribution 0.430 0.021 0.427 0.607 sum -15.080 13.336 -2.549 20.291 Atomic orbital electron populations 1.21761 0.94107 1.02230 1.02171 1.21366 0.96696 0.96724 0.98031 1.21873 1.01171 0.95527 1.02061 1.21392 0.80316 1.00567 0.97829 1.46082 1.07478 1.60915 1.24278 1.20954 0.90420 0.76472 0.81600 1.90678 1.70512 1.47107 1.33357 1.21402 0.90382 1.01552 0.99022 1.21985 0.98701 1.00426 0.94854 1.21088 0.90608 0.97948 0.90636 1.48195 1.52423 1.33917 1.03594 1.18239 0.77143 0.77539 0.90489 1.90585 1.63627 1.57643 1.34319 1.20960 1.25532 1.19073 0.92519 0.90895 1.25728 0.95401 0.95204 0.96867 1.70004 1.24918 1.18761 1.26072 0.86456 0.79237 0.78744 0.82482 1.19198 1.20579 1.19241 1.21450 0.91922 0.97450 0.89400 1.21793 0.96961 1.01158 0.95287 0.92352 0.92197 0.92310 0.90464 0.92508 0.92412 0.92427 0.91651 0.91661 0.76589 0.88866 0.91850 0.91259 0.93859 0.89478 0.92051 0.88600 0.93919 0.91018 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.19 37.16 0.34 -0.53 16 2 C -0.11 -0.74 2.96 -90.62 -0.27 -1.01 16 3 C -0.15 -0.92 9.07 37.16 0.34 -0.58 16 4 C 0.12 1.17 5.06 -4.04 -0.02 1.15 16 5 N -0.73 -7.72 5.17 -60.30 -0.31 -8.03 16 6 C 0.52 7.38 7.16 -10.99 -0.08 7.30 16 7 O -0.54 -9.75 15.98 5.55 0.09 -9.67 16 8 C -0.10 -1.44 2.49 -91.57 -0.23 -1.67 16 9 C -0.12 -1.80 5.29 -26.45 -0.14 -1.94 16 10 C 0.12 2.27 6.43 -3.71 -0.02 2.24 16 11 N -0.64 -14.43 2.97 -174.44 -0.52 -14.95 16 12 C 0.56 15.90 7.62 -12.99 -0.10 15.80 16 13 O -0.58 -18.65 14.45 5.20 0.08 -18.58 16 14 C -0.54 -15.26 8.86 -35.63 -0.32 -15.57 16 15 H 0.07 1.86 5.69 -52.49 -0.30 1.56 16 16 C 0.09 2.45 5.50 -17.37 -0.10 2.35 16 17 N -0.77 -23.05 11.84 55.55 0.66 -22.39 16 18 Si 0.91 20.15 29.56 -169.99 -5.02 15.12 16 19 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 20 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 22 C 0.12 2.27 6.32 -3.71 -0.02 2.25 16 23 C -0.11 -1.87 4.65 -26.61 -0.12 -1.99 16 24 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.35 7.18 -51.93 -0.37 -0.03 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.40 3.25 7.06 -40.82 -0.29 2.97 16 34 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.06 0.72 7.54 -51.93 -0.39 0.33 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 1.84 6.99 -51.93 -0.36 1.48 16 39 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 40 H 0.10 1.90 5.37 -51.93 -0.28 1.62 16 41 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 1.36 8.13 -51.93 -0.42 0.94 16 43 H 0.07 1.06 8.07 -51.93 -0.42 0.65 16 LS Contribution 343.91 15.07 5.18 5.18 Total: -1.00 -35.60 343.91 -7.63 -43.23 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -7.04 Total: 2.28 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: -0.74 Total: 7.81 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: -0.17 Total: -45.38 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: 0.16 Total: -28.24 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.60 -7.63 -43.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333493757.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.027 kcal (2) G-P(sol) polarization free energy of solvation -35.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds