Wall clock time and date at job start Tue Mar 31 2020 05:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50706 * 119.99801 * 2 1 4 4 H 1.08996 * 109.48848 * 359.97058 * 3 2 1 5 5 O 1.42907 * 109.48065 * 239.94252 * 3 2 1 6 6 C 1.42906 * 114.09815 * 178.85768 * 5 3 2 7 7 C 1.53094 * 109.40969 * 61.15932 * 6 5 3 8 8 C 1.53171 * 109.16699 * 302.39144 * 7 6 5 9 9 C 1.53093 * 109.47901 * 120.00280 * 3 2 1 10 10 H 1.08995 * 109.57338 * 57.65425 * 9 3 2 11 11 N 1.46497 * 109.51846 * 297.49570 * 9 3 2 12 12 C 1.34781 * 119.99716 * 155.31938 * 11 9 3 13 13 O 1.21286 * 119.99983 * 359.97438 * 12 11 9 14 14 C 1.50699 * 120.00160 * 179.97438 * 12 11 9 15 15 H 1.09002 * 109.46753 * 39.99710 * 14 12 11 16 16 N 1.46898 * 109.47192 * 159.99754 * 14 12 11 17 17 C 1.52992 * 109.47482 * 279.99980 * 14 12 11 18 18 C 1.52997 * 109.47482 * 174.99860 * 17 14 12 19 19 C 1.50701 * 109.47212 * 179.97438 * 18 17 14 20 20 H 1.07998 * 120.00129 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99861 * 179.97438 * 19 18 17 22 22 N 1.31510 * 119.99913 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99734 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47094 * 90.00289 * 23 21 19 25 25 H 1.48505 * 109.47195 * 210.00171 * 23 21 19 26 26 H 1.48493 * 109.47449 * 330.00136 * 23 21 19 27 27 H 1.08002 * 120.00275 * 179.97438 * 1 2 3 28 28 H 1.08000 * 120.00044 * 359.97438 * 1 2 3 29 29 H 1.07992 * 120.00590 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47822 * 301.17626 * 6 5 3 31 31 H 1.08996 * 109.47782 * 181.13989 * 6 5 3 32 32 H 1.09000 * 109.51744 * 182.48107 * 7 6 5 33 33 H 1.09001 * 109.57263 * 62.33302 * 7 6 5 34 34 H 1.09003 * 109.54299 * 297.11587 * 8 7 6 35 35 H 1.08995 * 109.61960 * 176.89725 * 8 7 6 36 36 H 0.96994 * 120.00502 * 335.31071 * 11 9 3 37 37 H 1.00899 * 111.00057 * 59.99855 * 16 14 12 38 38 H 1.00898 * 110.99947 * 183.96241 * 16 14 12 39 39 H 1.09002 * 109.47103 * 54.99613 * 17 14 12 40 40 H 1.08998 * 109.46862 * 295.00425 * 17 14 12 41 41 H 1.09002 * 109.47153 * 59.99783 * 18 17 14 42 42 H 1.09001 * 109.46832 * 299.99974 * 18 17 14 43 43 H 0.97002 * 119.99768 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3554 2.1338 -0.0005 5 8 2.8861 1.3805 -1.1661 6 6 3.6286 2.5964 -1.2788 7 6 4.5717 2.7295 -0.0802 8 6 3.7511 2.6876 1.2125 9 6 2.9437 1.3865 1.2499 10 1 3.6247 0.5358 1.2729 11 7 2.0981 1.3691 2.4461 12 6 2.6006 0.9389 3.6204 13 8 3.7527 0.5656 3.6866 14 6 1.7310 0.9216 4.8510 15 1 0.7290 0.5866 4.5831 16 7 2.3053 0.0033 5.8435 17 6 1.6566 2.3304 5.4429 18 6 0.6761 2.3391 6.6173 19 6 0.6033 3.7268 7.2006 20 1 1.1967 4.5229 6.7759 21 6 -0.2216 3.9801 8.2760 22 7 -0.9445 3.0108 8.7929 23 14 -0.3124 5.7003 8.9985 24 1 -1.3826 6.4690 8.3138 25 1 -0.6170 5.6124 10.4493 26 1 0.9902 6.3871 8.8070 27 1 -0.5401 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9352 -0.0004 30 1 2.9410 3.4419 -1.2960 31 1 4.2111 2.5824 -2.1999 32 1 5.1069 3.6770 -0.1414 33 1 5.2864 1.9065 -0.0847 34 1 3.0715 3.5394 1.2407 35 1 4.4201 2.7265 2.0721 36 1 1.1767 1.6674 2.3931 37 1 3.2350 0.2924 6.1083 38 1 1.7069 -0.0755 6.6520 39 1 1.3142 3.0280 4.6785 40 1 2.6446 2.6304 5.7920 41 1 1.0186 1.6416 7.3817 42 1 -0.3119 2.0391 6.2680 43 1 -1.5246 3.1889 9.5496 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574960596.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:45 Heat of formation + Delta-G solvation = -105.326616 kcal Electronic energy + Delta-G solvation = -22640.708316 eV Core-core repulsion = 19298.473802 eV Total energy + Delta-G solvation = -3342.234514 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.44387 -40.09281 -37.14856 -36.19170 -35.06835 -34.83316 -33.35949 -31.68551 -30.45930 -28.08955 -26.11104 -25.79008 -24.08749 -22.36296 -21.60109 -21.19787 -20.82615 -18.94788 -18.14951 -17.92029 -17.28847 -16.68026 -16.46185 -16.09745 -15.98139 -15.65935 -15.39402 -15.11646 -14.86720 -14.77603 -14.49802 -14.14890 -13.94474 -13.56834 -13.45777 -12.94677 -12.84276 -12.68212 -12.55056 -12.50640 -12.18126 -11.89969 -11.81179 -11.73083 -11.58391 -11.30183 -10.80429 -10.73179 -10.55810 -10.39805 -10.01290 -9.64772 -8.21286 -6.31573 1.20752 1.39590 1.40670 1.50941 1.60657 2.01462 2.40094 2.95936 3.12556 3.55956 3.70565 3.76700 3.79202 3.87565 3.97150 4.03893 4.12886 4.16709 4.25162 4.38287 4.50048 4.62655 4.66253 4.76235 4.81202 4.84874 4.96260 4.99829 5.08620 5.09954 5.21564 5.40657 5.46831 5.65438 5.65995 5.70882 5.80887 6.06480 6.18550 6.21402 6.46893 6.50610 6.83925 7.22304 7.37611 8.89470 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020007 B = 0.003610 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.208647 B = 7755.074410 C = 8018.700138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.170 4.170 3 C 0.123 3.877 4 H 0.083 0.917 5 O -0.386 6.386 6 C 0.054 3.946 7 C -0.148 4.148 8 C -0.134 4.134 9 C 0.125 3.875 10 H 0.069 0.931 11 N -0.708 5.708 12 C 0.531 3.469 13 O -0.571 6.571 14 C 0.082 3.918 15 H 0.110 0.890 16 N -0.831 5.831 17 C -0.119 4.119 18 C 0.030 3.970 19 C -0.545 4.545 20 H 0.054 0.946 21 C 0.006 3.994 22 N -0.926 5.926 23 Si 0.958 3.042 24 H -0.271 1.271 25 H -0.283 1.283 26 H -0.268 1.268 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.104 0.896 30 H 0.067 0.933 31 H 0.116 0.884 32 H 0.096 0.904 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.051 0.949 36 H 0.412 0.588 37 H 0.343 0.657 38 H 0.353 0.647 39 H 0.067 0.933 40 H 0.042 0.958 41 H 0.002 0.998 42 H 0.003 0.997 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.415 -1.024 -20.592 21.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.188 4.188 3 C 0.064 3.936 4 H 0.101 0.899 5 O -0.304 6.304 6 C -0.022 4.022 7 C -0.187 4.187 8 C -0.173 4.173 9 C 0.020 3.980 10 H 0.087 0.913 11 N -0.361 5.361 12 C 0.318 3.682 13 O -0.449 6.449 14 C -0.033 4.033 15 H 0.128 0.872 16 N -0.362 5.362 17 C -0.159 4.159 18 C -0.007 4.007 19 C -0.583 4.583 20 H 0.073 0.927 21 C -0.192 4.192 22 N -0.566 5.566 23 Si 0.783 3.217 24 H -0.196 1.196 25 H -0.209 1.209 26 H -0.193 1.193 27 H 0.134 0.866 28 H 0.132 0.868 29 H 0.122 0.878 30 H 0.085 0.915 31 H 0.134 0.866 32 H 0.114 0.886 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.248 0.752 37 H 0.156 0.844 38 H 0.168 0.832 39 H 0.086 0.914 40 H 0.061 0.939 41 H 0.020 0.980 42 H 0.022 0.978 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.060 -2.051 -21.139 21.833 hybrid contribution -0.385 1.776 1.710 2.495 sum 4.675 -0.275 -19.430 19.986 Atomic orbital electron populations 1.24132 0.94961 1.03667 0.96423 1.22612 0.96230 0.96923 1.03053 1.21292 0.91069 0.97174 0.84025 0.89892 1.87997 1.60433 1.40543 1.41434 1.22854 0.93863 0.86522 0.98915 1.22175 0.98764 1.03853 0.93871 1.22014 0.99316 0.97253 0.98724 1.21477 0.93004 0.98845 0.84678 0.91303 1.45728 1.16239 1.66366 1.07767 1.20709 0.87532 0.75114 0.84892 1.90623 1.19761 1.48635 1.85869 1.21402 0.98146 0.92933 0.90844 0.87235 1.58749 1.07574 1.52073 1.17793 1.22119 0.99643 0.95170 0.98995 1.18969 0.93609 0.95671 0.92478 1.21615 1.24952 0.96573 1.15118 0.92726 1.25852 0.95159 1.01000 0.97234 1.70059 1.27844 1.33832 1.24897 0.85550 0.78708 0.79897 0.77519 1.19637 1.20883 1.19276 0.86638 0.86832 0.87757 0.91457 0.86638 0.88598 0.91776 0.90321 0.93043 0.75167 0.84394 0.83220 0.91439 0.93871 0.98009 0.97844 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 14.32 67.79 0.97 -1.36 16 2 C -0.17 -3.22 8.82 25.65 0.23 -3.00 16 3 C 0.12 2.33 2.58 29.88 0.08 2.41 16 4 H 0.08 1.31 7.79 -2.39 -0.02 1.29 16 5 O -0.39 -7.75 10.39 -148.98 -1.55 -9.30 16 6 C 0.05 0.78 6.84 72.01 0.49 1.28 16 7 C -0.15 -2.44 6.14 30.68 0.19 -2.25 16 8 C -0.13 -2.87 5.60 30.71 0.17 -2.70 16 9 C 0.13 2.91 2.06 45.08 0.09 3.00 16 10 H 0.07 2.00 7.58 -2.39 -0.02 1.98 16 11 N -0.71 -17.44 4.73 -442.10 -2.09 -19.53 16 12 C 0.53 17.16 7.04 87.66 0.62 17.78 16 13 O -0.57 -22.35 15.92 -3.05 -0.05 -22.40 16 14 C 0.08 2.72 3.21 44.17 0.14 2.86 16 15 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 16 N -0.83 -28.77 8.94 -171.81 -1.54 -30.30 16 17 C -0.12 -4.57 4.78 30.59 0.15 -4.43 16 18 C 0.03 1.45 4.74 29.85 0.14 1.59 16 19 C -0.54 -29.56 9.11 25.60 0.23 -29.32 16 20 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 21 C 0.01 0.34 5.46 84.66 0.46 0.80 16 22 N -0.93 -53.88 13.29 21.45 0.28 -53.59 16 23 Si 0.96 42.91 29.54 68.60 2.03 44.93 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 25 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 26 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 27 H 0.12 1.50 8.06 -2.91 -0.02 1.48 16 28 H 0.11 1.38 7.83 -2.91 -0.02 1.35 16 29 H 0.10 2.17 8.06 -2.91 -0.02 2.15 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.41 8.24 8.60 -92.71 -0.80 7.44 16 37 H 0.34 12.19 8.58 -89.69 -0.77 11.42 16 38 H 0.35 12.33 7.55 -89.70 -0.68 11.65 16 39 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.00 0.08 6.87 -2.39 -0.02 0.07 16 42 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 43 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -66.85 353.20 -0.18 -67.03 By element: Atomic # 1 Polarization: 37.73 SS G_CDS: -1.23 Total: 36.49 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: 3.96 Total: -13.34 kcal Atomic # 7 Polarization: -100.08 SS G_CDS: -3.34 Total: -103.42 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -1.60 Total: -31.70 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Total: -66.85 -0.18 -67.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574960596.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.296 kcal (2) G-P(sol) polarization free energy of solvation -66.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds