Wall clock time and date at job start Tue Mar 31 2020 05:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47457 * 2 1 4 4 C 1.50700 * 109.46990 * 240.00182 * 2 1 3 5 5 H 1.08003 * 119.99974 * 240.00092 * 4 2 1 6 6 C 1.37872 * 120.00316 * 59.99573 * 4 2 1 7 7 N 1.31512 * 119.99944 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00173 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47118 * 90.00349 * 8 6 4 10 10 H 1.48503 * 109.47244 * 210.00158 * 8 6 4 11 11 H 1.48500 * 109.47492 * 330.00553 * 8 6 4 12 12 C 1.53004 * 109.47021 * 120.00129 * 2 1 3 13 13 N 1.46497 * 109.46927 * 299.99750 * 12 2 1 14 14 C 1.34779 * 119.99620 * 180.02562 * 13 12 2 15 15 O 1.21579 * 120.00041 * 0.02562 * 14 13 12 16 16 N 1.34778 * 119.99637 * 179.97438 * 14 13 12 17 17 C 1.51694 * 127.61626 * 0.27692 * 16 14 13 18 18 C 1.54385 * 102.89617 * 219.46004 * 17 16 14 19 19 H 1.08997 * 117.61570 * 116.37998 * 18 17 16 20 20 C 1.53004 * 118.12185 * 271.95002 * 18 17 16 21 21 C 1.53000 * 60.49677 * 93.16147 * 20 18 17 22 22 C 1.53000 * 119.53956 * 111.73999 * 21 20 18 23 23 O 1.42905 * 109.46887 * 109.77017 * 22 21 20 24 24 C 1.48151 * 127.83564 * 179.97438 * 16 14 13 25 25 H 1.09004 * 109.46929 * 300.00331 * 1 2 3 26 26 H 1.08998 * 109.46796 * 59.99742 * 1 2 3 27 27 H 1.08991 * 109.47212 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47223 * 180.02562 * 3 2 1 29 29 H 1.09008 * 109.46710 * 300.00341 * 3 2 1 30 30 H 1.08996 * 109.47079 * 59.99758 * 3 2 1 31 31 H 0.96999 * 120.00402 * 179.97438 * 7 6 4 32 32 H 1.09006 * 109.46680 * 180.02562 * 12 2 1 33 33 H 1.08998 * 109.46960 * 60.00106 * 12 2 1 34 34 H 0.96998 * 120.00150 * 0.02562 * 13 12 2 35 35 H 1.09006 * 111.96185 * 100.90059 * 17 16 14 36 36 H 1.08997 * 110.49107 * 337.32873 * 17 16 14 37 37 H 1.09002 * 117.44414 * 200.79009 * 20 18 17 38 38 H 1.09003 * 117.44322 * 345.53871 * 20 18 17 39 39 H 1.08996 * 109.47188 * 229.76967 * 22 21 20 40 40 H 1.09000 * 109.47141 * 349.77608 * 22 21 20 41 41 H 0.96699 * 113.99802 * 179.97438 * 23 22 21 42 42 H 1.08999 * 110.40580 * 21.63658 * 24 16 14 43 43 H 1.08993 * 110.50688 * 259.24971 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.3426 -2.1617 -4.4118 10 1 2.4864 -0.1414 -5.1123 11 1 3.6292 -1.7585 -3.7123 12 6 2.0400 -0.7213 1.2493 13 7 1.5517 -0.0307 2.4454 14 6 1.8778 -0.4909 3.6695 15 8 2.5775 -1.4789 3.7810 16 7 1.4289 0.1448 4.7699 17 6 0.5493 1.3791 4.8322 18 6 1.1590 2.1780 6.0041 19 1 1.5938 3.1519 5.7795 20 6 0.6501 1.8869 7.4174 21 6 1.8850 1.1503 6.8945 22 6 3.2547 1.4427 7.5104 23 8 3.6854 0.3128 8.2721 24 6 1.6776 -0.2068 6.1875 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9563 0.8899 31 1 0.7094 1.1617 -3.4844 32 1 3.1301 -0.7209 1.2494 33 1 1.6767 -1.7489 1.2492 34 1 0.9938 0.7578 2.3564 35 1 -0.4904 1.1285 5.0431 36 1 0.6235 1.9477 3.9052 37 1 0.8064 2.6542 8.1756 38 1 -0.2735 1.3155 7.5110 39 1 3.9748 1.6418 6.7168 40 1 3.1817 2.3135 8.1618 41 1 4.5488 0.4277 8.6921 42 1 2.5733 -0.8218 6.2750 43 1 0.8174 -0.7272 6.6083 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673508300.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:14 Heat of formation + Delta-G solvation = -39.782436 kcal Electronic energy + Delta-G solvation = -22885.700794 eV Core-core repulsion = 19546.308489 eV Total energy + Delta-G solvation = -3339.392306 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.43395 -38.70191 -36.61040 -36.23655 -33.53633 -32.99430 -30.74387 -29.07159 -26.61085 -26.18463 -25.70426 -25.37060 -24.12076 -21.41112 -19.79114 -19.36977 -18.77397 -17.86465 -17.31401 -15.99703 -15.68622 -15.58260 -15.31149 -14.87170 -14.66981 -13.97709 -13.65238 -13.56377 -13.22099 -12.88598 -12.72876 -12.38375 -12.19241 -12.10778 -11.81879 -11.41675 -11.35996 -11.16941 -10.84789 -10.67293 -10.61432 -10.45298 -10.35972 -10.17824 -9.90653 -9.61741 -9.60677 -9.27676 -8.76829 -8.70807 -8.38484 -8.10518 -6.00191 -4.09906 2.86213 3.13813 3.30011 3.36806 3.41440 3.62352 3.88305 4.30455 4.35775 4.43744 4.52846 4.64505 4.84445 4.87434 5.07445 5.26648 5.30626 5.40955 5.43071 5.52116 5.73210 5.76598 5.87609 5.93690 6.13952 6.33303 6.39951 6.53549 6.83328 6.84675 6.96004 7.05698 7.14078 7.37473 7.38321 7.46695 7.58028 7.71863 8.03151 8.14631 8.40377 8.47269 8.90005 9.09563 9.55722 11.01307 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034467 B = 0.003531 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.184402 B = 7927.143747 C = 8264.473722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 C -0.129 4.129 4 C -0.504 4.504 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.150 3.850 13 N -0.731 5.731 14 C 0.721 3.279 15 O -0.596 6.596 16 N -0.651 5.651 17 C 0.129 3.871 18 C -0.164 4.164 19 H 0.121 0.879 20 C -0.133 4.133 21 C -0.147 4.147 22 C 0.126 3.874 23 O -0.566 6.566 24 C 0.168 3.832 25 H 0.004 0.996 26 H 0.085 0.915 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.085 0.915 30 H 0.004 0.996 31 H 0.259 0.741 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.392 0.608 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.051 0.949 40 H 0.049 0.951 41 H 0.380 0.620 42 H 0.092 0.908 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.781 6.557 19.043 20.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.186 4.186 4 C -0.543 4.543 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.027 3.973 13 N -0.386 5.386 14 C 0.424 3.576 15 O -0.475 6.475 16 N -0.392 5.392 17 C 0.007 3.993 18 C -0.183 4.183 19 H 0.139 0.861 20 C -0.170 4.170 21 C -0.149 4.149 22 C 0.048 3.952 23 O -0.372 6.372 24 C 0.045 3.955 25 H 0.023 0.977 26 H 0.104 0.896 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.104 0.896 30 H 0.023 0.977 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.228 0.772 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.122 0.878 38 H 0.117 0.883 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.227 0.773 42 H 0.111 0.889 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.847 5.603 18.581 19.426 hybrid contribution 0.578 0.353 -0.707 0.979 sum -0.269 5.956 17.874 18.842 Atomic orbital electron populations 1.21812 0.97773 0.99163 0.99919 1.18368 0.92804 0.92774 0.90546 1.21808 0.98562 0.98364 0.99893 1.20992 1.31393 1.12067 0.89854 0.92391 1.24874 0.94891 0.94922 0.98829 1.69804 1.36810 1.22755 1.23171 0.86567 0.79345 0.79375 0.82560 1.20721 1.21300 1.19889 1.21601 0.97879 0.95457 0.82357 1.45507 1.55715 1.33018 1.04332 1.15517 0.80069 0.82288 0.79760 1.90889 1.43409 1.27679 1.85489 1.49215 1.54256 1.30756 1.04957 1.22408 0.93985 0.85346 0.97594 1.23715 1.04212 0.99342 0.91044 0.86064 1.23193 0.97061 1.01574 0.95176 1.22672 0.93824 0.95253 1.03107 1.21346 0.92748 0.87666 0.93476 1.86489 1.40599 1.40552 1.69543 1.21263 1.02284 0.93371 0.78624 0.97657 0.89635 0.95443 0.95466 0.89639 0.97693 0.93051 0.92984 0.92937 0.77237 0.90233 0.89769 0.87843 0.88335 0.93086 0.93323 0.77285 0.88937 0.91467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 2 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 3 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 4 C -0.50 -13.40 8.01 -34.44 -0.28 -13.68 16 5 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.65 16 7 N -0.89 -23.73 9.35 55.43 0.52 -23.21 16 8 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 12 C 0.15 3.35 4.50 -4.04 -0.02 3.33 16 13 N -0.73 -14.07 4.94 -65.22 -0.32 -14.39 16 14 C 0.72 14.17 8.58 -86.91 -0.75 13.42 16 15 O -0.60 -14.06 16.61 5.30 0.09 -13.97 16 16 N -0.65 -9.93 3.39 -171.95 -0.58 -10.51 16 17 C 0.13 1.43 6.95 -0.37 0.00 1.43 16 18 C -0.16 -1.50 6.93 -89.29 -0.62 -2.12 16 19 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 20 C -0.13 -1.03 9.81 -26.73 -0.26 -1.29 16 21 C -0.15 -1.52 2.74 -153.16 -0.42 -1.94 16 22 C 0.13 1.16 7.34 37.16 0.27 1.43 16 23 O -0.57 -5.56 13.06 -35.23 -0.46 -6.02 16 24 C 0.17 2.28 6.51 -2.39 -0.02 2.26 16 25 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 26 H 0.08 2.15 6.07 -51.93 -0.32 1.83 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.08 2.14 6.07 -51.92 -0.32 1.83 16 30 H 0.00 0.08 6.86 -51.93 -0.36 -0.27 16 31 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 32 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.39 6.81 4.60 -40.82 -0.19 6.62 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.91 6.95 -51.93 -0.36 0.55 16 37 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.05 0.34 8.04 -51.93 -0.42 -0.08 16 41 H 0.38 1.94 9.12 45.56 0.42 2.35 16 42 H 0.09 1.48 7.40 -51.93 -0.38 1.09 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 340.84 15.07 5.14 5.14 Total: -1.00 -31.69 340.84 -8.35 -40.03 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -6.05 Total: 6.62 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -1.66 Total: 0.45 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: -0.39 Total: -48.11 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.37 Total: -19.99 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.69 -8.35 -40.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673508300.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.249 kcal (2) G-P(sol) polarization free energy of solvation -31.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds