Wall clock time and date at job start Tue Mar 31 2020 06:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46967 * 2 1 4 4 H 1.08998 * 109.47134 * 55.00293 * 3 2 1 5 5 C 1.50705 * 109.46661 * 175.00159 * 3 2 1 6 6 O 1.21281 * 120.00093 * 120.00210 * 5 3 2 7 7 N 1.34776 * 119.99848 * 299.99980 * 5 3 2 8 8 C 1.46497 * 120.00223 * 0.02562 * 7 5 3 9 9 C 1.46506 * 119.99540 * 180.02562 * 7 5 3 10 10 H 1.08992 * 109.47307 * 359.97438 * 9 7 5 11 11 C 1.52994 * 109.46838 * 120.00258 * 9 7 5 12 12 C 1.50705 * 109.46973 * 239.99854 * 9 7 5 13 13 H 1.08007 * 119.99965 * 0.02562 * 12 9 7 14 14 C 1.37871 * 120.00132 * 180.02562 * 12 9 7 15 15 N 1.31518 * 120.00065 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 120.00103 * 180.02562 * 14 12 9 17 17 H 1.48495 * 109.46852 * 89.99844 * 16 14 12 18 18 H 1.48499 * 109.46837 * 210.00008 * 16 14 12 19 19 H 1.48500 * 109.46764 * 329.99873 * 16 14 12 20 20 N 1.46496 * 109.47596 * 295.00099 * 3 2 1 21 21 C 1.46764 * 124.35106 * 120.00102 * 20 3 2 22 22 C 1.54484 * 105.47181 * 197.04087 * 21 20 3 23 23 C 1.54624 * 101.76286 * 334.58202 * 22 21 20 24 24 C 1.34424 * 124.34587 * 300.02781 * 20 3 2 25 25 O 1.21279 * 124.94294 * 359.30176 * 24 20 3 26 26 H 1.08998 * 109.47082 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47137 * 299.99764 * 1 2 3 28 28 H 1.09000 * 109.47517 * 59.99661 * 1 2 3 29 29 H 1.09000 * 109.46679 * 239.99964 * 2 1 3 30 30 H 1.09000 * 109.47074 * 120.00638 * 2 1 3 31 31 H 1.08999 * 109.46672 * 89.99939 * 8 7 5 32 32 H 1.08998 * 109.47128 * 209.99686 * 8 7 5 33 33 H 1.08998 * 109.47186 * 330.00049 * 8 7 5 34 34 H 1.09003 * 109.47925 * 59.99964 * 11 9 7 35 35 H 1.09005 * 109.47007 * 179.97438 * 11 9 7 36 36 H 1.09003 * 109.47589 * 299.99391 * 11 9 7 37 37 H 0.96996 * 120.00388 * 180.02562 * 15 14 12 38 38 H 1.09002 * 110.24057 * 316.03952 * 21 20 3 39 39 H 1.08999 * 110.24524 * 78.03907 * 21 20 3 40 40 H 1.09000 * 110.96838 * 92.70823 * 22 21 20 41 41 H 1.08999 * 110.96319 * 216.46846 * 22 21 20 42 42 H 1.09000 * 110.48926 * 266.12016 * 23 22 21 43 43 H 1.09001 * 110.48194 * 143.48372 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 8 4.2217 1.9434 -0.7478 7 7 4.1297 0.8910 1.2031 8 6 3.3087 0.2875 2.2556 9 6 5.5898 0.8932 1.3236 10 1 6.0256 1.3812 0.4520 11 6 5.9958 1.6508 2.5893 12 6 6.0892 -0.5263 1.4060 13 1 5.3890 -1.3480 1.3715 14 6 7.4398 -0.7762 1.5253 15 7 8.2925 0.2243 1.5668 16 14 8.0589 -2.5357 1.6267 17 1 8.3387 -3.0415 0.2589 18 1 9.3045 -2.5764 2.4341 19 1 7.0253 -3.3878 2.2677 20 7 1.6524 2.0975 -1.2517 21 6 0.8076 3.2949 -1.3328 22 6 0.3189 3.3561 -2.7970 23 6 1.4360 2.5823 -3.5347 24 6 2.0246 1.6788 -2.4737 25 8 2.7333 0.7195 -2.6932 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.1466 -0.7666 2.0304 32 1 3.8206 0.3798 3.2135 33 1 2.3481 0.8001 2.3060 34 1 5.5601 1.1624 3.4609 35 1 7.0822 1.6521 2.6793 36 1 5.6347 2.6776 2.5298 37 1 9.2427 0.0486 1.6504 38 1 -0.0414 3.2039 -0.6552 39 1 1.3898 4.1843 -1.0919 40 1 -0.6424 2.8547 -2.9087 41 1 0.2624 4.3871 -3.1464 42 1 2.1922 3.2709 -3.9117 43 1 1.0168 1.9916 -4.3492 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338414989.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:01 Heat of formation + Delta-G solvation = -59.351759 kcal Electronic energy + Delta-G solvation = -23935.802238 eV Core-core repulsion = 20595.561343 eV Total energy + Delta-G solvation = -3340.240895 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.58421 -38.69271 -36.10043 -35.26141 -34.78451 -32.66039 -30.93591 -29.50469 -27.49592 -26.80949 -26.08303 -25.14797 -22.19206 -21.86908 -21.44393 -19.23623 -18.12378 -17.02351 -16.56732 -16.30453 -15.70564 -15.26648 -15.04198 -14.40782 -14.32200 -14.04562 -13.52874 -13.27187 -13.11550 -12.95245 -12.69927 -12.59284 -12.52322 -12.17246 -11.76736 -11.57019 -11.53825 -11.51220 -11.12808 -10.99437 -10.96306 -10.84953 -10.65197 -10.55678 -10.18978 -10.10040 -9.33775 -9.16794 -9.05941 -8.40111 -8.25978 -7.52021 -6.01218 -4.08477 2.93353 3.09813 3.32116 3.38052 3.38940 3.44349 4.06474 4.42576 4.43505 4.48042 4.72721 4.98479 5.04469 5.04840 5.15592 5.29431 5.32285 5.39664 5.50877 5.58155 5.60057 5.70818 5.74149 5.80138 5.90659 5.97047 6.04240 6.12822 6.26678 6.44587 6.69224 6.79492 6.85343 7.09573 7.39621 7.48487 7.58012 7.77333 8.07207 8.25939 8.52843 8.59946 8.90600 9.13334 9.57735 11.04223 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023566 B = 0.004976 C = 0.004880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.862269 B = 5625.938105 C = 5736.611356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.150 4.150 3 C 0.145 3.855 4 H 0.103 0.897 5 C 0.495 3.505 6 O -0.532 6.532 7 N -0.592 5.592 8 C 0.085 3.915 9 C 0.259 3.741 10 H 0.062 0.938 11 C -0.146 4.146 12 C -0.521 4.521 13 H 0.058 0.942 14 C 0.064 3.936 15 N -0.890 5.890 16 Si 0.898 3.102 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 N -0.606 5.606 21 C 0.105 3.895 22 C -0.129 4.129 23 C -0.155 4.155 24 C 0.523 3.477 25 O -0.510 6.510 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.030 0.970 35 H 0.093 0.907 36 H 0.010 0.990 37 H 0.262 0.738 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.102 0.898 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.297 5.818 -1.867 20.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.188 4.188 3 C 0.038 3.962 4 H 0.121 0.879 5 C 0.280 3.720 6 O -0.409 6.409 7 N -0.325 5.325 8 C -0.059 4.059 9 C 0.159 3.841 10 H 0.080 0.920 11 C -0.204 4.204 12 C -0.560 4.560 13 H 0.077 0.923 14 C -0.138 4.138 15 N -0.528 5.528 16 Si 0.726 3.274 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.199 1.199 20 N -0.341 5.341 21 C -0.018 4.018 22 C -0.167 4.167 23 C -0.195 4.195 24 C 0.310 3.690 25 O -0.383 6.383 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.101 0.899 30 H 0.111 0.889 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.049 0.951 35 H 0.112 0.888 36 H 0.029 0.971 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.120 0.880 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -18.300 5.566 -2.360 19.272 hybrid contribution 0.407 -0.888 0.248 1.008 sum -17.893 4.678 -2.112 18.614 Atomic orbital electron populations 1.21693 0.95270 1.01609 1.01356 1.22150 0.96270 0.94949 1.05449 1.20868 0.93885 0.95032 0.86376 0.87880 1.20526 0.89455 0.79513 0.82536 1.90656 1.64771 1.46047 1.39420 1.48156 1.09438 1.55749 1.19141 1.21704 0.93982 0.97524 0.92719 1.18911 0.72788 0.96429 0.95934 0.92034 1.22090 1.04651 0.95549 0.98138 1.21314 0.92230 0.91699 1.50753 0.92332 1.24887 0.96633 0.97331 0.94972 1.69880 1.02479 1.30381 1.50073 0.86495 0.78191 0.84604 0.78103 1.20613 1.21175 1.19929 1.47891 1.51681 1.28958 1.05554 1.22047 0.94070 0.88066 0.97654 1.22553 0.98382 1.01653 0.94097 1.22315 0.99365 0.99577 0.98241 1.20650 0.79628 0.84758 0.83988 1.90747 1.35778 1.28395 1.83406 0.92559 0.92911 0.92969 0.89886 0.88946 0.92911 0.90823 0.93045 0.95107 0.88808 0.97106 0.92774 0.90632 0.91283 0.90187 0.89402 0.87963 0.88506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.80 37.16 0.36 -1.16 16 2 C -0.15 -2.21 5.01 -26.73 -0.13 -2.34 16 3 C 0.15 2.31 1.87 -69.08 -0.13 2.18 16 4 H 0.10 1.31 7.33 -51.93 -0.38 0.93 16 5 C 0.50 10.86 6.77 -10.98 -0.07 10.79 16 6 O -0.53 -14.15 14.19 -9.79 -0.14 -14.29 16 7 N -0.59 -13.07 2.75 -175.27 -0.48 -13.55 16 8 C 0.08 1.42 8.05 59.85 0.48 1.90 16 9 C 0.26 6.88 2.64 -69.08 -0.18 6.70 16 10 H 0.06 1.92 6.90 -51.93 -0.36 1.57 16 11 C -0.15 -3.55 8.95 37.15 0.33 -3.22 16 12 C -0.52 -14.65 8.37 -34.44 -0.29 -14.94 16 13 H 0.06 1.63 7.65 -52.48 -0.40 1.23 16 14 C 0.06 1.80 5.30 -17.82 -0.09 1.71 16 15 N -0.89 -25.95 11.32 55.43 0.63 -25.33 16 16 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 20 N -0.61 -9.00 2.08 -166.16 -0.35 -9.35 16 21 C 0.10 1.03 7.30 -3.12 -0.02 1.00 16 22 C -0.13 -1.00 7.18 -25.10 -0.18 -1.18 16 23 C -0.15 -1.77 6.86 -26.74 -0.18 -1.96 16 24 C 0.52 9.00 6.69 -10.86 -0.07 8.93 16 25 O -0.51 -11.53 15.33 -9.79 -0.15 -11.68 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.56 7.75 -51.93 -0.40 0.16 16 29 H 0.08 1.52 6.66 -51.93 -0.35 1.17 16 30 H 0.09 1.32 4.45 -51.93 -0.23 1.09 16 31 H 0.05 0.87 6.86 -51.93 -0.36 0.51 16 32 H 0.07 1.24 6.43 -51.93 -0.33 0.91 16 33 H 0.05 0.66 6.06 -51.93 -0.31 0.34 16 34 H 0.03 0.68 6.66 -51.93 -0.35 0.33 16 35 H 0.09 2.51 6.07 -51.93 -0.32 2.20 16 36 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 335.71 15.07 5.06 5.06 Total: -1.00 -36.36 335.71 -7.36 -43.72 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -6.72 Total: 0.17 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: -0.18 Total: 8.41 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: -0.20 Total: -48.22 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.29 Total: -25.96 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -36.36 -7.36 -43.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338414989.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.630 kcal (2) G-P(sol) polarization free energy of solvation -36.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds