Wall clock time and date at job start Tue Mar 31 2020 06:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47299 * 2 1 4 4 N 1.46504 * 109.47104 * 120.00295 * 2 1 3 5 5 C 1.46500 * 119.99881 * 299.99526 * 4 2 1 6 6 C 1.50706 * 109.46949 * 270.00337 * 5 4 2 7 7 H 1.07995 * 120.00167 * 359.72205 * 6 5 4 8 8 C 1.37879 * 119.99394 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00338 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99424 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47474 * 90.00322 * 10 8 6 12 12 H 1.48507 * 109.46754 * 210.00056 * 10 8 6 13 13 H 1.48498 * 109.47278 * 329.99887 * 10 8 6 14 14 C 1.34773 * 119.99970 * 120.00324 * 4 2 1 15 15 O 1.21284 * 119.99889 * 179.97438 * 14 4 2 16 16 C 1.50702 * 120.00140 * 359.97438 * 14 4 2 17 17 C 1.52999 * 109.46891 * 180.02562 * 16 14 4 18 18 H 1.09003 * 109.60609 * 304.68108 * 17 16 14 19 19 C 1.53351 * 109.60205 * 184.18831 * 17 16 14 20 20 C 1.53058 * 108.43441 * 172.72873 * 19 17 16 21 21 C 1.50179 * 109.89453 * 48.89156 * 20 19 17 22 22 O 1.21276 * 118.24329 * 162.39053 * 21 20 19 23 23 N 1.33343 * 123.50621 * 342.40922 * 21 20 19 24 24 C 1.45755 * 124.11015 * 2.24970 * 23 21 20 25 25 H 1.09002 * 109.46620 * 299.99778 * 1 2 3 26 26 H 1.09002 * 109.47161 * 59.99886 * 1 2 3 27 27 H 1.08998 * 109.47127 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46875 * 239.99744 * 2 1 3 29 29 H 1.09000 * 109.47433 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47107 * 300.00147 * 3 2 1 31 31 H 1.09004 * 109.47366 * 60.00044 * 3 2 1 32 32 H 1.09000 * 109.47175 * 150.00363 * 5 4 2 33 33 H 1.09001 * 109.47297 * 29.99871 * 5 4 2 34 34 H 0.96996 * 119.99730 * 179.97438 * 9 8 6 35 35 H 1.08991 * 109.47090 * 300.00560 * 16 14 4 36 36 H 1.09001 * 109.46435 * 60.00829 * 16 14 4 37 37 H 1.08995 * 109.67289 * 292.44848 * 19 17 16 38 38 H 1.08997 * 109.67312 * 52.98292 * 19 17 16 39 39 H 1.08997 * 109.40252 * 288.75727 * 20 19 17 40 40 H 1.09009 * 109.32639 * 168.97342 * 20 19 17 41 41 H 0.97001 * 117.94683 * 182.22197 * 23 21 20 42 42 H 1.09000 * 109.30353 * 220.58640 * 24 23 21 43 43 H 1.09004 * 109.13460 * 101.10589 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.6645 -0.1902 2.5268 6 6 2.7033 0.8018 2.9829 7 1 3.5454 1.0326 2.3474 8 6 2.5812 1.4107 4.2139 9 7 1.5586 1.1256 4.9902 10 14 3.8685 2.6408 4.7791 11 1 3.4752 4.0047 4.3427 12 1 3.9705 2.6052 6.2602 13 1 5.1830 2.2904 4.1838 14 6 2.7932 -1.7864 1.0724 15 8 3.1979 -2.3579 2.0627 16 6 3.1569 -2.3015 -0.2963 17 6 4.0361 -3.5458 -0.1559 18 1 4.9051 -3.3121 0.4593 19 6 4.4940 -4.0114 -1.5434 20 6 5.5130 -5.1392 -1.3636 21 6 4.9793 -6.1616 -0.4017 22 8 5.4925 -7.2603 -0.3887 23 7 3.9710 -5.9260 0.4385 24 6 3.2325 -4.6708 0.4975 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6239 -1.0227 3.2292 33 1 0.6905 0.2974 2.4844 34 1 1.4730 1.5538 5.8563 35 1 2.2485 -2.5585 -0.8410 36 1 3.7018 -1.5308 -0.8415 37 1 3.6372 -4.3780 -2.1087 38 1 4.9567 -3.1801 -2.0753 39 1 6.4441 -4.7273 -0.9745 40 1 5.7013 -5.6124 -2.3274 41 1 3.7126 -6.6346 1.0485 42 1 3.0375 -4.4161 1.5393 43 1 2.2848 -4.7888 -0.0279 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598244745.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:28 Heat of formation + Delta-G solvation = -92.111353 kcal Electronic energy + Delta-G solvation = -23151.312388 eV Core-core repulsion = 19809.650930 eV Total energy + Delta-G solvation = -3341.661458 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.41425 -39.25483 -36.86670 -35.82995 -33.43433 -32.86454 -31.33134 -30.88783 -28.05374 -26.81753 -26.10724 -24.48906 -22.96400 -21.85917 -21.17904 -19.13361 -18.06911 -17.11860 -16.76972 -16.49974 -15.96724 -15.64885 -15.09028 -14.89504 -14.44809 -14.04786 -13.94177 -13.57749 -13.44501 -13.13893 -12.91297 -12.79464 -12.36854 -11.94322 -11.75872 -11.65154 -11.54214 -11.38010 -11.12677 -11.08503 -10.92616 -10.87706 -10.84374 -10.57042 -10.41116 -10.04952 -9.76428 -9.57521 -9.08421 -8.84086 -8.45055 -7.69678 -6.06624 -4.09940 2.64499 3.27031 3.31452 3.33815 3.35318 3.40042 3.81185 4.41153 4.49358 4.60050 4.63156 4.71029 5.06372 5.17956 5.24373 5.27778 5.35669 5.43059 5.48970 5.56676 5.59612 5.60634 5.66198 5.71015 5.76889 5.95917 6.09763 6.10836 6.22470 6.26993 6.31614 6.54393 6.76840 6.91174 7.06879 7.35646 7.43087 7.52552 7.90093 8.20946 8.22073 8.39856 8.87836 9.04831 9.54455 11.01496 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019590 B = 0.004410 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.931781 B = 6347.460093 C = 6991.030121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.132 3.868 3 C -0.157 4.157 4 N -0.591 5.591 5 C 0.246 3.754 6 C -0.519 4.519 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.895 5.895 10 Si 0.894 3.106 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.502 3.498 15 O -0.542 6.542 16 C -0.135 4.135 17 C -0.087 4.087 18 H 0.090 0.910 19 C -0.120 4.120 20 C -0.134 4.134 21 C 0.518 3.482 22 O -0.571 6.571 23 N -0.714 5.714 24 C 0.107 3.893 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.080 0.920 32 H 0.041 0.959 33 H 0.033 0.967 34 H 0.262 0.738 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.398 0.602 42 H 0.103 0.897 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.035 -5.081 -15.172 16.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.028 3.972 3 C -0.215 4.215 4 N -0.323 5.323 5 C 0.127 3.873 6 C -0.558 4.558 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.722 3.278 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.200 1.200 14 C 0.289 3.711 15 O -0.420 6.420 16 C -0.175 4.175 17 C -0.106 4.106 18 H 0.108 0.892 19 C -0.158 4.158 20 C -0.174 4.174 21 C 0.305 3.695 22 O -0.451 6.451 23 N -0.364 5.364 24 C -0.017 4.017 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.072 0.928 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.233 0.767 42 H 0.121 0.879 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.398 -5.692 -14.600 15.675 hybrid contribution 0.452 0.747 0.659 1.094 sum 0.850 -4.945 -13.941 14.817 Atomic orbital electron populations 1.22159 0.95614 1.01758 1.02488 1.21007 0.94087 0.94166 0.87949 1.22141 1.01334 0.95735 1.02331 1.48352 1.48925 1.26368 1.08653 1.19235 0.95873 0.94977 0.77257 1.21424 1.08768 1.23443 1.02145 0.92421 1.24919 0.95729 0.97116 0.96356 1.69924 1.29566 1.43243 1.10710 0.86564 0.82026 0.81276 0.77950 1.20701 1.21177 1.19971 1.20317 0.79221 0.81073 0.90526 1.90640 1.53484 1.58104 1.39779 1.21729 1.00924 0.97783 0.97093 1.21196 0.99524 0.93683 0.96226 0.89156 1.21762 0.98890 0.98030 0.97083 1.21618 1.00392 0.95711 0.99645 1.20198 0.79380 0.88768 0.81155 1.90734 1.58651 1.24884 1.70854 1.45507 1.34686 1.17605 1.38639 1.21721 0.93575 0.82170 1.04240 0.91311 0.92286 0.92940 0.90668 0.92761 0.93290 0.90066 0.94093 0.94864 0.92790 0.89312 0.88804 0.91108 0.90285 0.88176 0.88312 0.76682 0.87850 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 9.17 37.16 0.34 -1.81 16 2 C 0.13 1.92 3.17 -67.93 -0.22 1.71 16 3 C -0.16 -2.38 8.48 37.16 0.32 -2.07 16 4 N -0.59 -11.20 2.39 -167.46 -0.40 -11.60 16 5 C 0.25 5.97 4.59 -5.19 -0.02 5.94 16 6 C -0.52 -13.81 7.83 -34.44 -0.27 -14.08 16 7 H 0.06 1.54 7.64 -52.49 -0.40 1.14 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 9 N -0.90 -25.78 13.29 55.43 0.74 -25.05 16 10 Si 0.89 21.29 29.54 -169.99 -5.02 16.26 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 14 C 0.50 9.07 7.43 -10.99 -0.08 8.99 16 15 O -0.54 -11.99 13.59 5.55 0.08 -11.91 16 16 C -0.13 -1.61 3.49 -27.88 -0.10 -1.70 16 17 C -0.09 -1.00 1.90 -90.48 -0.17 -1.17 16 18 H 0.09 1.23 7.95 -51.93 -0.41 0.82 16 19 C -0.12 -1.04 5.33 -26.52 -0.14 -1.18 16 20 C -0.13 -1.33 6.03 -28.10 -0.17 -1.50 16 21 C 0.52 6.95 7.71 -11.87 -0.09 6.86 16 22 O -0.57 -9.83 17.78 5.56 0.10 -9.73 16 23 N -0.71 -8.78 5.45 -61.39 -0.33 -9.12 16 24 C 0.11 1.29 6.10 -4.48 -0.03 1.26 16 25 H 0.07 1.07 6.66 -51.93 -0.35 0.73 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.08 0.86 5.77 -51.93 -0.30 0.56 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.08 1.49 6.92 -51.93 -0.36 1.13 16 32 H 0.04 1.15 7.42 -51.93 -0.39 0.76 16 33 H 0.03 0.83 6.43 -51.93 -0.33 0.49 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.09 0.86 7.76 -51.93 -0.40 0.45 16 36 H 0.09 0.98 7.79 -51.93 -0.40 0.58 16 37 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.10 0.85 8.14 -51.92 -0.42 0.43 16 41 H 0.40 4.62 8.80 -40.82 -0.36 4.27 16 42 H 0.10 1.53 6.17 -51.93 -0.32 1.21 16 43 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 LS Contribution 340.88 15.07 5.14 5.14 Total: -1.00 -33.02 340.88 -7.40 -40.42 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -6.96 Total: 2.77 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -0.73 Total: 2.82 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: 0.00 Total: -45.77 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: 0.17 Total: -21.64 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.02 -7.40 -40.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598244745.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.696 kcal (2) G-P(sol) polarization free energy of solvation -33.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds