Wall clock time and date at job start Tue Mar 31 2020 06:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47012 * 2 1 4 4 H 1.08999 * 109.47095 * 305.00542 * 3 2 1 5 5 C 1.50699 * 109.47229 * 185.00152 * 3 2 1 6 6 O 1.21281 * 119.99722 * 240.00572 * 5 3 2 7 7 N 1.34771 * 120.00070 * 60.00245 * 5 3 2 8 8 C 1.46505 * 119.99781 * 359.97438 * 7 5 3 9 9 C 1.46500 * 120.00141 * 180.02562 * 7 5 3 10 10 H 1.09000 * 109.47175 * 359.97438 * 9 7 5 11 11 C 1.53006 * 109.46998 * 119.99854 * 9 7 5 12 12 C 1.50697 * 109.46896 * 239.99783 * 9 7 5 13 13 H 1.07994 * 120.00496 * 0.02562 * 12 9 7 14 14 C 1.37887 * 119.99690 * 179.97438 * 12 9 7 15 15 N 1.31515 * 119.99477 * 180.02562 * 14 12 9 16 16 Si 1.86789 * 119.99942 * 359.97438 * 14 12 9 17 17 H 1.48505 * 109.47181 * 90.00449 * 16 14 12 18 18 H 1.48500 * 109.47253 * 209.99840 * 16 14 12 19 19 H 1.48501 * 109.47537 * 330.00117 * 16 14 12 20 20 N 1.46501 * 109.46753 * 65.00179 * 3 2 1 21 21 C 1.46765 * 124.35126 * 239.99501 * 20 3 2 22 22 C 1.54480 * 105.47540 * 197.01899 * 21 20 3 23 23 C 1.54624 * 101.76668 * 334.58659 * 22 21 20 24 24 C 1.34421 * 124.35009 * 59.70264 * 20 3 2 25 25 O 1.21275 * 124.94033 * 359.56297 * 24 20 3 26 26 H 1.09002 * 109.46792 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46817 * 299.99549 * 1 2 3 28 28 H 1.08999 * 109.46890 * 59.99626 * 1 2 3 29 29 H 1.09000 * 109.46817 * 240.00451 * 2 1 3 30 30 H 1.09000 * 109.47395 * 120.00228 * 2 1 3 31 31 H 1.09004 * 109.47130 * 270.00038 * 8 7 5 32 32 H 1.08997 * 109.47212 * 29.99790 * 8 7 5 33 33 H 1.09003 * 109.46772 * 150.00403 * 8 7 5 34 34 H 1.09001 * 109.47002 * 179.97438 * 11 9 7 35 35 H 1.08993 * 109.46955 * 300.00226 * 11 9 7 36 36 H 1.09000 * 109.47050 * 60.00054 * 11 9 7 37 37 H 0.97006 * 119.99768 * 179.97438 * 15 14 12 38 38 H 1.08996 * 110.24377 * 316.02332 * 21 20 3 39 39 H 1.09008 * 110.24085 * 78.02224 * 21 20 3 40 40 H 1.09005 * 110.96603 * 92.70845 * 22 21 20 41 41 H 1.08998 * 110.96635 * 216.46697 * 22 21 20 42 42 H 1.08994 * 110.48909 * 143.47501 * 23 22 21 43 43 H 1.08996 * 110.48789 * 265.99043 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4444 -0.1239 6 8 4.2216 1.9436 0.7478 7 7 4.1298 0.8913 -1.2032 8 6 3.3086 0.2878 -2.2557 9 6 5.5898 0.8926 -1.3233 10 1 6.0257 1.3809 -0.4517 11 6 6.0959 -0.5489 -1.4074 12 6 5.9906 1.6392 -2.5695 13 1 5.2335 2.0700 -3.2079 14 6 7.3240 1.7732 -2.8941 15 7 7.6737 2.4252 -3.9814 16 14 8.6335 1.0299 -1.7888 17 1 8.9221 -0.3590 -2.2282 18 1 9.8729 1.8434 -1.8736 19 1 8.1467 1.0142 -0.3859 20 7 1.6525 2.0974 1.2519 21 6 0.8076 3.2948 1.3331 22 6 1.0291 3.8600 2.7536 23 6 1.4533 2.5943 3.5340 24 6 2.0203 1.6756 2.4740 25 8 2.7086 0.7018 2.6947 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.1466 -0.7664 -2.0306 32 1 2.3480 0.8004 -2.3060 33 1 3.8205 0.3802 -3.2137 34 1 7.1822 -0.5479 -1.4973 35 1 5.8060 -1.0888 -0.5061 36 1 5.6600 -1.0367 -2.2792 37 1 8.6118 2.5197 -4.2096 38 1 1.1151 4.0248 0.5844 39 1 -0.2398 3.0275 1.1925 40 1 1.8245 4.6053 2.7572 41 1 0.1055 4.2754 3.1565 42 1 2.2130 2.8401 4.2758 43 1 0.5891 2.1337 4.0126 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338414990.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:04 Heat of formation + Delta-G solvation = -52.555797 kcal Electronic energy + Delta-G solvation = -23980.743953 eV Core-core repulsion = 20640.797753 eV Total energy + Delta-G solvation = -3339.946200 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.68152 -38.85242 -36.18701 -35.46032 -34.91155 -32.62787 -30.99167 -30.38441 -27.54908 -26.99939 -26.24384 -25.08120 -22.26553 -21.92395 -21.65197 -19.31289 -18.18842 -17.01468 -16.86454 -16.52574 -16.08947 -15.43617 -14.90280 -14.55835 -14.47974 -14.09812 -13.58841 -13.44371 -13.20565 -12.98104 -12.88957 -12.64158 -12.51108 -12.32533 -12.19039 -11.93900 -11.84727 -11.59923 -11.51669 -11.20571 -11.05987 -10.99817 -10.71618 -10.67435 -10.11846 -9.62009 -9.46036 -9.34370 -9.17104 -8.62293 -8.40159 -7.69336 -6.14498 -4.14719 2.78360 3.06126 3.25366 3.29486 3.38721 3.43866 3.87820 4.37016 4.38852 4.42973 4.73263 4.88093 4.95762 4.97714 5.09713 5.19874 5.26275 5.36352 5.43113 5.49073 5.60677 5.65404 5.70764 5.75651 5.84740 5.90803 5.95644 6.05443 6.20696 6.28418 6.33025 6.41189 6.51726 6.62565 6.87791 7.16706 7.30954 7.39489 7.65172 8.19153 8.44016 8.48657 8.84663 8.95507 9.47340 10.98054 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022866 B = 0.005292 C = 0.004972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.230124 B = 5289.796284 C = 5630.105536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.150 4.150 3 C 0.145 3.855 4 H 0.108 0.892 5 C 0.498 3.502 6 O -0.533 6.533 7 N -0.586 5.586 8 C 0.079 3.921 9 C 0.231 3.769 10 H 0.061 0.939 11 C -0.160 4.160 12 C -0.527 4.527 13 H 0.079 0.921 14 C 0.076 3.924 15 N -0.896 5.896 16 Si 0.883 3.117 17 H -0.277 1.277 18 H -0.294 1.294 19 H -0.263 1.263 20 N -0.604 5.604 21 C 0.105 3.895 22 C -0.130 4.130 23 C -0.154 4.154 24 C 0.525 3.475 25 O -0.517 6.517 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.086 0.914 34 H 0.049 0.951 35 H 0.033 0.967 36 H 0.055 0.945 37 H 0.266 0.734 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.259 -0.920 8.474 20.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.189 4.189 3 C 0.038 3.962 4 H 0.126 0.874 5 C 0.283 3.717 6 O -0.409 6.409 7 N -0.318 5.318 8 C -0.064 4.064 9 C 0.129 3.871 10 H 0.079 0.921 11 C -0.218 4.218 12 C -0.565 4.565 13 H 0.097 0.903 14 C -0.127 4.127 15 N -0.533 5.533 16 Si 0.713 3.287 17 H -0.204 1.204 18 H -0.222 1.222 19 H -0.188 1.188 20 N -0.339 5.339 21 C -0.018 4.018 22 C -0.168 4.168 23 C -0.194 4.194 24 C 0.313 3.687 25 O -0.392 6.392 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.110 0.890 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.105 0.895 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.106 0.894 42 H 0.118 0.882 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.335 -1.142 8.872 19.507 hybrid contribution 0.804 -0.277 0.204 0.874 sum -16.531 -1.419 9.075 18.912 Atomic orbital electron populations 1.21694 0.95081 1.01662 1.01547 1.22170 0.96573 0.94896 1.05214 1.20869 0.93468 0.95174 0.86659 0.87436 1.20555 0.89681 0.79129 0.82309 1.90655 1.64813 1.45519 1.39940 1.47775 1.08393 1.56525 1.19095 1.21818 0.94714 0.96507 0.93393 1.19261 0.75570 0.92928 0.99330 0.92121 1.22431 1.00284 0.99184 0.99869 1.21156 0.93409 1.34804 1.07111 0.90335 1.24850 0.98314 0.94676 0.94839 1.69877 1.17443 1.41490 1.24522 0.86922 0.81134 0.78444 0.82248 1.20364 1.22163 1.18808 1.47893 1.51227 1.29309 1.05451 1.22071 0.94395 0.86917 0.98453 1.22567 1.02879 0.97265 0.94086 1.22294 1.02855 0.96079 0.98182 1.20666 0.79025 0.85032 0.83990 1.90701 1.36810 1.28152 1.83500 0.92514 0.92957 0.92699 0.88993 0.89941 0.93345 0.92505 0.89517 0.93263 0.94762 0.92614 0.92460 0.90434 0.91189 0.89860 0.89411 0.88249 0.88338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.80 37.16 0.36 -1.05 16 2 C -0.15 -2.01 5.01 -26.73 -0.13 -2.14 16 3 C 0.15 2.21 1.87 -69.08 -0.13 2.08 16 4 H 0.11 1.37 7.33 -51.93 -0.38 0.99 16 5 C 0.50 10.48 6.78 -10.99 -0.07 10.40 16 6 O -0.53 -13.54 14.25 -8.60 -0.12 -13.66 16 7 N -0.59 -12.38 2.75 -175.26 -0.48 -12.86 16 8 C 0.08 1.28 7.80 59.85 0.47 1.75 16 9 C 0.23 5.78 2.23 -69.08 -0.15 5.62 16 10 H 0.06 1.72 5.95 -51.93 -0.31 1.41 16 11 C -0.16 -3.61 8.68 37.16 0.32 -3.29 16 12 C -0.53 -14.68 8.57 -34.44 -0.30 -14.98 16 13 H 0.08 2.32 7.58 -52.49 -0.40 1.92 16 14 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 15 N -0.90 -27.09 13.96 55.43 0.77 -26.31 16 16 Si 0.88 22.46 24.37 -169.99 -4.14 18.32 16 17 H -0.28 -6.73 6.87 56.52 0.39 -6.34 16 18 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 19 H -0.26 -6.76 6.53 56.52 0.37 -6.39 16 20 N -0.60 -8.62 2.07 -166.15 -0.34 -8.97 16 21 C 0.10 1.01 7.30 -3.12 -0.02 0.99 16 22 C -0.13 -1.09 7.18 -25.10 -0.18 -1.27 16 23 C -0.15 -1.67 6.86 -26.74 -0.18 -1.85 16 24 C 0.53 8.53 6.68 -10.85 -0.07 8.46 16 25 O -0.52 -10.82 15.36 -8.59 -0.13 -10.95 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.52 7.75 -51.93 -0.40 0.12 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.09 1.15 4.45 -51.93 -0.23 0.92 16 30 H 0.08 1.35 6.60 -51.93 -0.34 1.00 16 31 H 0.05 0.68 6.86 -51.93 -0.36 0.33 16 32 H 0.06 0.73 6.06 -51.93 -0.31 0.42 16 33 H 0.09 1.53 7.02 -51.93 -0.36 1.17 16 34 H 0.05 1.16 3.28 -51.93 -0.17 0.99 16 35 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 1.15 7.67 -51.93 -0.40 0.75 16 37 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 329.61 15.07 4.97 4.97 Total: -1.00 -36.62 329.61 -6.33 -42.95 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -6.65 Total: -0.29 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -0.19 Total: 6.81 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: -0.05 Total: -48.14 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.25 Total: -24.61 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.14 Total: 18.32 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -36.62 -6.33 -42.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338414990.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.608 kcal (2) G-P(sol) polarization free energy of solvation -36.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds