Wall clock time and date at job start Tue Mar 31 2020 06:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47131 * 2 1 4 4 H 1.09000 * 109.47754 * 305.00484 * 3 2 1 5 5 C 1.50701 * 109.47279 * 185.00052 * 3 2 1 6 6 O 1.21279 * 119.99863 * 240.00133 * 5 3 2 7 7 N 1.34769 * 119.99833 * 60.00378 * 5 3 2 8 8 C 1.46502 * 120.00125 * 359.97438 * 7 5 3 9 9 C 1.46500 * 120.00163 * 179.97438 * 7 5 3 10 10 H 1.08998 * 109.46845 * 0.02562 * 9 7 5 11 11 C 1.52997 * 109.47473 * 240.00131 * 9 7 5 12 12 C 1.50706 * 109.47187 * 119.99734 * 9 7 5 13 13 H 1.07998 * 119.99629 * 0.02562 * 12 9 7 14 14 C 1.37875 * 119.99955 * 179.97438 * 12 9 7 15 15 N 1.31510 * 120.00308 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 119.99908 * 180.02562 * 14 12 9 17 17 H 1.48507 * 109.46754 * 90.00468 * 16 14 12 18 18 H 1.48498 * 109.47278 * 210.00299 * 16 14 12 19 19 H 1.48498 * 109.47109 * 330.00728 * 16 14 12 20 20 N 1.46512 * 109.46864 * 65.00263 * 3 2 1 21 21 C 1.46754 * 124.35003 * 240.00087 * 20 3 2 22 22 C 1.54476 * 105.47417 * 197.01570 * 21 20 3 23 23 C 1.54628 * 101.76588 * 334.58563 * 22 21 20 24 24 C 1.34420 * 124.34786 * 59.70125 * 20 3 2 25 25 O 1.21284 * 124.94179 * 359.56522 * 24 20 3 26 26 H 1.09000 * 109.46774 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46539 * 299.99610 * 1 2 3 28 28 H 1.09001 * 109.47365 * 59.99613 * 1 2 3 29 29 H 1.09007 * 109.46860 * 240.00696 * 2 1 3 30 30 H 1.08993 * 109.47204 * 120.00680 * 2 1 3 31 31 H 1.08993 * 109.47565 * 270.00429 * 8 7 5 32 32 H 1.09007 * 109.46761 * 30.00462 * 8 7 5 33 33 H 1.09002 * 109.46792 * 150.00115 * 8 7 5 34 34 H 1.09002 * 109.47153 * 59.99757 * 11 9 7 35 35 H 1.09001 * 109.46832 * 299.99948 * 11 9 7 36 36 H 1.09004 * 109.47261 * 179.97438 * 11 9 7 37 37 H 0.96998 * 120.00365 * 179.97438 * 15 14 12 38 38 H 1.09007 * 110.24547 * 316.01348 * 21 20 3 39 39 H 1.09001 * 110.25152 * 78.01411 * 21 20 3 40 40 H 1.09003 * 110.97111 * 92.70004 * 22 21 20 41 41 H 1.08995 * 110.97092 * 216.46229 * 22 21 20 42 42 H 1.08999 * 110.48779 * 143.47559 * 23 22 21 43 43 H 1.09000 * 110.48353 * 265.98998 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5420 1.4443 -0.1238 6 8 4.2216 1.9435 0.7477 7 7 4.1297 0.8912 -1.2031 8 6 3.3087 0.2877 -2.2557 9 6 5.5898 0.8935 -1.3239 10 1 6.0256 1.3815 -0.4522 11 6 5.9957 1.6513 -2.5895 12 6 6.0892 -0.5260 -1.4063 13 1 5.3890 -1.3476 -1.3726 14 6 7.4399 -0.7757 -1.5258 15 7 8.2924 0.2247 -1.5674 16 14 8.0589 -2.5352 -1.6287 17 1 8.1071 -2.9605 -3.0508 18 1 9.4204 -2.6161 -1.0414 19 1 7.1412 -3.4276 -0.8760 20 7 1.6525 2.0974 1.2520 21 6 0.8076 3.2946 1.3331 22 6 1.0291 3.8598 2.7536 23 6 1.4533 2.5941 3.5340 24 6 2.0203 1.6756 2.4741 25 8 2.7087 0.7017 2.6947 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.1465 -0.7663 -2.0307 32 1 2.3480 0.8005 -2.3060 33 1 3.8205 0.3802 -3.2137 34 1 5.6345 2.6780 -2.5298 35 1 5.5599 1.1628 -3.4610 36 1 7.0821 1.6534 -2.6790 37 1 9.2427 0.0490 -1.6511 38 1 1.1152 4.0248 0.5845 39 1 -0.2398 3.0275 1.1926 40 1 1.8246 4.6051 2.7573 41 1 0.1056 4.2753 3.1565 42 1 2.2131 2.8400 4.2758 43 1 0.5891 2.1336 4.0126 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338414987.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:54 Heat of formation + Delta-G solvation = -59.411398 kcal Electronic energy + Delta-G solvation = -23944.826959 eV Core-core repulsion = 20604.583478 eV Total energy + Delta-G solvation = -3340.243481 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.58021 -38.69108 -36.09432 -35.26091 -34.80053 -32.66346 -30.89763 -29.51013 -27.48742 -26.83075 -26.08999 -25.14998 -22.17600 -21.85702 -21.45018 -19.23740 -18.10528 -16.85216 -16.64882 -16.41394 -15.90677 -15.25996 -14.66544 -14.51091 -14.27430 -14.09348 -13.53653 -13.39376 -13.10597 -12.91783 -12.71912 -12.59082 -12.46166 -12.17683 -11.76887 -11.55794 -11.52275 -11.51327 -11.08907 -11.01993 -10.95317 -10.82086 -10.64812 -10.55020 -10.21353 -10.10356 -9.34690 -9.17170 -9.05128 -8.40666 -8.26588 -7.52254 -6.01375 -4.08626 2.88440 3.14654 3.30577 3.37596 3.40003 3.44870 4.06192 4.42854 4.46179 4.48351 4.76370 4.99317 5.03718 5.06483 5.15525 5.29603 5.33156 5.39062 5.47401 5.57358 5.63625 5.70341 5.77896 5.81215 5.94075 5.97309 6.04111 6.13036 6.26810 6.44834 6.69064 6.79274 6.85141 7.09331 7.39533 7.48254 7.57819 7.77154 8.07066 8.25755 8.52382 8.59659 8.90449 9.13079 9.57587 11.04060 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022746 B = 0.005043 C = 0.004930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.687226 B = 5551.331023 C = 5678.284971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.151 4.151 3 C 0.145 3.855 4 H 0.103 0.897 5 C 0.495 3.505 6 O -0.532 6.532 7 N -0.592 5.592 8 C 0.084 3.916 9 C 0.259 3.741 10 H 0.062 0.938 11 C -0.146 4.146 12 C -0.521 4.521 13 H 0.059 0.941 14 C 0.064 3.936 15 N -0.890 5.890 16 Si 0.898 3.102 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 N -0.606 5.606 21 C 0.106 3.894 22 C -0.130 4.130 23 C -0.154 4.154 24 C 0.523 3.477 25 O -0.510 6.510 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.010 0.990 35 H 0.030 0.970 36 H 0.093 0.907 37 H 0.262 0.738 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.099 0.901 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.969 6.041 1.849 19.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.189 4.189 3 C 0.038 3.962 4 H 0.121 0.879 5 C 0.280 3.720 6 O -0.409 6.409 7 N -0.325 5.325 8 C -0.059 4.059 9 C 0.159 3.841 10 H 0.080 0.920 11 C -0.204 4.204 12 C -0.560 4.560 13 H 0.077 0.923 14 C -0.138 4.138 15 N -0.528 5.528 16 Si 0.726 3.274 17 H -0.207 1.207 18 H -0.211 1.211 19 H -0.199 1.199 20 N -0.341 5.341 21 C -0.017 4.017 22 C -0.168 4.168 23 C -0.194 4.194 24 C 0.310 3.690 25 O -0.384 6.384 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.110 0.890 30 H 0.102 0.898 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.029 0.971 35 H 0.049 0.951 36 H 0.112 0.888 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.117 0.883 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -17.981 5.782 2.352 19.034 hybrid contribution 0.379 -0.909 -0.269 1.021 sum -17.603 4.873 2.083 18.383 Atomic orbital electron populations 1.21694 0.95279 1.01603 1.01333 1.22158 0.96262 0.94962 1.05493 1.20884 0.93860 0.95063 0.86365 0.87879 1.20521 0.89454 0.79506 0.82541 1.90656 1.64771 1.46051 1.39427 1.48152 1.09436 1.55737 1.19140 1.21709 0.93988 0.97537 0.92714 1.18914 0.72789 0.96430 0.95937 0.92022 1.22092 1.04648 0.95548 0.98142 1.21315 0.92229 0.91703 1.50753 0.92326 1.24885 0.96631 0.97334 0.94976 1.69876 1.02496 1.30398 1.50038 0.86495 0.78227 0.84667 0.78027 1.20656 1.21129 1.19912 1.47893 1.51349 1.29288 1.05542 1.22034 0.94398 0.86961 0.98330 1.22559 1.02764 0.97297 0.94154 1.22296 1.02849 0.96044 0.98235 1.20659 0.79179 0.85156 0.83959 1.90744 1.36357 1.27934 1.83370 0.92551 0.93020 0.92898 0.88955 0.89812 0.92901 0.93038 0.90821 0.97113 0.95109 0.88809 0.92770 0.90687 0.91321 0.89940 0.89496 0.88250 0.88386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.80 37.16 0.36 -1.17 16 2 C -0.15 -2.22 5.01 -26.73 -0.13 -2.35 16 3 C 0.15 2.31 1.87 -69.08 -0.13 2.18 16 4 H 0.10 1.31 7.33 -51.93 -0.38 0.93 16 5 C 0.50 10.85 6.78 -10.99 -0.07 10.77 16 6 O -0.53 -14.11 14.25 -8.59 -0.12 -14.24 16 7 N -0.59 -13.04 2.75 -175.26 -0.48 -13.52 16 8 C 0.08 1.42 8.05 59.85 0.48 1.90 16 9 C 0.26 6.87 2.64 -69.08 -0.18 6.69 16 10 H 0.06 1.92 6.90 -51.93 -0.36 1.57 16 11 C -0.15 -3.55 8.95 37.16 0.33 -3.21 16 12 C -0.52 -14.64 8.37 -34.44 -0.29 -14.93 16 13 H 0.06 1.63 7.65 -52.49 -0.40 1.23 16 14 C 0.06 1.80 5.30 -17.82 -0.09 1.70 16 15 N -0.89 -25.93 11.32 55.43 0.63 -25.31 16 16 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 20 N -0.61 -9.00 2.07 -166.16 -0.34 -9.35 16 21 C 0.11 1.04 7.30 -3.13 -0.02 1.02 16 22 C -0.13 -1.12 7.18 -25.10 -0.18 -1.30 16 23 C -0.15 -1.77 6.86 -26.74 -0.18 -1.96 16 24 C 0.52 9.02 6.68 -10.86 -0.07 8.94 16 25 O -0.51 -11.52 15.36 -8.59 -0.13 -11.65 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.56 7.75 -51.93 -0.40 0.15 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.09 1.32 4.45 -51.93 -0.23 1.09 16 30 H 0.08 1.54 6.60 -51.93 -0.34 1.19 16 31 H 0.05 0.87 6.86 -51.93 -0.36 0.51 16 32 H 0.05 0.66 6.06 -51.92 -0.31 0.34 16 33 H 0.07 1.24 6.43 -51.93 -0.33 0.90 16 34 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 35 H 0.03 0.68 6.66 -51.93 -0.35 0.33 16 36 H 0.09 2.51 6.07 -51.93 -0.32 2.20 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 43 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 335.74 15.07 5.06 5.06 Total: -1.00 -36.30 335.74 -7.32 -43.62 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -6.72 Total: 0.31 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: -0.18 Total: 8.27 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: -0.20 Total: -48.18 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.25 Total: -25.89 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -36.30 -7.32 -43.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338414987.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.788 kcal (2) G-P(sol) polarization free energy of solvation -36.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds