Wall clock time and date at job start Tue Mar 31 2020 05:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.45754 * 117.94397 * 2 1 4 4 C 1.52935 * 110.47541 * 199.09294 * 3 2 1 5 5 C 1.53342 * 108.66434 * 309.21617 * 4 3 2 6 6 H 1.08994 * 109.70609 * 307.79647 * 5 4 3 7 7 C 1.50694 * 109.67309 * 187.27995 * 5 4 3 8 8 O 1.21283 * 120.00367 * 1.03066 * 7 5 4 9 9 N 1.34784 * 119.99992 * 181.03984 * 7 5 4 10 10 C 1.46499 * 119.99897 * 180.02562 * 9 7 5 11 11 C 1.53001 * 109.47073 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46989 * 59.99821 * 11 10 9 13 13 C 1.53000 * 109.47124 * 300.00146 * 11 10 9 14 14 C 1.50694 * 109.47168 * 179.97438 * 11 10 9 15 15 H 1.08000 * 120.00563 * 0.02562 * 14 11 10 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 C 1.53077 * 108.42285 * 67.54725 * 5 4 3 23 23 C 1.33353 * 117.94523 * 179.97438 * 2 1 3 24 24 O 1.21283 * 118.25000 * 357.74590 * 23 2 1 25 25 H 1.09003 * 109.46918 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46961 * 300.01708 * 1 2 3 27 27 H 1.08992 * 109.47443 * 60.01813 * 1 2 3 28 28 H 1.08999 * 109.29942 * 319.38698 * 3 2 1 29 29 H 1.08997 * 109.30015 * 78.97090 * 3 2 1 30 30 H 1.09001 * 109.59339 * 189.47292 * 4 3 2 31 31 H 1.09003 * 109.61893 * 68.98209 * 4 3 2 32 32 H 0.96991 * 119.99637 * 359.97438 * 9 7 5 33 33 H 1.09002 * 109.47239 * 59.99631 * 10 9 7 34 34 H 1.08998 * 109.47134 * 299.99061 * 10 9 7 35 35 H 1.08997 * 109.47359 * 180.02562 * 12 11 10 36 36 H 1.09007 * 109.47356 * 300.00069 * 12 11 10 37 37 H 1.09000 * 109.47156 * 59.99794 * 12 11 10 38 38 H 1.09002 * 109.47106 * 299.99750 * 13 11 10 39 39 H 1.08998 * 109.47089 * 59.99697 * 13 11 10 40 40 H 1.08995 * 109.47131 * 179.97438 * 13 11 10 41 41 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 42 42 H 1.09001 * 109.39851 * 71.22830 * 22 5 4 43 43 H 1.08998 * 109.39864 * 190.97215 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2876 0.0000 4 6 3.5948 1.1257 -0.4686 5 6 4.2493 -0.0012 0.3395 6 1 4.1094 0.1815 1.4049 7 6 5.7216 -0.0624 0.0244 8 8 6.2086 0.7295 -0.7546 9 7 6.4975 -0.9972 0.6082 10 6 7.9289 -1.0564 0.3023 11 6 8.5724 -2.1982 1.0916 12 6 7.9125 -3.5225 0.7023 13 6 8.3807 -1.9540 2.5898 14 6 10.0447 -2.2595 0.7765 15 1 10.4784 -1.5542 0.0829 16 6 10.8384 -3.2159 1.3736 17 7 10.3104 -4.0744 2.2186 18 14 12.6633 -3.2922 0.9824 19 1 13.2879 -4.4005 1.7487 20 1 12.8484 -3.5294 -0.4717 21 1 13.3047 -2.0072 1.3599 22 6 3.5838 -1.3240 -0.0483 23 6 2.0900 -1.1780 0.0005 24 8 1.4159 -2.1854 0.0430 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5141 0.8898 27 1 -0.3634 0.5135 -0.8901 28 1 1.6270 1.9718 -0.6697 29 1 2.1430 1.6981 1.0097 30 1 4.1383 2.0563 -0.3051 31 1 3.6100 0.8721 -1.5287 32 1 6.1081 -1.6303 1.2314 33 1 8.3991 -0.1130 0.5800 34 1 8.0655 -1.2301 -0.7650 35 1 8.3705 -4.3360 1.2649 36 1 6.8473 -3.4785 0.9299 37 1 8.0490 -3.6965 -0.3650 38 1 8.8508 -1.0105 2.8672 39 1 7.3156 -1.9099 2.8174 40 1 8.8386 -2.7677 3.1521 41 1 10.8687 -4.7474 2.6384 42 1 3.8880 -1.6000 -1.0579 43 1 3.8943 -2.1032 0.6478 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535410620.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:41 Heat of formation + Delta-G solvation = -84.675600 kcal Electronic energy + Delta-G solvation = -22901.822755 eV Core-core repulsion = 19560.483736 eV Total energy + Delta-G solvation = -3341.339019 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.86591 -39.29450 -36.75583 -36.18756 -34.22469 -33.29241 -30.93420 -29.85979 -27.71640 -25.75406 -25.72100 -25.15227 -24.54466 -22.72531 -20.06432 -18.91366 -18.80257 -17.35783 -16.76432 -16.48306 -15.96562 -15.66630 -15.15430 -15.00947 -14.60141 -14.40882 -13.94346 -13.54539 -13.39923 -13.00796 -12.89592 -12.62574 -12.48344 -12.22816 -11.97495 -11.83512 -11.40328 -11.25243 -11.18077 -11.14915 -10.86408 -10.74646 -10.41005 -10.25985 -10.14825 -9.66112 -9.52648 -9.22046 -8.99051 -8.81789 -8.49946 -8.35121 -6.03730 -4.14178 2.44735 2.76359 2.91121 3.28921 3.33540 3.36350 3.57746 4.30035 4.38305 4.39820 4.57193 4.60094 5.00080 5.02833 5.08809 5.16236 5.22960 5.25656 5.35136 5.51801 5.57364 5.65221 5.77068 5.96845 6.11216 6.19422 6.28765 6.47821 6.73170 6.79879 6.89620 6.97406 6.98995 7.18195 7.32610 7.53453 7.67433 7.94725 7.97592 7.98874 8.12224 8.35982 8.59929 8.86253 9.51808 10.97581 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035282 B = 0.003517 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.424235 B = 7958.905415 C = 8422.131226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.609 5.609 3 C 0.114 3.886 4 C -0.115 4.115 5 C -0.113 4.113 6 H 0.103 0.897 7 C 0.510 3.490 8 O -0.549 6.549 9 N -0.714 5.714 10 C 0.131 3.869 11 C 0.056 3.944 12 C -0.131 4.131 13 C -0.131 4.131 14 C -0.508 4.508 15 H 0.057 0.943 16 C 0.067 3.933 17 N -0.885 5.885 18 Si 0.894 3.106 19 H -0.288 1.288 20 H -0.277 1.277 21 H -0.277 1.277 22 C -0.126 4.126 23 C 0.522 3.478 24 O -0.553 6.553 25 H 0.091 0.909 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.079 0.921 32 H 0.398 0.602 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.086 0.914 36 H 0.006 0.994 37 H 0.027 0.973 38 H 0.026 0.974 39 H 0.006 0.994 40 H 0.086 0.914 41 H 0.261 0.739 42 H 0.107 0.893 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.478 8.801 -1.594 18.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.343 5.343 3 C -0.009 4.009 4 C -0.153 4.153 5 C -0.135 4.135 6 H 0.121 0.879 7 C 0.295 3.705 8 O -0.427 6.427 9 N -0.364 5.364 10 C 0.009 3.991 11 C 0.055 3.945 12 C -0.189 4.189 13 C -0.189 4.189 14 C -0.547 4.547 15 H 0.075 0.925 16 C -0.135 4.135 17 N -0.524 5.524 18 Si 0.722 3.278 19 H -0.213 1.213 20 H -0.203 1.203 21 H -0.203 1.203 22 C -0.166 4.166 23 C 0.311 3.689 24 O -0.432 6.432 25 H 0.110 0.890 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.115 0.885 31 H 0.098 0.902 32 H 0.234 0.766 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.104 0.896 36 H 0.025 0.975 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.025 0.975 40 H 0.104 0.896 41 H 0.071 0.929 42 H 0.125 0.875 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -16.364 8.671 -2.006 18.628 hybrid contribution 0.884 -0.260 0.149 0.933 sum -15.481 8.411 -1.857 17.715 Atomic orbital electron populations 1.21768 0.79668 1.04702 1.01230 1.47238 1.07529 1.06245 1.73281 1.21484 0.93179 0.84330 1.01909 1.21717 0.93251 0.99708 1.00658 1.21469 0.93268 0.96148 1.02581 0.87901 1.20257 0.87797 0.81330 0.81147 1.90678 1.75255 1.41005 1.35786 1.46354 1.10987 1.33247 1.45788 1.21744 0.77080 1.00516 0.99803 1.18351 0.94762 0.89689 0.91650 1.21835 0.95416 1.01872 0.99756 1.21833 0.96052 1.01604 0.99368 1.20944 0.91957 1.15614 1.26167 0.92497 1.24879 0.98472 0.95314 0.94794 1.69792 1.35362 1.18283 1.28945 0.86631 0.85167 0.77581 0.78464 1.21319 1.20270 1.20291 1.21663 0.90737 0.98246 1.05905 1.20058 0.90690 0.82767 0.75385 1.90710 1.66142 1.35792 1.50512 0.89024 0.92214 0.92233 0.90192 0.91359 0.88496 0.90224 0.76639 0.92656 0.92637 0.89581 0.97485 0.95414 0.95449 0.97527 0.89577 0.92913 0.87483 0.87325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.56 10.48 59.85 0.63 1.18 16 2 N -0.61 -5.93 3.21 -182.85 -0.59 -6.52 16 3 C 0.11 0.83 6.40 -4.48 -0.03 0.81 16 4 C -0.12 -1.09 4.71 -26.59 -0.13 -1.21 16 5 C -0.11 -1.24 2.60 -91.56 -0.24 -1.48 16 6 H 0.10 0.98 8.13 -51.93 -0.42 0.56 16 7 C 0.51 7.87 7.14 -10.98 -0.08 7.80 16 8 O -0.55 -10.38 15.89 5.55 0.09 -10.29 16 9 N -0.71 -11.80 4.87 -60.29 -0.29 -12.10 16 10 C 0.13 2.67 4.50 -4.04 -0.02 2.65 16 11 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 12 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 13 C -0.13 -2.88 8.08 37.16 0.30 -2.58 16 14 C -0.51 -13.13 8.01 -34.44 -0.28 -13.40 16 15 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 16 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 17 N -0.89 -23.39 9.35 55.43 0.52 -22.87 16 18 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 19 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 C -0.13 -1.42 5.19 -28.10 -0.15 -1.57 16 23 C 0.52 6.49 7.47 -11.87 -0.09 6.40 16 24 O -0.55 -8.82 15.95 5.55 0.09 -8.74 16 25 H 0.09 0.91 6.59 -51.93 -0.34 0.57 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.45 8.10 -51.93 -0.42 0.02 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.10 0.92 7.89 -51.93 -0.41 0.51 16 31 H 0.08 0.82 8.12 -51.93 -0.42 0.40 16 32 H 0.40 6.00 5.85 -40.82 -0.24 5.76 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 36 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 40 H 0.09 2.11 6.07 -51.93 -0.32 1.80 16 41 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 42 H 0.11 1.25 8.09 -51.93 -0.42 0.83 16 43 H 0.11 1.20 7.92 -51.93 -0.41 0.79 16 LS Contribution 338.04 15.07 5.09 5.09 Total: -1.00 -30.41 338.04 -6.98 -37.40 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -6.93 Total: 3.66 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: 0.06 Total: -1.17 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: -0.36 Total: -41.48 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: 0.18 Total: -19.03 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.41 -6.98 -37.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535410620.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.278 kcal (2) G-P(sol) polarization free energy of solvation -30.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds