Wall clock time and date at job start Tue Mar 31 2020 05:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31010 * 1 3 3 C 1.50702 * 120.00190 * 2 1 4 4 H 1.09006 * 109.48756 * 359.97438 * 3 2 1 5 5 O 1.42900 * 109.48179 * 239.94515 * 3 2 1 6 6 C 1.42899 * 114.09591 * 178.85719 * 5 3 2 7 7 C 1.53097 * 109.41328 * 61.16207 * 6 5 3 8 8 C 1.53172 * 109.16269 * 302.38715 * 7 6 5 9 9 C 1.53089 * 109.47705 * 120.00431 * 3 2 1 10 10 H 1.09003 * 109.57662 * 57.65508 * 9 3 2 11 11 N 1.46501 * 109.52212 * 297.49789 * 9 3 2 12 12 C 1.34780 * 120.00303 * 155.31900 * 11 9 3 13 13 O 1.21276 * 119.99558 * 359.97438 * 12 11 9 14 14 C 1.50693 * 120.00341 * 179.97438 * 12 11 9 15 15 H 1.09004 * 109.47297 * 319.99720 * 14 12 11 16 16 N 1.46893 * 109.47488 * 200.00010 * 14 12 11 17 17 C 1.53000 * 109.47227 * 79.99587 * 14 12 11 18 18 C 1.53001 * 109.47355 * 184.99987 * 17 14 12 19 19 C 1.50694 * 109.47168 * 180.02562 * 18 17 14 20 20 H 1.08000 * 120.00563 * 0.02562 * 19 18 17 21 21 C 1.37885 * 119.99902 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99913 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99766 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47353 * 269.99586 * 23 21 19 25 25 H 1.48501 * 109.47293 * 30.00037 * 23 21 19 26 26 H 1.48504 * 109.46680 * 149.99835 * 23 21 19 27 27 H 1.07997 * 119.99424 * 359.97438 * 1 2 3 28 28 H 1.07995 * 119.99985 * 179.97438 * 1 2 3 29 29 H 1.07997 * 119.99424 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.48423 * 301.17579 * 6 5 3 31 31 H 1.09006 * 109.47814 * 181.13734 * 6 5 3 32 32 H 1.09000 * 109.52111 * 182.48178 * 7 6 5 33 33 H 1.09001 * 109.57114 * 62.32505 * 7 6 5 34 34 H 1.09000 * 109.54418 * 297.11660 * 8 7 6 35 35 H 1.08999 * 109.54870 * 176.84618 * 8 7 6 36 36 H 0.97007 * 120.00253 * 335.31379 * 11 9 3 37 37 H 1.00907 * 110.99661 * 299.99744 * 16 14 12 38 38 H 1.00896 * 111.00206 * 63.94733 * 16 14 12 39 39 H 1.09002 * 109.46807 * 65.00278 * 17 14 12 40 40 H 1.08998 * 109.47285 * 304.99880 * 17 14 12 41 41 H 1.09007 * 109.46922 * 59.99890 * 18 17 14 42 42 H 1.09003 * 109.46836 * 300.00646 * 18 17 14 43 43 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0637 1.3051 0.0000 4 1 1.3556 2.1338 -0.0005 5 8 2.8863 1.3804 -1.1660 6 6 3.6288 2.5962 -1.2787 7 6 4.5720 2.7293 -0.0801 8 6 3.7514 2.6875 1.2126 9 6 2.9439 1.3863 1.2499 10 1 3.6250 0.5355 1.2728 11 7 2.0984 1.3689 2.4461 12 6 2.6009 0.9386 3.6204 13 8 3.7528 0.5653 3.6866 14 6 1.7313 0.9213 4.8510 15 1 1.1117 1.8179 4.8708 16 7 2.5797 0.8860 6.0497 17 6 0.8343 -0.3180 4.8244 18 6 -0.1345 -0.2719 6.0076 19 6 -1.0175 -1.4927 5.9817 20 1 -0.8993 -2.2283 5.1997 21 6 -1.9765 -1.6708 6.9563 22 7 -2.1202 -0.7754 7.9088 23 14 -3.0715 -3.1838 6.9237 24 1 -4.2910 -2.8953 6.1268 25 1 -2.3337 -4.3157 6.3074 26 1 -3.4604 -3.5433 8.3111 27 1 -0.5399 0.9353 0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 2.9412 3.4418 -1.2958 31 1 4.2114 2.5823 -2.1999 32 1 5.1072 3.6768 -0.1413 33 1 5.2866 1.9062 -0.0847 34 1 3.0718 3.5392 1.2408 35 1 4.4215 2.7254 2.0714 36 1 1.1768 1.6672 2.3932 37 1 3.1641 0.0634 6.0549 38 1 3.1354 1.7248 6.1242 39 1 1.4508 -1.2142 4.8943 40 1 0.2691 -0.3374 3.8926 41 1 -0.7510 0.6244 5.9378 42 1 0.4307 -0.2523 6.9394 43 1 -2.7951 -0.9005 8.5942 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574960597.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:49 Heat of formation + Delta-G solvation = -81.703341 kcal Electronic energy + Delta-G solvation = -22704.368758 eV Core-core repulsion = 19363.158626 eV Total energy + Delta-G solvation = -3341.210132 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.48068 -39.12210 -35.54439 -35.01960 -34.29638 -32.80426 -32.47844 -30.11793 -29.53586 -26.39339 -25.31215 -24.20649 -22.87744 -20.78604 -20.69375 -20.17017 -19.72644 -17.41197 -17.00196 -16.41758 -16.20987 -15.69581 -15.48840 -14.88518 -14.85523 -14.43684 -14.20365 -14.18504 -13.75768 -13.42408 -13.34606 -12.79877 -12.32842 -12.11024 -12.00950 -11.75704 -11.57395 -11.40031 -11.21405 -10.89712 -10.88169 -10.65234 -10.55481 -10.12327 -10.03041 -9.79585 -9.57395 -9.37397 -9.04732 -8.98623 -8.35216 -8.20501 -5.93896 -3.95926 1.98844 2.76617 3.10388 3.34355 3.41057 3.44503 3.70517 4.40283 4.49846 4.51289 4.56469 4.62745 4.74526 4.87388 4.89271 5.08223 5.11821 5.23573 5.31996 5.41678 5.44506 5.50686 5.55424 5.64994 5.74975 5.82699 5.85822 5.97555 6.36911 6.43479 6.45964 6.48645 6.65707 6.89690 7.08868 7.36588 7.58415 7.75924 7.79353 7.96233 8.13071 8.31240 8.48547 9.12075 9.67198 11.17013 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022032 B = 0.003836 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.570068 B = 7297.885119 C = 8271.209373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.151 4.151 3 C 0.116 3.884 4 H 0.066 0.934 5 O -0.369 6.369 6 C 0.058 3.942 7 C -0.153 4.153 8 C -0.133 4.133 9 C 0.120 3.880 10 H 0.095 0.905 11 N -0.721 5.721 12 C 0.487 3.513 13 O -0.552 6.552 14 C 0.079 3.921 15 H 0.097 0.903 16 N -0.807 5.807 17 C -0.094 4.094 18 C 0.031 3.969 19 C -0.522 4.522 20 H 0.052 0.948 21 C 0.058 3.942 22 N -0.893 5.893 23 Si 0.888 3.112 24 H -0.282 1.282 25 H -0.275 1.275 26 H -0.287 1.287 27 H 0.098 0.902 28 H 0.108 0.892 29 H 0.116 0.884 30 H 0.052 0.948 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.402 0.598 37 H 0.348 0.652 38 H 0.333 0.667 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.012 0.988 42 H 0.035 0.965 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.739 9.260 -17.617 22.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C 0.058 3.942 4 H 0.084 0.916 5 O -0.287 6.287 6 C -0.019 4.019 7 C -0.192 4.192 8 C -0.172 4.172 9 C 0.014 3.986 10 H 0.113 0.887 11 N -0.374 5.374 12 C 0.272 3.728 13 O -0.430 6.430 14 C -0.037 4.037 15 H 0.115 0.885 16 N -0.334 5.334 17 C -0.133 4.133 18 C -0.006 4.006 19 C -0.560 4.560 20 H 0.070 0.930 21 C -0.143 4.143 22 N -0.532 5.532 23 Si 0.717 3.283 24 H -0.208 1.208 25 H -0.200 1.200 26 H -0.213 1.213 27 H 0.117 0.883 28 H 0.126 0.874 29 H 0.134 0.866 30 H 0.070 0.930 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.236 0.764 37 H 0.162 0.838 38 H 0.145 0.855 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.031 0.969 42 H 0.053 0.947 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.797 8.835 -17.116 21.610 hybrid contribution -0.239 -0.370 -0.510 0.674 sum 9.558 8.465 -17.626 21.764 Atomic orbital electron populations 1.23944 0.95436 1.02635 0.97936 1.22567 0.95607 0.97143 1.01601 1.21340 0.91227 0.96605 0.85012 0.91649 1.88019 1.60049 1.39003 1.41626 1.22648 0.93707 0.86982 0.98553 1.22193 0.99003 1.03201 0.94771 1.22019 0.99279 0.97449 0.98442 1.21478 0.93185 0.99222 0.84732 0.88713 1.46061 1.15551 1.67234 1.08537 1.22759 0.89005 0.75050 0.85947 1.90640 1.18876 1.47780 1.85695 1.21837 0.94292 1.03085 0.84487 0.88511 1.59003 1.29619 1.07859 1.36952 1.21650 0.96801 0.93031 1.01798 1.19014 0.92471 0.96395 0.92690 1.21276 1.17234 1.06796 1.10695 0.92995 1.24992 0.97461 0.96328 0.95550 1.69976 1.34254 1.34795 1.14172 0.86656 0.80935 0.83582 0.77172 1.20780 1.19970 1.21273 0.88331 0.87365 0.86643 0.93010 0.88507 0.90511 0.90704 0.91590 0.90697 0.76398 0.83822 0.85519 0.92892 0.92783 0.96919 0.94700 0.93113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 14.32 29.01 0.42 -1.20 16 2 C -0.15 -1.66 8.82 -36.03 -0.32 -1.98 16 3 C 0.12 1.21 2.58 -27.84 -0.07 1.14 16 4 H 0.07 0.60 7.79 -51.93 -0.40 0.19 16 5 O -0.37 -4.01 10.39 -35.23 -0.37 -4.38 16 6 C 0.06 0.46 6.84 37.21 0.25 0.71 16 7 C -0.15 -1.26 6.14 -26.59 -0.16 -1.42 16 8 C -0.13 -1.33 5.60 -26.55 -0.15 -1.48 16 9 C 0.12 1.38 2.06 -67.79 -0.14 1.24 16 10 H 0.09 1.34 7.58 -51.93 -0.39 0.94 16 11 N -0.72 -8.85 4.73 -53.67 -0.25 -9.10 16 12 C 0.49 7.50 7.03 -10.99 -0.08 7.42 16 13 O -0.55 -10.02 15.92 5.56 0.09 -9.93 16 14 C 0.08 1.30 3.15 -68.87 -0.22 1.08 16 15 H 0.10 1.50 8.14 -51.93 -0.42 1.07 16 16 N -0.81 -13.52 8.44 -5.66 -0.05 -13.57 16 17 C -0.09 -1.89 4.78 -26.73 -0.13 -2.01 16 18 C 0.03 0.80 4.86 -27.89 -0.14 0.66 16 19 C -0.52 -14.66 9.11 -34.44 -0.31 -14.98 16 20 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 22 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 23 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H 0.10 0.85 7.83 -52.49 -0.41 0.44 16 28 H 0.11 1.04 8.06 -52.49 -0.42 0.61 16 29 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.40 4.26 8.60 -40.82 -0.35 3.91 16 37 H 0.35 5.95 8.58 -39.29 -0.34 5.62 16 38 H 0.33 4.84 9.06 -39.29 -0.36 4.48 16 39 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.01 0.33 8.14 -51.92 -0.42 -0.09 16 42 H 0.03 0.96 7.75 -51.93 -0.40 0.56 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 355.16 15.07 5.35 5.35 Total: -1.00 -32.43 355.16 -7.92 -40.35 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -7.27 Total: 9.97 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: -1.14 Total: -9.26 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: 0.43 Total: -48.76 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -0.28 Total: -14.31 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.43 -7.92 -40.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574960597.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.352 kcal (2) G-P(sol) polarization free energy of solvation -32.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds