Wall clock time and date at job start Tue Mar 31 2020 06:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.47000 * 2 1 4 4 N 1.46497 * 109.47216 * 119.99378 * 2 1 3 5 5 C 1.46506 * 119.99902 * 118.04182 * 4 2 1 6 6 C 1.50695 * 109.47296 * 270.00676 * 5 4 2 7 7 H 1.08010 * 119.99929 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00461 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99767 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 120.00327 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47034 * 89.99556 * 10 8 6 12 12 H 1.48497 * 109.46870 * 209.99405 * 10 8 6 13 13 H 1.48502 * 109.47030 * 329.99542 * 10 8 6 14 14 C 1.34770 * 120.00580 * 298.04395 * 4 2 1 15 15 O 1.21289 * 119.99916 * 5.20545 * 14 4 2 16 16 C 1.50700 * 120.00544 * 185.20306 * 14 4 2 17 17 C 1.53001 * 109.47342 * 174.46892 * 16 14 4 18 18 H 1.08994 * 109.60458 * 54.99701 * 17 16 14 19 19 C 1.53345 * 109.73762 * 175.41045 * 17 16 14 20 20 C 1.53059 * 108.43753 * 187.35091 * 19 17 16 21 21 C 1.50177 * 109.89177 * 311.10876 * 20 19 17 22 22 O 1.21274 * 118.24747 * 197.56196 * 21 20 19 23 23 N 1.33354 * 123.50704 * 17.58909 * 21 20 19 24 24 C 1.45752 * 124.10983 * 357.74530 * 23 21 20 25 25 H 1.08994 * 109.47913 * 297.45211 * 1 2 3 26 26 H 1.09002 * 109.47165 * 57.45852 * 1 2 3 27 27 H 1.09006 * 109.46980 * 177.45333 * 1 2 3 28 28 H 1.09000 * 109.47583 * 240.00339 * 2 1 3 29 29 H 1.08998 * 109.47585 * 184.08962 * 3 2 1 30 30 H 1.08998 * 109.46647 * 304.09038 * 3 2 1 31 31 H 1.08999 * 109.47056 * 64.08846 * 3 2 1 32 32 H 1.09005 * 109.46786 * 29.99949 * 5 4 2 33 33 H 1.08991 * 109.47431 * 149.99995 * 5 4 2 34 34 H 0.96997 * 120.00005 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.47035 * 54.46496 * 16 14 4 36 36 H 1.09005 * 109.46949 * 294.46236 * 16 14 4 37 37 H 1.08999 * 109.66833 * 307.09616 * 19 17 16 38 38 H 1.08995 * 109.67706 * 67.62906 * 19 17 16 39 39 H 1.08993 * 109.39833 * 190.98066 * 20 19 17 40 40 H 1.08995 * 109.33233 * 71.19383 * 20 19 17 41 41 H 0.97002 * 117.94645 * 177.77675 * 23 21 20 42 42 H 1.08999 * 109.30257 * 258.79407 * 24 23 21 43 43 H 1.08997 * 109.30340 * 139.41237 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.8248 -1.9062 1.0623 6 6 1.9191 -3.1105 1.0444 7 1 0.8496 -2.9831 1.1251 8 6 2.4557 -4.3750 0.9260 9 7 3.7580 -4.5302 0.8282 10 14 1.3330 -5.8679 0.9044 11 1 0.9416 -6.1727 -0.4952 12 1 2.0482 -7.0334 1.4834 13 1 0.1168 -5.5842 1.7080 14 6 1.7256 -0.2074 2.4199 15 8 0.9808 0.7429 2.5345 16 6 2.3237 -0.8481 3.6458 17 6 1.9458 -0.0320 4.8836 18 1 0.8623 0.0740 4.9350 19 6 2.4540 -0.7398 6.1455 20 6 1.9049 -0.0017 7.3688 21 6 2.1452 1.4738 7.2257 22 8 2.0745 2.1658 8.2191 23 7 2.4316 2.0638 6.0646 24 6 2.5935 1.3510 4.8036 25 1 -0.3635 0.4737 0.9118 26 1 -0.3633 0.5528 -0.8663 27 1 -0.3633 -1.0267 -0.0457 28 1 1.8933 -0.5138 -0.8900 29 1 3.1274 1.4436 -0.0733 30 1 1.6179 1.9770 -0.8511 31 1 1.7376 1.9348 0.9243 32 1 3.3927 -1.8648 0.1328 33 1 3.5121 -1.9809 1.9049 34 1 4.1355 -5.4197 0.7445 35 1 3.4089 -0.8778 3.5475 36 1 1.9403 -1.8632 3.7490 37 1 2.1050 -1.7724 6.1526 38 1 3.5436 -0.7200 6.1638 39 1 2.4063 -0.3649 8.2659 40 1 0.8342 -0.1878 7.4520 41 1 2.5393 3.0278 6.0589 42 1 3.6559 1.2393 4.5867 43 1 2.1238 1.9230 4.0035 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598244744.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:25 Heat of formation + Delta-G solvation = -95.786557 kcal Electronic energy + Delta-G solvation = -23343.546054 eV Core-core repulsion = 20001.725227 eV Total energy + Delta-G solvation = -3341.820826 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.35498 -39.37396 -36.77531 -35.30519 -33.53250 -33.08259 -31.83965 -30.70162 -27.19063 -26.67264 -26.39892 -24.38602 -22.99763 -22.29353 -21.04768 -18.96051 -18.09934 -17.06774 -16.72438 -16.18874 -15.91145 -15.56401 -15.18657 -14.73410 -14.46893 -14.24335 -13.87908 -13.45643 -13.23934 -13.12089 -12.87394 -12.58907 -12.30669 -12.04725 -11.92286 -11.57400 -11.49893 -11.31238 -11.05819 -10.98558 -10.94727 -10.85031 -10.74174 -10.60034 -10.42296 -10.11082 -9.76620 -9.68196 -9.02449 -8.79468 -8.60406 -7.75701 -6.24911 -4.32467 2.69900 3.17759 3.25574 3.26901 3.35381 3.38333 3.83005 4.27641 4.62211 4.75554 4.79799 4.86233 5.08563 5.26157 5.38862 5.43979 5.53858 5.62557 5.65264 5.75238 5.77665 5.79983 5.86839 5.93624 6.06240 6.11478 6.19765 6.28811 6.32855 6.40468 6.43378 6.68283 6.75934 6.81106 6.82700 7.11508 7.39298 7.53803 7.70784 7.99196 8.25698 8.31454 8.73540 8.97163 9.36182 10.81602 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015532 B = 0.005254 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.341073 B = 5327.919754 C = 6569.161281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.148 3.852 3 C -0.166 4.166 4 N -0.590 5.590 5 C 0.236 3.764 6 C -0.537 4.537 7 H 0.061 0.939 8 C 0.066 3.934 9 N -0.891 5.891 10 Si 0.895 3.105 11 H -0.279 1.279 12 H -0.285 1.285 13 H -0.273 1.273 14 C 0.518 3.482 15 O -0.571 6.571 16 C -0.129 4.129 17 C -0.086 4.086 18 H 0.087 0.913 19 C -0.122 4.122 20 C -0.134 4.134 21 C 0.519 3.481 22 O -0.572 6.572 23 N -0.715 5.715 24 C 0.109 3.891 25 H 0.075 0.925 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.081 0.919 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.034 0.966 33 H 0.040 0.960 34 H 0.265 0.735 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.396 0.604 42 H 0.061 0.939 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.740 7.206 3.911 8.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.044 3.956 3 C -0.224 4.224 4 N -0.320 5.320 5 C 0.116 3.884 6 C -0.576 4.576 7 H 0.079 0.921 8 C -0.137 4.137 9 N -0.530 5.530 10 Si 0.722 3.278 11 H -0.205 1.205 12 H -0.210 1.210 13 H -0.198 1.198 14 C 0.307 3.693 15 O -0.454 6.454 16 C -0.169 4.169 17 C -0.105 4.105 18 H 0.106 0.894 19 C -0.159 4.159 20 C -0.173 4.173 21 C 0.307 3.693 22 O -0.453 6.453 23 N -0.365 5.365 24 C -0.015 4.015 25 H 0.093 0.907 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.099 0.901 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.109 0.891 36 H 0.127 0.873 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.231 0.769 42 H 0.079 0.921 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.010 7.626 4.417 8.870 hybrid contribution -0.374 -0.867 -0.408 1.029 sum -1.384 6.759 4.009 7.979 Atomic orbital electron populations 1.22163 0.95732 1.01976 1.02358 1.20815 0.94244 0.92200 0.88321 1.22189 1.00383 0.96945 1.02883 1.48319 1.51909 1.27480 1.04325 1.19477 0.90466 0.80019 0.98457 1.21495 0.93832 0.90710 1.51547 0.92083 1.24933 0.95060 0.99012 0.94730 1.69914 1.10384 1.23413 1.49242 0.86539 0.80689 0.82085 0.78437 1.20539 1.21048 1.19775 1.20377 0.80895 0.83145 0.84911 1.90512 1.38103 1.29913 1.86848 1.21643 1.02529 1.01320 0.91447 1.21206 1.01764 0.93446 0.94102 0.89424 1.21763 1.01335 1.00104 0.92737 1.21625 1.04048 0.91074 1.00589 1.20239 0.75398 0.91192 0.82496 1.90725 1.53065 1.65030 1.36445 1.45497 1.71159 1.11353 1.08492 1.21662 1.00393 0.94150 0.85264 0.90653 0.93240 0.92605 0.90084 0.93298 0.92685 0.90711 0.94826 0.94235 0.92493 0.89058 0.87310 0.89950 0.91021 0.88311 0.88263 0.76917 0.92121 0.88669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.18 37.15 0.34 -2.41 16 2 C 0.15 2.55 3.28 -67.93 -0.22 2.33 16 3 C -0.17 -2.48 9.15 37.16 0.34 -2.14 16 4 N -0.59 -11.15 2.41 -167.47 -0.40 -11.56 16 5 C 0.24 5.14 5.03 -5.19 -0.03 5.12 16 6 C -0.54 -13.11 9.39 -34.44 -0.32 -13.44 16 7 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 8 C 0.07 1.65 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -23.43 13.29 55.43 0.74 -22.69 16 10 Si 0.89 19.74 29.54 -169.99 -5.02 14.72 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 14 C 0.52 9.17 6.74 -10.99 -0.07 9.09 16 15 O -0.57 -10.52 10.42 5.55 0.06 -10.46 16 16 C -0.13 -1.95 3.76 -27.88 -0.10 -2.05 16 17 C -0.09 -1.10 1.89 -90.48 -0.17 -1.27 16 18 H 0.09 1.24 7.86 -51.93 -0.41 0.83 16 19 C -0.12 -1.33 5.33 -26.52 -0.14 -1.47 16 20 C -0.13 -1.49 6.03 -28.11 -0.17 -1.66 16 21 C 0.52 7.25 7.71 -11.87 -0.09 7.16 16 22 O -0.57 -10.06 17.78 5.56 0.10 -9.96 16 23 N -0.71 -8.87 5.45 -61.39 -0.33 -9.20 16 24 C 0.11 1.34 6.11 -4.48 -0.03 1.31 16 25 H 0.07 1.36 6.08 -51.93 -0.32 1.04 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.08 1.41 7.78 -51.93 -0.40 1.01 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 1.21 6.10 -51.93 -0.32 0.89 16 32 H 0.03 0.79 7.90 -51.93 -0.41 0.38 16 33 H 0.04 0.87 6.29 -51.93 -0.33 0.55 16 34 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 35 H 0.09 1.32 7.27 -51.93 -0.38 0.94 16 36 H 0.11 1.77 8.14 -51.93 -0.42 1.35 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 39 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.40 4.50 8.80 -40.82 -0.36 4.14 16 42 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 43 H 0.10 1.29 6.39 -51.93 -0.33 0.96 16 LS Contribution 341.22 15.07 5.14 5.14 Total: -1.00 -28.42 341.22 -7.51 -35.93 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -7.02 Total: 5.96 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -0.77 Total: 2.11 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: 0.00 Total: -43.45 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: 0.16 Total: -20.42 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.42 -7.51 -35.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598244744.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.853 kcal (2) G-P(sol) polarization free energy of solvation -28.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds