Wall clock time and date at job start Tue Mar 31 2020 05:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50706 * 119.99801 * 2 1 4 4 H 1.08996 * 109.48848 * 359.97058 * 3 2 1 5 5 O 1.42907 * 109.48065 * 239.94252 * 3 2 1 6 6 C 1.42906 * 114.09815 * 178.85768 * 5 3 2 7 7 C 1.53094 * 109.40969 * 61.15932 * 6 5 3 8 8 C 1.53171 * 109.16699 * 302.39144 * 7 6 5 9 9 C 1.53093 * 109.47901 * 120.00280 * 3 2 1 10 10 H 1.08995 * 109.57338 * 57.65425 * 9 3 2 11 11 N 1.46497 * 109.51846 * 297.49570 * 9 3 2 12 12 C 1.34781 * 119.99716 * 155.31938 * 11 9 3 13 13 O 1.21286 * 119.99983 * 359.97438 * 12 11 9 14 14 C 1.50699 * 120.00160 * 179.97438 * 12 11 9 15 15 H 1.09002 * 109.46753 * 39.99710 * 14 12 11 16 16 N 1.46898 * 109.47192 * 159.99754 * 14 12 11 17 17 C 1.52992 * 109.47482 * 279.99980 * 14 12 11 18 18 C 1.52997 * 109.47482 * 174.99860 * 17 14 12 19 19 C 1.50701 * 109.47212 * 179.97438 * 18 17 14 20 20 H 1.07998 * 120.00129 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99861 * 179.97438 * 19 18 17 22 22 N 1.31510 * 119.99913 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99734 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47094 * 90.00289 * 23 21 19 25 25 H 1.48505 * 109.47195 * 210.00171 * 23 21 19 26 26 H 1.48493 * 109.47449 * 330.00136 * 23 21 19 27 27 H 1.08002 * 120.00275 * 179.97438 * 1 2 3 28 28 H 1.08000 * 120.00044 * 359.97438 * 1 2 3 29 29 H 1.07992 * 120.00590 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47822 * 301.17626 * 6 5 3 31 31 H 1.08996 * 109.47782 * 181.13989 * 6 5 3 32 32 H 1.09000 * 109.51744 * 182.48107 * 7 6 5 33 33 H 1.09001 * 109.57263 * 62.33302 * 7 6 5 34 34 H 1.09003 * 109.54299 * 297.11587 * 8 7 6 35 35 H 1.08995 * 109.61960 * 176.89725 * 8 7 6 36 36 H 0.96994 * 120.00502 * 335.31071 * 11 9 3 37 37 H 1.00899 * 111.00057 * 59.99855 * 16 14 12 38 38 H 1.00898 * 110.99947 * 183.96241 * 16 14 12 39 39 H 1.09002 * 109.47103 * 54.99613 * 17 14 12 40 40 H 1.08998 * 109.46862 * 295.00425 * 17 14 12 41 41 H 1.09002 * 109.47153 * 59.99783 * 18 17 14 42 42 H 1.09001 * 109.46832 * 299.99974 * 18 17 14 43 43 H 0.97002 * 119.99768 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3554 2.1338 -0.0005 5 8 2.8861 1.3805 -1.1661 6 6 3.6286 2.5964 -1.2788 7 6 4.5717 2.7295 -0.0802 8 6 3.7511 2.6876 1.2125 9 6 2.9437 1.3865 1.2499 10 1 3.6247 0.5358 1.2729 11 7 2.0981 1.3691 2.4461 12 6 2.6006 0.9389 3.6204 13 8 3.7527 0.5656 3.6866 14 6 1.7310 0.9216 4.8510 15 1 0.7290 0.5866 4.5831 16 7 2.3053 0.0033 5.8435 17 6 1.6566 2.3304 5.4429 18 6 0.6761 2.3391 6.6173 19 6 0.6033 3.7268 7.2006 20 1 1.1967 4.5229 6.7759 21 6 -0.2216 3.9801 8.2760 22 7 -0.9445 3.0108 8.7929 23 14 -0.3124 5.7003 8.9985 24 1 -1.3826 6.4690 8.3138 25 1 -0.6170 5.6124 10.4493 26 1 0.9902 6.3871 8.8070 27 1 -0.5401 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9352 -0.0004 30 1 2.9410 3.4419 -1.2960 31 1 4.2111 2.5824 -2.1999 32 1 5.1069 3.6770 -0.1414 33 1 5.2864 1.9065 -0.0847 34 1 3.0715 3.5394 1.2407 35 1 4.4201 2.7265 2.0721 36 1 1.1767 1.6674 2.3931 37 1 3.2350 0.2924 6.1083 38 1 1.7069 -0.0755 6.6520 39 1 1.3142 3.0280 4.6785 40 1 2.6446 2.6304 5.7920 41 1 1.0186 1.6416 7.3817 42 1 -0.3119 2.0391 6.2680 43 1 -1.5246 3.1889 9.5496 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574960596.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:45 Heat of formation + Delta-G solvation = -82.812104 kcal Electronic energy + Delta-G solvation = -22639.732013 eV Core-core repulsion = 19298.473802 eV Total energy + Delta-G solvation = -3341.258212 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.39620 -39.00044 -35.68478 -35.06066 -34.28449 -32.87189 -32.42796 -29.91131 -29.54303 -26.50278 -25.25607 -24.28760 -22.97472 -20.75347 -20.70042 -20.24161 -19.71579 -17.48848 -16.97432 -16.48115 -16.22528 -15.65935 -15.04488 -14.84724 -14.53949 -14.44019 -14.24071 -14.14441 -13.84951 -13.46311 -12.99000 -12.94307 -12.75236 -12.21296 -12.05380 -11.73223 -11.69519 -11.31793 -11.18168 -11.08292 -10.94194 -10.85338 -10.69524 -10.03284 -10.00431 -9.91974 -9.59499 -9.29845 -9.21143 -8.94312 -8.45908 -8.19120 -6.10406 -4.13587 1.92609 2.93191 3.11753 3.25273 3.32319 3.35496 3.71693 4.37582 4.43791 4.56576 4.64454 4.68972 4.77113 4.90116 5.06568 5.12084 5.18448 5.25919 5.26888 5.37080 5.52263 5.56511 5.59546 5.69086 5.72601 5.75712 5.95859 6.06643 6.26778 6.35077 6.42328 6.47951 6.51163 6.85564 6.92207 7.42321 7.50078 7.59598 7.69517 7.86584 7.90403 8.29179 8.46883 8.92349 9.51391 11.00490 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020007 B = 0.003610 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.208647 B = 7755.074410 C = 8018.700138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.145 4.145 3 C 0.115 3.885 4 H 0.067 0.933 5 O -0.370 6.370 6 C 0.058 3.942 7 C -0.153 4.153 8 C -0.136 4.136 9 C 0.124 3.876 10 H 0.096 0.904 11 N -0.725 5.725 12 C 0.529 3.471 13 O -0.537 6.537 14 C 0.075 3.925 15 H 0.096 0.904 16 N -0.830 5.830 17 C -0.137 4.137 18 C 0.024 3.976 19 C -0.524 4.524 20 H 0.054 0.946 21 C 0.059 3.941 22 N -0.893 5.893 23 Si 0.892 3.108 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.274 1.274 27 H 0.106 0.894 28 H 0.099 0.901 29 H 0.116 0.884 30 H 0.052 0.948 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.400 0.600 37 H 0.345 0.655 38 H 0.354 0.646 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.018 0.982 42 H 0.018 0.982 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.015 -2.456 -19.181 19.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C 0.057 3.943 4 H 0.084 0.916 5 O -0.288 6.288 6 C -0.019 4.019 7 C -0.191 4.191 8 C -0.174 4.174 9 C 0.019 3.981 10 H 0.114 0.886 11 N -0.379 5.379 12 C 0.316 3.684 13 O -0.412 6.412 14 C -0.040 4.040 15 H 0.114 0.886 16 N -0.362 5.362 17 C -0.176 4.176 18 C -0.013 4.013 19 C -0.562 4.562 20 H 0.072 0.928 21 C -0.143 4.143 22 N -0.532 5.532 23 Si 0.720 3.280 24 H -0.206 1.206 25 H -0.211 1.211 26 H -0.199 1.199 27 H 0.124 0.876 28 H 0.117 0.883 29 H 0.134 0.866 30 H 0.070 0.930 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.234 0.766 37 H 0.158 0.842 38 H 0.169 0.831 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.036 0.964 42 H 0.037 0.963 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.677 -3.495 -19.690 20.788 hybrid contribution -0.558 2.253 1.305 2.663 sum 5.119 -1.242 -18.385 19.125 Atomic orbital electron populations 1.23913 0.95484 1.02470 0.98817 1.22600 0.95587 0.97291 1.00807 1.21348 0.91348 0.96476 0.85176 0.91560 1.88002 1.60082 1.39147 1.41535 1.22657 0.93732 0.86885 0.98596 1.22190 0.98977 1.03242 0.94732 1.22042 0.99439 0.97486 0.98475 1.21429 0.93018 0.99352 0.84349 0.88638 1.45883 1.15620 1.67947 1.08428 1.20885 0.88233 0.75075 0.84222 1.90632 1.18484 1.46837 1.85280 1.21465 0.97246 0.94605 0.90678 0.88606 1.58734 1.07688 1.52096 1.17731 1.22373 1.01729 0.93173 1.00374 1.19103 0.93363 0.97440 0.91383 1.21176 1.25079 0.95213 1.14767 0.92757 1.25009 0.95478 0.97052 0.96745 1.69947 1.27099 1.31774 1.24341 0.86587 0.78406 0.84620 0.78370 1.20615 1.21126 1.19899 0.87594 0.88281 0.86625 0.92956 0.88518 0.90467 0.90716 0.91444 0.90441 0.76562 0.84164 0.83057 0.92615 0.92725 0.96384 0.96331 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 14.32 29.02 0.42 -1.05 16 2 C -0.14 -1.46 8.82 -36.02 -0.32 -1.78 16 3 C 0.11 1.18 2.58 -27.83 -0.07 1.11 16 4 H 0.07 0.62 7.79 -51.93 -0.40 0.21 16 5 O -0.37 -4.01 10.39 -35.23 -0.37 -4.38 16 6 C 0.06 0.48 6.84 37.21 0.25 0.74 16 7 C -0.15 -1.37 6.14 -26.59 -0.16 -1.53 16 8 C -0.14 -1.51 5.60 -26.55 -0.15 -1.66 16 9 C 0.12 1.48 2.06 -67.79 -0.14 1.34 16 10 H 0.10 1.35 7.58 -51.93 -0.39 0.96 16 11 N -0.73 -9.29 4.73 -53.67 -0.25 -9.54 16 12 C 0.53 8.64 7.04 -10.98 -0.08 8.56 16 13 O -0.54 -10.38 15.92 5.55 0.09 -10.30 16 14 C 0.08 1.27 3.21 -68.87 -0.22 1.05 16 15 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 16 N -0.83 -14.32 8.94 -5.66 -0.05 -14.37 16 17 C -0.14 -2.65 4.78 -26.74 -0.13 -2.77 16 18 C 0.02 0.58 4.74 -27.88 -0.13 0.45 16 19 C -0.52 -14.27 9.11 -34.44 -0.31 -14.58 16 20 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 22 N -0.89 -25.86 13.29 55.43 0.74 -25.13 16 23 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 27 H 0.11 0.81 8.06 -52.49 -0.42 0.38 16 28 H 0.10 0.76 7.83 -52.49 -0.41 0.35 16 29 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.40 4.40 8.60 -40.82 -0.35 4.05 16 37 H 0.35 6.05 8.58 -39.29 -0.34 5.71 16 38 H 0.35 6.11 7.55 -39.29 -0.30 5.82 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 353.20 15.07 5.32 5.32 Total: -1.00 -31.26 353.20 -7.85 -39.11 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -7.17 Total: 11.76 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: -1.14 Total: -8.59 kcal Atomic # 7 Polarization: -49.47 SS G_CDS: 0.43 Total: -49.04 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.28 Total: -14.68 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.26 -7.85 -39.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574960596.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.700 kcal (2) G-P(sol) polarization free energy of solvation -31.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds