Wall clock time and date at job start Tue Mar 31 2020 05:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46969 * 2 1 4 4 C 1.50697 * 109.46783 * 240.00157 * 2 1 3 5 5 H 1.08006 * 119.99920 * 239.99903 * 4 2 1 6 6 C 1.37876 * 120.00428 * 60.00053 * 4 2 1 7 7 N 1.31520 * 119.99996 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46845 * 90.00227 * 8 6 4 10 10 H 1.48499 * 109.46907 * 209.99714 * 8 6 4 11 11 H 1.48495 * 109.46933 * 330.00015 * 8 6 4 12 12 C 1.52997 * 109.47143 * 119.99930 * 2 1 3 13 13 N 1.46497 * 109.46983 * 300.00028 * 12 2 1 14 14 C 1.34780 * 119.99566 * 180.02562 * 13 12 2 15 15 O 1.21280 * 120.00423 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99795 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47212 * 179.97438 * 16 14 13 18 18 H 1.09005 * 109.60179 * 54.67203 * 17 16 14 19 19 C 1.53339 * 109.60814 * 174.99889 * 17 16 14 20 20 C 1.53066 * 108.43195 * 187.28692 * 19 17 16 21 21 C 1.50177 * 109.89065 * 311.10067 * 20 19 17 22 22 O 1.21280 * 118.24890 * 197.55482 * 21 20 19 23 23 N 1.33357 * 123.50540 * 17.58364 * 21 20 19 24 24 C 1.45748 * 124.10693 * 357.77043 * 23 21 20 25 25 H 1.09004 * 109.46930 * 300.00004 * 1 2 3 26 26 H 1.09000 * 109.47312 * 60.00061 * 1 2 3 27 27 H 1.09002 * 109.47067 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46997 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47552 * 300.00092 * 3 2 1 30 30 H 1.08996 * 109.47452 * 59.99938 * 3 2 1 31 31 H 0.96993 * 120.00405 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46832 * 179.97438 * 12 2 1 33 33 H 1.09002 * 109.47153 * 60.00035 * 12 2 1 34 34 H 0.96995 * 120.00423 * 359.97438 * 13 12 2 35 35 H 1.09002 * 109.47060 * 299.99722 * 16 14 13 36 36 H 1.09001 * 109.47380 * 59.99809 * 16 14 13 37 37 H 1.09009 * 109.67092 * 307.02285 * 19 17 16 38 38 H 1.09005 * 109.67348 * 67.51413 * 19 17 16 39 39 H 1.09008 * 109.39950 * 71.22809 * 20 19 17 40 40 H 1.08994 * 109.40396 * 190.97168 * 20 19 17 41 41 H 0.96998 * 117.94318 * 177.78172 * 23 21 20 42 42 H 1.09007 * 109.30216 * 258.76615 * 24 23 21 43 43 H 1.09004 * 109.29736 * 139.39641 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6035 8 14 2.3224 -1.1196 -4.0080 9 1 1.3446 -2.1615 -4.4124 10 1 2.4871 -0.1402 -5.1121 11 1 3.6307 -1.7566 -3.7120 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0306 2.4453 14 6 1.8777 -0.4908 3.6695 15 8 2.5750 -1.4769 3.7808 16 6 1.3749 0.2193 4.8999 17 6 1.8850 -0.5019 6.1492 18 1 2.9709 -0.5860 6.1051 19 6 1.4805 0.2873 7.4001 20 6 2.1554 -0.3532 8.6156 21 6 1.9339 -1.8384 8.5994 22 8 2.1105 -2.4564 9.6279 23 7 1.5539 -2.5143 7.5143 24 6 1.2619 -1.8962 6.2271 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 0.7086 1.1613 -3.4844 32 1 3.1300 -0.7216 1.2489 33 1 1.6767 -1.7489 1.2492 34 1 0.9943 0.7582 2.3564 35 1 1.7375 1.2472 4.8999 36 1 0.2849 0.2185 4.9000 37 1 1.8070 1.3227 7.3023 38 1 0.3977 0.2538 7.5209 39 1 3.2252 -0.1463 8.5866 40 1 1.7314 0.0661 9.5279 41 1 1.4663 -3.4776 7.5864 42 1 0.1820 -1.8156 6.1028 43 1 1.6679 -2.5175 5.4288 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001556957504.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:21 Heat of formation + Delta-G solvation = -99.815788 kcal Electronic energy + Delta-G solvation = -22492.732332 eV Core-core repulsion = 19150.736785 eV Total energy + Delta-G solvation = -3341.995547 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.56303 -39.37041 -37.04579 -36.19852 -33.58140 -33.33088 -31.61116 -30.81136 -27.30657 -25.79317 -25.55815 -24.92801 -24.29050 -22.15292 -20.13103 -19.26559 -18.83637 -17.29324 -17.08612 -16.20825 -15.88702 -15.69544 -15.19799 -15.06962 -14.73018 -14.30598 -14.16901 -13.62735 -13.36151 -13.10054 -13.04692 -12.84561 -12.25671 -12.19000 -11.76332 -11.47078 -11.41365 -11.25512 -11.17146 -11.08034 -10.90628 -10.73969 -10.44847 -10.25467 -9.90780 -9.70120 -9.62407 -9.30986 -9.13793 -8.84623 -8.51791 -8.37646 -6.07398 -4.17685 2.51212 2.93620 3.17938 3.24603 3.31952 3.35388 3.60388 4.32460 4.36023 4.42244 4.50164 4.58571 4.96563 5.08134 5.18471 5.19566 5.30859 5.37337 5.43249 5.52081 5.55377 5.60823 5.89487 6.05978 6.16780 6.25808 6.44028 6.62610 6.70837 6.75176 6.85982 6.94950 6.95518 7.21072 7.28904 7.49274 7.64149 7.94976 7.96956 8.07397 8.08978 8.32703 8.60586 8.83168 9.48603 10.93988 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.043286 B = 0.002995 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.701664 B = 9347.296483 C = 9665.207154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.507 4.507 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.131 3.869 13 N -0.716 5.716 14 C 0.501 3.499 15 O -0.553 6.553 16 C -0.136 4.136 17 C -0.087 4.087 18 H 0.090 0.910 19 C -0.121 4.121 20 C -0.134 4.134 21 C 0.518 3.482 22 O -0.569 6.569 23 N -0.715 5.715 24 C 0.107 3.893 25 H 0.006 0.994 26 H 0.085 0.915 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.085 0.915 30 H 0.006 0.994 31 H 0.260 0.740 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.398 0.602 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.399 0.601 42 H 0.062 0.938 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.143 2.589 15.290 15.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.546 4.546 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 C 0.009 3.991 13 N -0.366 5.366 14 C 0.286 3.714 15 O -0.432 6.432 16 C -0.177 4.177 17 C -0.106 4.106 18 H 0.108 0.892 19 C -0.159 4.159 20 C -0.174 4.174 21 C 0.305 3.695 22 O -0.448 6.448 23 N -0.366 5.366 24 C -0.017 4.017 25 H 0.025 0.975 26 H 0.104 0.896 27 H 0.045 0.955 28 H 0.046 0.954 29 H 0.104 0.896 30 H 0.025 0.975 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.233 0.767 35 H 0.117 0.883 36 H 0.113 0.887 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.234 0.766 42 H 0.080 0.920 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.614 1.936 15.688 15.889 hybrid contribution -0.038 -0.371 -1.126 1.186 sum -1.651 1.565 14.562 14.739 Atomic orbital electron populations 1.21836 0.97771 0.99155 1.00096 1.18349 0.92770 0.92744 0.90605 1.21833 0.98591 0.98363 1.00096 1.20990 1.31548 1.12128 0.89925 0.92457 1.24879 0.94835 0.94895 0.98873 1.69796 1.36660 1.22722 1.23283 0.86575 0.79349 0.79403 0.82578 1.20695 1.21242 1.19889 1.21715 0.98141 0.95769 0.83507 1.46352 1.52376 1.31718 1.06146 1.20554 0.80853 0.84968 0.84993 1.90645 1.38794 1.26872 1.86904 1.21697 1.02769 1.00861 0.92336 1.21183 1.02178 0.93850 0.93376 0.89161 1.21771 1.01115 0.99938 0.93040 1.21621 1.03718 0.91389 1.00655 1.20214 0.75793 0.90774 0.82745 1.90746 1.52633 1.69727 1.31733 1.45489 1.68656 1.11394 1.11011 1.21682 0.99750 0.95302 0.84989 0.97506 0.89589 0.95466 0.95449 0.89594 0.97493 0.92971 0.92738 0.92735 0.76664 0.88339 0.88704 0.90153 0.90941 0.88155 0.88177 0.76618 0.92002 0.88171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 8.08 37.16 0.30 -2.49 16 2 C 0.06 1.23 0.50 -155.66 -0.08 1.15 16 3 C -0.13 -2.81 8.08 37.16 0.30 -2.51 16 4 C -0.51 -12.88 8.01 -34.44 -0.28 -13.16 16 5 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 6 C 0.07 1.70 5.15 -17.82 -0.09 1.61 16 7 N -0.89 -23.00 9.35 55.43 0.52 -22.48 16 8 Si 0.89 20.27 29.54 -169.99 -5.02 15.25 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 12 C 0.13 2.59 4.50 -4.04 -0.02 2.57 16 13 N -0.72 -11.14 4.96 -60.30 -0.30 -11.44 16 14 C 0.50 7.12 7.59 -10.98 -0.08 7.04 16 15 O -0.55 -9.74 14.06 5.56 0.08 -9.66 16 16 C -0.14 -1.23 5.17 -27.88 -0.14 -1.38 16 17 C -0.09 -0.79 1.89 -90.49 -0.17 -0.96 16 18 H 0.09 0.97 7.93 -51.93 -0.41 0.56 16 19 C -0.12 -0.83 5.32 -26.52 -0.14 -0.97 16 20 C -0.13 -1.11 6.03 -28.10 -0.17 -1.28 16 21 C 0.52 6.14 7.71 -11.87 -0.09 6.04 16 22 O -0.57 -9.02 17.78 5.56 0.10 -8.92 16 23 N -0.71 -7.53 5.45 -61.39 -0.33 -7.86 16 24 C 0.11 1.06 6.12 -4.49 -0.03 1.03 16 25 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 26 H 0.09 2.06 6.07 -51.93 -0.32 1.74 16 27 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.09 2.06 6.07 -51.93 -0.32 1.75 16 30 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 31 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 32 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.40 5.53 6.16 -40.82 -0.25 5.28 16 35 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.09 0.69 8.10 -51.93 -0.42 0.27 16 37 H 0.08 0.43 8.14 -51.92 -0.42 0.00 16 38 H 0.07 0.46 8.13 -51.93 -0.42 0.04 16 39 H 0.10 0.76 8.14 -51.92 -0.42 0.34 16 40 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.40 3.97 8.80 -40.82 -0.36 3.61 16 42 H 0.06 0.54 8.08 -51.92 -0.42 0.12 16 43 H 0.10 1.21 6.23 -51.93 -0.32 0.89 16 LS Contribution 337.12 15.07 5.08 5.08 Total: -1.00 -30.07 337.12 -7.45 -37.51 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -6.88 Total: 5.82 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -0.69 Total: -3.30 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: -0.11 Total: -41.78 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: 0.18 Total: -18.58 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.07 -7.45 -37.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556957504.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.303 kcal (2) G-P(sol) polarization free energy of solvation -30.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds