Wall clock time and date at job start Tue Mar 31 2020 06:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.46894 * 2 1 4 4 N 1.46499 * 109.46833 * 179.97438 * 3 2 1 5 5 C 1.46497 * 120.00164 * 269.99432 * 4 3 2 6 6 C 1.34784 * 119.99944 * 89.99704 * 4 3 2 7 7 O 1.21347 * 120.00360 * 5.00738 * 6 4 3 8 8 C 1.49452 * 119.99973 * 185.00438 * 6 4 3 9 9 O 1.21351 * 119.99857 * 275.42021 * 8 6 4 10 10 N 1.34773 * 119.99931 * 95.13558 * 8 6 4 11 11 C 1.46923 * 120.63321 * 355.22523 * 10 8 6 12 12 C 1.53188 * 108.77654 * 233.58242 * 11 10 8 13 13 C 1.53039 * 109.31423 * 305.36326 * 12 11 10 14 14 C 1.53045 * 109.53908 * 61.36339 * 13 12 11 15 15 H 1.09001 * 109.49638 * 58.58545 * 14 13 12 16 16 C 1.50696 * 109.49874 * 178.68470 * 14 13 12 17 17 H 1.07999 * 119.99719 * 0.02562 * 16 14 13 18 18 C 1.37875 * 120.00118 * 179.97438 * 16 14 13 19 19 N 1.31514 * 119.99877 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 120.00252 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47224 * 59.99915 * 20 18 16 22 22 H 1.48494 * 109.47039 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.46916 * 300.00118 * 20 18 16 24 24 C 1.46925 * 120.63022 * 174.94105 * 10 8 6 25 25 H 1.09003 * 109.47285 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47591 * 300.00693 * 1 2 3 27 27 H 1.09003 * 109.47114 * 60.00553 * 1 2 3 28 28 H 1.08997 * 109.47591 * 239.99307 * 2 1 3 29 29 H 1.09003 * 109.47114 * 119.99447 * 2 1 3 30 30 H 1.08991 * 109.47542 * 59.99712 * 3 2 1 31 31 H 1.08998 * 109.47239 * 299.99060 * 3 2 1 32 32 H 1.08995 * 109.47435 * 264.81196 * 5 4 3 33 33 H 1.09003 * 109.47207 * 24.81598 * 5 4 3 34 34 H 1.08999 * 109.47324 * 144.81445 * 5 4 3 35 35 H 1.09001 * 109.58606 * 353.36959 * 11 10 8 36 36 H 1.09001 * 109.58641 * 113.64946 * 11 10 8 37 37 H 1.09003 * 109.49757 * 65.31571 * 12 11 10 38 38 H 1.09002 * 109.50153 * 185.41105 * 12 11 10 39 39 H 1.09003 * 109.46248 * 181.38733 * 13 12 11 40 40 H 1.09002 * 109.45826 * 301.35931 * 13 12 11 41 41 H 0.96998 * 119.99997 * 179.97438 * 19 18 16 42 42 H 1.09004 * 109.58820 * 246.20476 * 24 10 8 43 43 H 1.09003 * 109.58954 * 6.62948 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.2369 1.4428 1.2696 6 6 4.1793 1.4422 -1.1664 7 8 3.5765 1.5338 -2.2156 8 6 5.6695 1.3293 -1.1682 9 8 6.3534 2.3214 -1.0243 10 7 6.2539 0.1249 -1.3239 11 6 5.4423 -1.0982 -1.3884 12 6 5.9627 -2.0908 -0.3441 13 6 7.4602 -2.3179 -0.5637 14 6 8.2096 -0.9951 -0.3883 15 1 8.0243 -0.6017 0.6113 16 6 9.6873 -1.2258 -0.5728 17 1 10.0556 -2.2168 -0.7936 18 6 10.5689 -0.1717 -0.4609 19 7 10.1203 1.0350 -0.1925 20 14 12.4006 -0.4576 -0.6903 21 1 12.6514 -0.9917 -2.0531 22 1 13.1271 0.8262 -0.5199 23 1 12.8795 -1.4347 0.3202 24 6 7.7142 0.0105 -1.4387 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9563 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 4.4989 2.4662 1.5377 33 1 3.6104 1.0117 2.0505 34 1 5.1459 0.8506 1.1649 35 1 4.4007 -0.8572 -1.1761 36 1 5.5205 -1.5366 -2.3832 37 1 5.7986 -1.6872 0.6551 38 1 5.4324 -3.0377 -0.4461 39 1 7.8280 -3.0427 0.1626 40 1 7.6258 -2.6980 -1.5718 41 1 10.7406 1.7766 -0.1133 42 1 7.9759 -0.3407 -2.4368 43 1 8.1721 0.9834 -1.2597 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350180198.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:48 Heat of formation + Delta-G solvation = -78.760334 kcal Electronic energy + Delta-G solvation = -23651.235301 eV Core-core repulsion = 20310.152787 eV Total energy + Delta-G solvation = -3341.082514 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.55219 -38.53795 -36.77155 -36.14662 -33.49698 -33.33088 -31.87578 -29.91190 -27.70532 -26.84348 -25.19403 -24.93921 -22.71039 -21.91363 -21.27252 -19.48717 -18.46285 -17.37205 -16.80592 -16.23702 -16.05857 -15.20303 -14.96579 -14.57557 -14.52010 -14.05373 -13.78086 -13.54667 -13.24621 -12.97269 -12.84048 -12.68989 -12.58757 -12.27753 -12.19447 -12.00852 -11.89937 -11.52995 -11.06565 -11.03206 -10.93454 -10.87128 -10.57803 -10.45167 -10.30367 -9.97493 -9.27338 -9.19479 -8.91447 -8.76920 -8.49331 -7.92548 -6.04635 -4.13561 2.36790 2.53522 3.08738 3.29938 3.36362 3.37325 3.70676 4.39178 4.50370 4.78199 4.79071 4.99065 5.15053 5.20098 5.24634 5.26039 5.39911 5.43320 5.48430 5.58922 5.62591 5.77004 5.81018 5.91492 5.92499 6.03924 6.08636 6.22979 6.37968 6.50359 6.56659 6.75824 6.88387 6.99820 7.10468 7.13361 7.52550 7.76865 7.88194 7.95266 8.04431 8.29863 8.51035 8.89999 9.52523 11.00802 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028265 B = 0.004618 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.403598 B = 6061.899577 C = 6481.221878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.141 4.141 3 C 0.112 3.888 4 N -0.606 5.606 5 C 0.075 3.925 6 C 0.518 3.482 7 O -0.521 6.521 8 C 0.505 3.495 9 O -0.510 6.510 10 N -0.586 5.586 11 C 0.108 3.892 12 C -0.130 4.130 13 C -0.112 4.112 14 C 0.043 3.957 15 H 0.031 0.969 16 C -0.523 4.523 17 H 0.059 0.941 18 C 0.064 3.936 19 N -0.880 5.880 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.110 3.890 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.265 0.735 42 H 0.048 0.952 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.191 -3.448 3.277 16.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.180 4.180 3 C -0.010 4.010 4 N -0.341 5.341 5 C -0.068 4.068 6 C 0.302 3.698 7 O -0.396 6.396 8 C 0.286 3.714 9 O -0.385 6.385 10 N -0.320 5.320 11 C -0.015 4.015 12 C -0.169 4.169 13 C -0.150 4.150 14 C 0.024 3.976 15 H 0.049 0.951 16 C -0.561 4.561 17 H 0.077 0.923 18 C -0.139 4.139 19 N -0.518 5.518 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.203 1.203 24 C -0.010 4.010 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -16.049 -2.651 2.814 16.508 hybrid contribution 0.968 -0.139 -0.087 0.982 sum -15.081 -2.790 2.727 15.577 Atomic orbital electron populations 1.21679 0.94998 1.01968 1.01918 1.21905 0.96242 0.97022 1.02785 1.21602 0.78609 0.97294 1.03534 1.47919 1.06844 1.73012 1.06349 1.21913 0.97358 1.03005 0.84527 1.20792 0.88951 0.76062 0.84023 1.90736 1.68967 1.48786 1.31104 1.20002 0.87479 0.84962 0.78959 1.90828 1.62943 1.36023 1.48720 1.48577 1.10053 1.04266 1.69129 1.21695 0.93677 0.86096 1.00060 1.21932 0.98737 0.97696 0.98493 1.21651 0.92230 1.00375 1.00699 1.19036 0.94236 0.89360 0.95009 0.95105 1.21027 0.90546 0.94769 1.49783 0.92296 1.25050 0.98983 0.95225 0.94683 1.69863 1.34904 0.99607 1.47386 0.86635 0.85129 0.77417 0.78707 1.20214 1.21236 1.20265 1.22575 0.73133 1.06157 0.99109 0.92406 0.92643 0.92466 0.91475 0.91586 0.90239 0.89624 0.91703 0.90384 0.90472 0.91685 0.91387 0.92075 0.91908 0.92731 0.92988 0.92500 0.93335 0.85764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 37.16 0.37 -0.72 16 2 C -0.14 -1.31 6.26 -26.73 -0.17 -1.48 16 3 C 0.11 1.20 5.42 -4.04 -0.02 1.18 16 4 N -0.61 -8.42 2.87 -182.09 -0.52 -8.94 16 5 C 0.07 0.92 10.23 59.85 0.61 1.53 16 6 C 0.52 9.37 5.47 -11.58 -0.06 9.31 16 7 O -0.52 -10.41 16.65 5.50 0.09 -10.32 16 8 C 0.51 10.65 5.69 -11.59 -0.07 10.59 16 9 O -0.51 -12.68 16.52 5.50 0.09 -12.59 16 10 N -0.59 -11.89 2.97 -173.01 -0.51 -12.40 16 11 C 0.11 1.75 6.32 -3.71 -0.02 1.73 16 12 C -0.13 -2.00 6.08 -26.61 -0.16 -2.16 16 13 C -0.11 -2.11 5.10 -26.69 -0.14 -2.25 16 14 C 0.04 1.01 2.26 -91.43 -0.21 0.80 16 15 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 16 C -0.52 -13.70 8.56 -34.44 -0.29 -14.00 16 17 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 19 N -0.88 -24.97 11.41 55.43 0.63 -24.33 16 20 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 C 0.11 2.60 5.44 -3.49 -0.02 2.58 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.66 8.07 -51.93 -0.42 0.24 16 31 H 0.09 1.03 7.36 -51.93 -0.38 0.65 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.68 8.03 -51.93 -0.42 0.26 16 34 H 0.08 1.12 6.99 -51.93 -0.36 0.75 16 35 H 0.06 0.96 6.37 -51.93 -0.33 0.63 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.12 3.44 5.14 -51.93 -0.27 3.17 16 LS Contribution 347.18 15.07 5.23 5.23 Total: -1.00 -31.34 347.18 -7.50 -38.84 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -7.22 Total: -0.03 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: -0.27 Total: 8.73 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: -0.40 Total: -45.68 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: 0.18 Total: -22.91 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.34 -7.50 -38.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350180198.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.916 kcal (2) G-P(sol) polarization free energy of solvation -31.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds