Wall clock time and date at job start Tue Mar 31 2020 05:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46506 * 120.00239 * 2 1 4 4 C 1.50703 * 109.46877 * 269.72094 * 3 2 1 5 5 O 1.21281 * 119.99990 * 0.02562 * 4 3 2 6 6 N 1.34772 * 120.00069 * 179.97438 * 4 3 2 7 7 C 1.46496 * 120.00214 * 180.02562 * 6 4 3 8 8 C 1.53006 * 109.47242 * 179.97438 * 7 6 4 9 9 C 1.52995 * 109.47011 * 300.00239 * 8 7 6 10 10 C 1.53001 * 109.46664 * 59.99862 * 8 7 6 11 11 C 1.50703 * 109.47096 * 179.97438 * 8 7 6 12 12 H 1.08005 * 119.99817 * 0.02562 * 11 8 7 13 13 C 1.37870 * 119.99675 * 180.02562 * 11 8 7 14 14 N 1.31513 * 120.00528 * 359.97438 * 13 11 8 15 15 Si 1.86807 * 119.99811 * 179.97438 * 13 11 8 16 16 H 1.48504 * 109.46899 * 60.00035 * 15 13 11 17 17 H 1.48496 * 109.47049 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47095 * 300.00037 * 15 13 11 19 19 C 1.34777 * 119.99828 * 179.71805 * 2 1 3 20 20 O 1.21284 * 119.99754 * 180.27842 * 19 2 1 21 21 C 1.50696 * 120.00137 * 0.28058 * 19 2 1 22 22 C 1.53001 * 117.49887 * 248.61985 * 21 19 2 23 23 C 1.52994 * 59.99933 * 252.50574 * 22 21 19 24 24 H 1.08998 * 109.46661 * 89.99886 * 1 2 3 25 25 H 1.08993 * 109.47575 * 210.00600 * 1 2 3 26 26 H 1.09001 * 109.46870 * 330.00556 * 1 2 3 27 27 H 1.09000 * 109.46803 * 29.71572 * 3 2 1 28 28 H 1.09000 * 109.47214 * 149.72366 * 3 2 1 29 29 H 0.97000 * 119.99813 * 0.02562 * 6 4 3 30 30 H 1.08997 * 109.47383 * 300.00029 * 7 6 4 31 31 H 1.09000 * 109.47008 * 60.00245 * 7 6 4 32 32 H 1.08999 * 109.47233 * 60.00013 * 9 8 7 33 33 H 1.09002 * 109.46808 * 179.97438 * 9 8 7 34 34 H 1.09000 * 109.47325 * 299.99703 * 9 8 7 35 35 H 1.09005 * 109.47302 * 60.00465 * 10 8 7 36 36 H 1.09002 * 109.46680 * 179.97438 * 10 8 7 37 37 H 1.08999 * 109.47615 * 300.00007 * 10 8 7 38 38 H 0.96998 * 120.00214 * 179.97438 * 14 13 11 39 39 H 1.09004 * 115.54642 * 34.32831 * 21 19 2 40 40 H 1.09001 * 117.49733 * 0.02562 * 22 21 19 41 41 H 1.08997 * 117.49999 * 145.01700 * 22 21 19 42 42 H 1.09004 * 117.50553 * 252.50777 * 23 22 21 43 43 H 1.09012 * 117.51513 * 107.47863 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4547 1.7003 -1.4208 5 8 2.0641 1.0157 -2.3426 6 7 3.1179 2.8474 -1.6672 7 6 3.3674 3.2672 -3.0484 8 6 4.1314 4.5928 -3.0484 9 6 3.3009 5.6602 -2.3331 10 6 5.4655 4.4124 -2.3212 11 6 4.3886 5.0243 -4.4693 12 1 4.0414 4.4143 -5.2901 13 6 5.0671 6.1977 -4.7212 14 7 5.4895 6.9408 -3.7217 15 14 5.3866 6.7323 -6.4824 16 1 4.0922 6.9074 -7.1890 17 1 6.1280 8.0189 -6.4824 18 1 6.1928 5.6957 -7.1758 19 6 2.1388 -1.1672 0.0057 20 8 3.3517 -1.1672 0.0108 21 6 1.3854 -2.4723 0.0058 22 6 1.4552 -3.3283 1.2720 23 6 2.2073 -3.7627 0.0124 24 1 -0.3632 0.0000 -1.0277 25 1 -0.3634 -0.8898 0.5139 26 1 -0.3633 0.8901 0.5138 27 1 1.6063 2.0296 0.5094 28 1 3.1478 1.1396 0.5181 29 1 3.4299 3.3951 -0.9299 30 1 3.9587 2.5066 -3.5581 31 1 2.4169 3.3961 -3.5662 32 1 3.1153 5.3478 -1.3054 33 1 3.8455 6.6044 -2.3327 34 1 2.3505 5.7886 -2.8511 35 1 6.0572 3.6520 -2.8309 36 1 6.0100 5.3567 -2.3217 37 1 5.2799 4.1001 -1.2936 38 1 5.9671 7.7662 -3.8989 39 1 0.4493 -2.4747 -0.5528 40 1 2.0459 -2.9473 2.1051 41 1 0.5650 -3.8940 1.5468 42 1 1.8120 -4.6142 -0.5415 43 1 3.2933 -3.6676 0.0163 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001556957965.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:51 Heat of formation + Delta-G solvation = -47.176090 kcal Electronic energy + Delta-G solvation = -22552.552416 eV Core-core repulsion = 19212.839498 eV Total energy + Delta-G solvation = -3339.712918 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.37485 -38.97858 -36.65519 -36.12724 -35.32840 -33.26344 -30.99842 -29.14162 -26.74629 -25.71679 -25.59351 -24.92949 -23.40173 -22.65783 -20.30999 -19.10458 -18.72867 -17.64243 -17.18084 -16.38136 -15.80622 -15.38570 -14.99239 -14.86117 -14.65610 -14.38988 -13.88244 -13.21376 -13.02250 -12.98897 -12.82615 -12.77335 -12.43491 -12.17433 -11.84124 -11.77413 -11.33474 -11.18208 -10.85107 -10.83461 -10.72661 -10.70595 -10.37297 -10.20415 -9.91028 -9.78451 -9.62371 -9.34433 -8.81226 -8.61465 -8.44163 -8.29706 -6.01278 -4.11448 2.37134 2.78009 3.04835 3.30775 3.34896 3.38552 3.62018 3.87671 4.30584 4.41158 4.55420 4.65525 4.86217 4.93611 5.12203 5.15540 5.25339 5.30922 5.32968 5.38158 5.54175 5.60590 5.69989 5.90770 6.19035 6.29346 6.34320 6.52023 6.78989 6.83530 6.94682 7.03188 7.04701 7.22532 7.36554 7.56672 7.70014 8.02034 8.03067 8.11306 8.17709 8.39526 8.71120 8.89094 9.54309 11.00104 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036750 B = 0.003186 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.717656 B = 8785.741860 C = 8913.758370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.596 5.596 3 C 0.095 3.905 4 C 0.488 3.512 5 O -0.545 6.545 6 N -0.715 5.715 7 C 0.133 3.867 8 C 0.056 3.944 9 C -0.130 4.130 10 C -0.131 4.131 11 C -0.507 4.507 12 H 0.056 0.944 13 C 0.067 3.933 14 N -0.886 5.886 15 Si 0.894 3.106 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C 0.549 3.451 20 O -0.536 6.536 21 C -0.190 4.190 22 C -0.154 4.154 23 C -0.148 4.148 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.106 0.894 28 H 0.111 0.889 29 H 0.398 0.602 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.006 0.994 33 H 0.086 0.914 34 H 0.026 0.974 35 H 0.026 0.974 36 H 0.086 0.914 37 H 0.007 0.993 38 H 0.260 0.740 39 H 0.125 0.875 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.103 0.897 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.410 -13.501 12.409 21.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.328 5.328 3 C -0.032 4.032 4 C 0.272 3.728 5 O -0.423 6.423 6 N -0.367 5.367 7 C 0.011 3.989 8 C 0.056 3.944 9 C -0.188 4.188 10 C -0.189 4.189 11 C -0.546 4.546 12 H 0.075 0.925 13 C -0.135 4.135 14 N -0.525 5.525 15 Si 0.721 3.279 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 C 0.338 3.662 20 O -0.413 6.413 21 C -0.212 4.212 22 C -0.191 4.191 23 C -0.185 4.185 24 H 0.080 0.920 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.124 0.876 28 H 0.129 0.871 29 H 0.233 0.767 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.025 0.975 33 H 0.104 0.896 34 H 0.045 0.955 35 H 0.046 0.954 36 H 0.104 0.896 37 H 0.026 0.974 38 H 0.071 0.929 39 H 0.143 0.857 40 H 0.117 0.883 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.946 -13.795 11.763 20.678 hybrid contribution 0.173 0.770 -0.783 1.111 sum -9.773 -13.025 10.980 19.640 Atomic orbital electron populations 1.21845 0.78849 1.02982 1.02534 1.47231 1.07138 1.04863 1.73550 1.21373 0.99959 0.86321 0.95558 1.20998 0.78758 0.81545 0.91490 1.90657 1.51789 1.53761 1.46061 1.46278 1.56612 1.22885 1.10913 1.21700 0.99527 0.98075 0.79613 1.18349 0.91451 0.88526 0.96099 1.21827 0.98920 1.03135 0.94912 1.21833 0.99636 1.02430 0.94986 1.20958 1.36181 1.06482 0.90940 0.92530 1.24873 0.95274 0.96279 0.97038 1.69791 1.38474 1.14098 1.30134 0.86631 0.78393 0.77793 0.85033 1.20298 1.21308 1.20263 1.19630 0.87248 0.84288 0.75080 1.90700 1.13914 1.87127 1.49541 1.22179 1.02866 0.90720 1.05389 1.22934 1.03180 1.01606 0.91398 1.22962 1.00197 0.95332 1.00047 0.92004 0.90680 0.90963 0.87633 0.87128 0.76736 0.92842 0.92840 0.97492 0.89582 0.95482 0.95440 0.89584 0.97450 0.92946 0.85720 0.88295 0.87830 0.87897 0.87378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.71 10.05 59.85 0.60 1.31 16 2 N -0.60 -7.59 2.36 -182.95 -0.43 -8.02 16 3 C 0.09 1.24 5.93 -5.19 -0.03 1.21 16 4 C 0.49 8.69 7.90 -10.99 -0.09 8.60 16 5 O -0.54 -11.81 16.43 5.56 0.09 -11.72 16 6 N -0.72 -12.96 4.96 -60.30 -0.30 -13.26 16 7 C 0.13 2.91 4.50 -4.04 -0.02 2.89 16 8 C 0.06 1.33 0.50 -155.66 -0.08 1.25 16 9 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 10 C -0.13 -3.02 8.08 37.16 0.30 -2.72 16 11 C -0.51 -13.49 8.01 -34.44 -0.28 -13.76 16 12 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 13 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 14 N -0.89 -23.79 9.35 55.43 0.52 -23.27 16 15 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 19 C 0.55 7.88 7.46 -10.99 -0.08 7.80 16 20 O -0.54 -9.79 15.84 5.55 0.09 -9.70 16 21 C -0.19 -1.96 4.79 -91.77 -0.44 -2.40 16 22 C -0.15 -1.20 10.23 -26.73 -0.27 -1.47 16 23 C -0.15 -1.40 10.04 -26.74 -0.27 -1.67 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.48 6.64 -51.93 -0.34 0.13 16 26 H 0.07 0.49 7.89 -51.93 -0.41 0.08 16 27 H 0.11 0.99 7.89 -51.93 -0.41 0.58 16 28 H 0.11 1.46 7.42 -51.93 -0.39 1.07 16 29 H 0.40 6.37 6.16 -40.82 -0.25 6.12 16 30 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 33 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 34 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 2.17 6.07 -51.93 -0.32 1.86 16 37 H 0.01 0.13 6.86 -51.93 -0.36 -0.22 16 38 H 0.26 6.76 8.31 -40.82 -0.34 6.43 16 39 H 0.12 1.07 7.27 -51.93 -0.38 0.69 16 40 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.11 1.22 7.67 -51.92 -0.40 0.83 16 LS Contribution 348.52 15.07 5.25 5.25 Total: -1.00 -32.77 348.52 -7.09 -39.86 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -6.84 Total: 4.86 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -0.44 Total: 0.08 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: -0.21 Total: -44.55 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: 0.18 Total: -21.42 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.77 -7.09 -39.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556957965.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.314 kcal (2) G-P(sol) polarization free energy of solvation -32.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds