Wall clock time and date at job start Tue Mar 31 2020 05:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46969 * 2 1 4 4 C 1.50697 * 109.46783 * 240.00157 * 2 1 3 5 5 H 1.08006 * 119.99920 * 239.99903 * 4 2 1 6 6 C 1.37876 * 120.00428 * 60.00053 * 4 2 1 7 7 N 1.31520 * 119.99996 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46845 * 90.00227 * 8 6 4 10 10 H 1.48499 * 109.46907 * 209.99714 * 8 6 4 11 11 H 1.48495 * 109.46933 * 330.00015 * 8 6 4 12 12 C 1.52997 * 109.47143 * 119.99930 * 2 1 3 13 13 N 1.46497 * 109.46983 * 300.00028 * 12 2 1 14 14 C 1.34780 * 119.99566 * 180.02562 * 13 12 2 15 15 O 1.21280 * 120.00423 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99795 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47212 * 179.97438 * 16 14 13 18 18 H 1.09005 * 109.60179 * 54.67203 * 17 16 14 19 19 C 1.53339 * 109.60814 * 174.99889 * 17 16 14 20 20 C 1.53066 * 108.43195 * 187.28692 * 19 17 16 21 21 C 1.50177 * 109.89065 * 311.10067 * 20 19 17 22 22 O 1.21280 * 118.24890 * 197.55482 * 21 20 19 23 23 N 1.33357 * 123.50540 * 17.58364 * 21 20 19 24 24 C 1.45748 * 124.10693 * 357.77043 * 23 21 20 25 25 H 1.09004 * 109.46930 * 300.00004 * 1 2 3 26 26 H 1.09000 * 109.47312 * 60.00061 * 1 2 3 27 27 H 1.09002 * 109.47067 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46997 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47552 * 300.00092 * 3 2 1 30 30 H 1.08996 * 109.47452 * 59.99938 * 3 2 1 31 31 H 0.96993 * 120.00405 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46832 * 179.97438 * 12 2 1 33 33 H 1.09002 * 109.47153 * 60.00035 * 12 2 1 34 34 H 0.96995 * 120.00423 * 359.97438 * 13 12 2 35 35 H 1.09002 * 109.47060 * 299.99722 * 16 14 13 36 36 H 1.09001 * 109.47380 * 59.99809 * 16 14 13 37 37 H 1.09009 * 109.67092 * 307.02285 * 19 17 16 38 38 H 1.09005 * 109.67348 * 67.51413 * 19 17 16 39 39 H 1.09008 * 109.39950 * 71.22809 * 20 19 17 40 40 H 1.08994 * 109.40396 * 190.97168 * 20 19 17 41 41 H 0.96998 * 117.94318 * 177.78172 * 23 21 20 42 42 H 1.09007 * 109.30216 * 258.76615 * 24 23 21 43 43 H 1.09004 * 109.29736 * 139.39641 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6035 8 14 2.3224 -1.1196 -4.0080 9 1 1.3446 -2.1615 -4.4124 10 1 2.4871 -0.1402 -5.1121 11 1 3.6307 -1.7566 -3.7120 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0306 2.4453 14 6 1.8777 -0.4908 3.6695 15 8 2.5750 -1.4769 3.7808 16 6 1.3749 0.2193 4.8999 17 6 1.8850 -0.5019 6.1492 18 1 2.9709 -0.5860 6.1051 19 6 1.4805 0.2873 7.4001 20 6 2.1554 -0.3532 8.6156 21 6 1.9339 -1.8384 8.5994 22 8 2.1105 -2.4564 9.6279 23 7 1.5539 -2.5143 7.5143 24 6 1.2619 -1.8962 6.2271 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 0.7086 1.1613 -3.4844 32 1 3.1300 -0.7216 1.2489 33 1 1.6767 -1.7489 1.2492 34 1 0.9943 0.7582 2.3564 35 1 1.7375 1.2472 4.8999 36 1 0.2849 0.2185 4.9000 37 1 1.8070 1.3227 7.3023 38 1 0.3977 0.2538 7.5209 39 1 3.2252 -0.1463 8.5866 40 1 1.7314 0.0661 9.5279 41 1 1.4663 -3.4776 7.5864 42 1 0.1820 -1.8156 6.1028 43 1 1.6679 -2.5175 5.4288 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001556957504.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:21 Heat of formation + Delta-G solvation = -120.662610 kcal Electronic energy + Delta-G solvation = -22493.636318 eV Core-core repulsion = 19150.736785 eV Total energy + Delta-G solvation = -3342.899533 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.45756 -40.54002 -38.33513 -37.45895 -34.92502 -34.35772 -32.82224 -32.10705 -28.35875 -27.52414 -27.32844 -26.23165 -25.18705 -23.01682 -21.30974 -20.55813 -19.96995 -18.33929 -18.18250 -17.63276 -17.08460 -16.73657 -16.54765 -16.25275 -16.16120 -15.39273 -15.09814 -14.76982 -14.48074 -14.44770 -14.26598 -13.94308 -13.82238 -13.25314 -13.06191 -13.01342 -12.65185 -12.59913 -12.45678 -12.22870 -12.16600 -12.11453 -11.89328 -11.72456 -11.44723 -11.22298 -10.82221 -10.70958 -10.56829 -10.38365 -10.06740 -9.81250 -8.01849 -6.17222 1.41806 1.45452 1.52924 1.61787 1.83295 2.36210 2.39325 2.54910 3.21868 3.59805 3.73273 3.79831 3.87220 4.12400 4.42685 4.45181 4.53465 4.55607 4.60627 4.71997 4.76363 4.82076 4.86707 4.95891 5.03005 5.06729 5.10052 5.15193 5.21803 5.23746 5.40825 5.43564 5.68200 5.69120 5.70980 5.77729 6.19693 6.25685 6.36535 6.45894 6.80236 6.88064 7.18714 7.46670 7.50779 8.96607 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.043286 B = 0.002995 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.701664 B = 9347.296483 C = 9665.207154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.051 3.949 3 C -0.121 4.121 4 C -0.530 4.530 5 H 0.042 0.958 6 C 0.029 3.971 7 N -0.898 5.898 8 Si 0.941 3.059 9 H -0.280 1.280 10 H -0.283 1.283 11 H -0.277 1.277 12 C 0.149 3.851 13 N -0.713 5.713 14 C 0.497 3.503 15 O -0.591 6.591 16 C -0.123 4.123 17 C -0.086 4.086 18 H 0.070 0.930 19 C -0.109 4.109 20 C -0.131 4.131 21 C 0.510 3.490 22 O -0.618 6.618 23 N -0.712 5.712 24 C 0.107 3.893 25 H 0.042 0.958 26 H 0.060 0.940 27 H 0.016 0.984 28 H 0.016 0.984 29 H 0.060 0.940 30 H 0.042 0.958 31 H 0.260 0.740 32 H 0.033 0.967 33 H 0.035 0.965 34 H 0.410 0.590 35 H 0.130 0.870 36 H 0.125 0.875 37 H 0.108 0.892 38 H 0.086 0.914 39 H 0.107 0.893 40 H 0.113 0.887 41 H 0.397 0.603 42 H 0.081 0.919 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.149 4.473 16.437 17.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.050 3.950 3 C -0.179 4.179 4 C -0.569 4.569 5 H 0.060 0.940 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.768 3.232 9 H -0.206 1.206 10 H -0.209 1.209 11 H -0.202 1.202 12 C 0.024 3.976 13 N -0.364 5.364 14 C 0.286 3.714 15 O -0.472 6.472 16 C -0.162 4.162 17 C -0.105 4.105 18 H 0.089 0.911 19 C -0.146 4.146 20 C -0.171 4.171 21 C 0.299 3.701 22 O -0.501 6.501 23 N -0.361 5.361 24 C -0.017 4.017 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.035 0.965 28 H 0.035 0.965 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.247 0.753 35 H 0.148 0.852 36 H 0.144 0.856 37 H 0.126 0.874 38 H 0.105 0.895 39 H 0.126 0.874 40 H 0.132 0.868 41 H 0.232 0.768 42 H 0.099 0.901 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.640 3.847 16.821 17.456 hybrid contribution 0.299 -1.024 -1.486 1.829 sum -2.341 2.823 15.335 15.768 Atomic orbital electron populations 1.21670 0.97029 0.98602 1.00553 1.18342 0.93282 0.93004 0.90324 1.21672 0.97811 0.97863 1.00559 1.21321 1.31614 1.12108 0.91828 0.93982 1.25416 0.95204 0.95576 1.00850 1.69898 1.37023 1.23225 1.23545 0.85826 0.78649 0.78554 0.80174 1.20559 1.20858 1.20198 1.21171 0.96731 0.94991 0.84662 1.46179 1.52841 1.31990 1.05425 1.21537 0.79705 0.84432 0.85758 1.90649 1.40403 1.28765 1.87423 1.21735 1.04450 1.01346 0.88704 1.21169 1.00970 0.93567 0.94788 0.91143 1.21742 1.01822 1.00600 0.90478 1.21680 1.04559 0.88598 1.02229 1.20947 0.74785 0.92361 0.82045 1.90721 1.54903 1.71050 1.33453 1.45569 1.67777 1.11558 1.11161 1.21713 1.00790 0.95600 0.83579 0.93902 0.92145 0.96473 0.96516 0.92129 0.93900 0.93065 0.94807 0.94623 0.75285 0.85240 0.85647 0.87381 0.89508 0.87449 0.86842 0.76817 0.90089 0.90809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.02 8.08 71.98 0.58 -4.44 16 2 C 0.05 2.23 0.50 -52.93 -0.03 2.20 16 3 C -0.12 -5.06 8.08 71.98 0.58 -4.48 16 4 C -0.53 -27.32 8.01 25.60 0.21 -27.11 16 5 H 0.04 2.23 7.74 -2.91 -0.02 2.21 16 6 C 0.03 1.51 5.15 84.65 0.44 1.95 16 7 N -0.90 -46.71 9.35 21.45 0.20 -46.51 16 8 Si 0.94 41.85 29.54 68.60 2.03 43.88 16 9 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 12 C 0.15 5.85 4.50 86.38 0.39 6.24 16 13 N -0.71 -20.58 4.96 -463.06 -2.30 -22.88 16 14 C 0.50 13.03 7.59 87.66 0.67 13.69 16 15 O -0.59 -20.58 14.06 -3.03 -0.04 -20.63 16 16 C -0.12 -1.68 5.17 29.85 0.15 -1.52 16 17 C -0.09 -1.29 1.89 -10.71 -0.02 -1.31 16 18 H 0.07 1.37 7.93 -2.38 -0.02 1.36 16 19 C -0.11 -1.01 5.32 30.73 0.16 -0.85 16 20 C -0.13 -1.83 6.03 29.71 0.18 -1.65 16 21 C 0.51 11.61 7.71 87.71 0.68 12.29 16 22 O -0.62 -19.71 17.78 -3.03 -0.05 -19.76 16 23 N -0.71 -14.51 5.45 -467.31 -2.55 -17.05 16 24 C 0.11 1.94 6.12 86.49 0.53 2.47 16 25 H 0.04 1.42 6.86 -2.38 -0.02 1.41 16 26 H 0.06 2.85 6.07 -2.39 -0.01 2.83 16 27 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.02 0.68 8.14 -2.39 -0.02 0.67 16 29 H 0.06 2.86 6.07 -2.39 -0.01 2.85 16 30 H 0.04 1.43 6.86 -2.39 -0.02 1.42 16 31 H 0.26 13.05 8.31 -92.71 -0.77 12.28 16 32 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.41 9.82 6.16 -92.71 -0.57 9.24 16 35 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.13 1.08 8.10 -2.39 -0.02 1.06 16 37 H 0.11 0.51 8.14 -2.38 -0.02 0.49 16 38 H 0.09 0.63 8.13 -2.38 -0.02 0.61 16 39 H 0.11 1.37 8.14 -2.38 -0.02 1.35 16 40 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.40 8.01 8.80 -92.71 -0.82 7.20 16 42 H 0.08 1.18 8.08 -2.38 -0.02 1.16 16 43 H 0.07 1.78 6.23 -2.38 -0.01 1.76 16 Total: -1.00 -67.88 337.12 1.43 -66.45 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -0.37 Total: 19.02 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: 4.51 Total: -2.51 kcal Atomic # 7 Polarization: -81.80 SS G_CDS: -4.64 Total: -86.44 kcal Atomic # 8 Polarization: -40.29 SS G_CDS: -0.10 Total: -40.39 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -67.88 1.43 -66.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556957504.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.217 kcal (2) G-P(sol) polarization free energy of solvation -67.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds