Wall clock time and date at job start Tue Mar 31 2020 06:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47323 * 2 1 4 4 N 1.46506 * 109.46961 * 179.97438 * 3 2 1 5 5 C 1.46499 * 119.99987 * 269.99777 * 4 3 2 6 6 C 1.34772 * 119.99769 * 90.00569 * 4 3 2 7 7 O 1.21345 * 120.00459 * 4.99502 * 6 4 3 8 8 C 1.49456 * 119.99637 * 184.99888 * 6 4 3 9 9 O 1.21344 * 119.99944 * 275.15644 * 8 6 4 10 10 N 1.34786 * 119.99709 * 95.15903 * 8 6 4 11 11 C 1.46924 * 120.63213 * 354.95014 * 10 8 6 12 12 C 1.53192 * 108.77128 * 126.39078 * 11 10 8 13 13 C 1.53037 * 109.31107 * 54.63790 * 12 11 10 14 14 C 1.53034 * 109.53795 * 298.62966 * 13 12 11 15 15 H 1.08998 * 109.49810 * 301.41109 * 14 13 12 16 16 C 1.50707 * 109.52454 * 181.33585 * 14 13 12 17 17 H 1.07999 * 119.99749 * 0.14611 * 16 14 13 18 18 C 1.37873 * 120.00009 * 180.14955 * 16 14 13 19 19 N 1.31516 * 119.99876 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 119.99991 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47037 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47274 * 119.99811 * 20 18 16 23 23 H 1.48496 * 109.47366 * 239.99777 * 20 18 16 24 24 C 1.46928 * 120.62490 * 174.95181 * 10 8 6 25 25 H 1.08997 * 109.47264 * 300.00233 * 1 2 3 26 26 H 1.09002 * 109.47336 * 59.99886 * 1 2 3 27 27 H 1.09000 * 109.47389 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47211 * 239.99799 * 2 1 3 29 29 H 1.09002 * 109.47336 * 120.00114 * 2 1 3 30 30 H 1.08996 * 109.47377 * 60.00186 * 3 2 1 31 31 H 1.08997 * 109.47313 * 299.99949 * 3 2 1 32 32 H 1.09006 * 109.47093 * 264.81487 * 5 4 3 33 33 H 1.09002 * 109.47017 * 24.80660 * 5 4 3 34 34 H 1.08992 * 109.47231 * 144.80947 * 5 4 3 35 35 H 1.09002 * 109.58584 * 6.60657 * 11 10 8 36 36 H 1.08991 * 109.58700 * 246.18076 * 11 10 8 37 37 H 1.08996 * 109.50162 * 294.67842 * 12 11 10 38 38 H 1.09007 * 109.49398 * 174.58801 * 12 11 10 39 39 H 1.09004 * 109.45853 * 178.60771 * 13 12 11 40 40 H 1.08997 * 109.44920 * 58.64889 * 13 12 11 41 41 H 0.96999 * 119.99703 * 180.02562 * 19 18 16 42 42 H 1.09004 * 109.58314 * 113.82135 * 24 10 8 43 43 H 1.08993 * 109.58844 * 353.39707 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4423 0.0006 5 6 4.2370 1.4425 1.2696 6 6 4.1794 1.4422 -1.1663 7 8 3.5766 1.5337 -2.2154 8 6 5.6696 1.3294 -1.1681 9 8 6.3535 2.3221 -1.0289 10 7 6.2540 0.1249 -1.3244 11 6 5.4429 -1.0987 -1.3835 12 6 5.8034 -1.8681 -2.6582 13 6 7.3136 -2.1129 -2.6915 14 6 8.0493 -0.7712 -2.7129 15 1 7.7350 -0.1978 -3.5850 16 6 9.5355 -1.0126 -2.7788 17 1 9.9178 -2.0223 -2.8054 18 6 10.4069 0.0555 -2.8050 19 7 9.9412 1.2850 -2.7731 20 14 12.2490 -0.2438 -2.8860 21 1 12.5124 -1.7050 -2.9111 22 1 12.7982 0.3799 -4.1167 23 1 12.9008 0.3558 -1.6941 24 6 7.7144 0.0107 -1.4389 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 4.4991 2.4661 1.5378 33 1 3.6104 1.0116 2.0505 34 1 5.1459 0.8503 1.1649 35 1 4.3853 -0.8355 -1.4023 36 1 5.6519 -1.7181 -0.5114 37 1 5.5100 -1.2844 -3.5307 38 1 5.2795 -2.8240 -2.6666 39 1 7.5696 -2.6818 -3.5854 40 1 7.6097 -2.6754 -1.8061 41 1 10.5543 2.0364 -2.7919 42 1 8.1086 -0.5183 -0.5712 43 1 8.1555 1.0058 -1.4942 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350180142.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:45 Heat of formation + Delta-G solvation = -78.389697 kcal Electronic energy + Delta-G solvation = -23525.274994 eV Core-core repulsion = 20184.208552 eV Total energy + Delta-G solvation = -3341.066442 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.55727 -38.54531 -36.77040 -36.16832 -33.51304 -33.33838 -31.84677 -29.89978 -27.74567 -26.88526 -25.19430 -24.93827 -22.72647 -21.88292 -21.30943 -19.48498 -18.34313 -17.55297 -16.74961 -16.22892 -16.07213 -15.21316 -14.93547 -14.69064 -14.47159 -14.09181 -13.76453 -13.50602 -13.32190 -13.02649 -12.78481 -12.67204 -12.64963 -12.31064 -12.12435 -12.00159 -11.97984 -11.55355 -11.05292 -11.00724 -10.94961 -10.88850 -10.51939 -10.41523 -10.27462 -9.96886 -9.25695 -9.18049 -8.89202 -8.80269 -8.47598 -7.92690 -6.02765 -4.11754 2.36752 2.54892 3.01606 3.29172 3.37518 3.40371 3.72209 4.40288 4.49038 4.75741 4.76952 4.92932 5.09634 5.21946 5.23224 5.27924 5.33470 5.43802 5.46174 5.59103 5.60619 5.64217 5.79200 5.90423 5.91593 6.01921 6.13930 6.27018 6.35115 6.53808 6.61066 6.78843 6.92208 7.01388 7.09662 7.11233 7.55924 7.80950 7.90281 7.95178 8.05882 8.31384 8.50915 8.92726 9.54297 11.02837 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029237 B = 0.004479 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.466607 B = 6249.564586 C = 6753.709402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.141 4.141 3 C 0.112 3.888 4 N -0.609 5.609 5 C 0.077 3.923 6 C 0.518 3.482 7 O -0.515 6.515 8 C 0.507 3.493 9 O -0.512 6.512 10 N -0.586 5.586 11 C 0.109 3.891 12 C -0.134 4.134 13 C -0.110 4.110 14 C 0.038 3.962 15 H 0.031 0.969 16 C -0.520 4.520 17 H 0.060 0.940 18 C 0.062 3.938 19 N -0.881 5.881 20 Si 0.894 3.106 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.283 1.283 24 C 0.111 3.889 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.264 0.736 42 H 0.049 0.951 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.826 -4.065 9.321 18.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.180 4.180 3 C -0.010 4.010 4 N -0.345 5.345 5 C -0.066 4.066 6 C 0.301 3.699 7 O -0.388 6.388 8 C 0.288 3.712 9 O -0.387 6.387 10 N -0.320 5.320 11 C -0.014 4.014 12 C -0.172 4.172 13 C -0.148 4.148 14 C 0.018 3.982 15 H 0.049 0.951 16 C -0.558 4.558 17 H 0.078 0.922 18 C -0.141 4.141 19 N -0.518 5.518 20 Si 0.721 3.279 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.008 4.008 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -15.686 -3.277 8.825 18.294 hybrid contribution 0.962 -0.116 -0.001 0.968 sum -14.724 -3.393 8.824 17.498 Atomic orbital electron populations 1.21679 0.94979 1.01985 1.01944 1.21906 0.96278 0.97025 1.02742 1.21600 0.78571 0.97288 1.03562 1.47921 1.06860 1.73444 1.06241 1.21865 0.97186 1.02798 0.84754 1.20792 0.88957 0.76129 0.84018 1.90754 1.68830 1.48201 1.31064 1.19988 0.87462 0.84877 0.78921 1.90813 1.62997 1.35882 1.49054 1.48599 1.10133 1.04371 1.68898 1.21693 0.94050 0.86648 0.99058 1.21946 0.98976 0.99065 0.97239 1.21628 0.92139 1.00226 1.00774 1.19006 0.94942 0.90501 0.93706 0.95076 1.21101 0.90226 0.92862 1.51648 0.92163 1.25068 0.99053 0.95187 0.94772 1.69888 1.34707 0.97960 1.49293 0.86511 0.85401 0.78277 0.77676 1.19765 1.20986 1.20958 1.22465 0.73224 1.06179 0.98924 0.92669 0.92407 0.92399 0.91413 0.91690 0.90278 0.89565 0.91784 0.90393 0.90901 0.91643 0.91344 0.91776 0.91979 0.92748 0.93052 0.92611 0.93229 0.85788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.70 16 2 C -0.14 -1.27 6.26 -26.74 -0.17 -1.44 16 3 C 0.11 1.17 5.42 -4.04 -0.02 1.14 16 4 N -0.61 -8.13 2.87 -182.09 -0.52 -8.66 16 5 C 0.08 0.83 10.23 59.85 0.61 1.44 16 6 C 0.52 9.38 5.45 -11.58 -0.06 9.32 16 7 O -0.51 -10.57 16.65 5.50 0.09 -10.48 16 8 C 0.51 10.69 5.69 -11.58 -0.07 10.62 16 9 O -0.51 -12.69 16.53 5.50 0.09 -12.60 16 10 N -0.59 -11.89 2.97 -173.28 -0.52 -12.40 16 11 C 0.11 1.76 6.36 -3.71 -0.02 1.74 16 12 C -0.13 -2.24 6.08 -26.61 -0.16 -2.41 16 13 C -0.11 -2.17 5.11 -26.69 -0.14 -2.30 16 14 C 0.04 0.92 2.25 -91.65 -0.21 0.72 16 15 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 16 C -0.52 -13.89 8.57 -34.44 -0.29 -14.18 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 18 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 19 N -0.88 -25.54 11.39 55.43 0.63 -24.91 16 20 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 C 0.11 2.65 5.39 -3.71 -0.02 2.63 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.62 8.07 -51.93 -0.42 0.20 16 31 H 0.09 1.03 7.36 -51.93 -0.38 0.65 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.57 8.03 -51.93 -0.42 0.15 16 34 H 0.07 0.89 6.99 -51.93 -0.36 0.53 16 35 H 0.07 0.98 6.31 -51.93 -0.33 0.65 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.06 0.85 8.14 -51.92 -0.42 0.42 16 39 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.12 3.46 5.15 -51.93 -0.27 3.19 16 LS Contribution 347.11 15.07 5.23 5.23 Total: -1.00 -32.40 347.11 -7.50 -39.90 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -7.21 Total: -0.28 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: -0.28 Total: 8.19 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: -0.41 Total: -45.97 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: 0.18 Total: -23.08 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.40 -7.50 -39.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350180142.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.489 kcal (2) G-P(sol) polarization free energy of solvation -32.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds