Wall clock time and date at job start Tue Mar 31 2020 05:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47457 * 2 1 4 4 C 1.50700 * 109.46990 * 240.00182 * 2 1 3 5 5 H 1.08003 * 119.99974 * 240.00092 * 4 2 1 6 6 C 1.37872 * 120.00316 * 59.99573 * 4 2 1 7 7 N 1.31512 * 119.99944 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00173 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47118 * 90.00349 * 8 6 4 10 10 H 1.48503 * 109.47244 * 210.00158 * 8 6 4 11 11 H 1.48500 * 109.47492 * 330.00553 * 8 6 4 12 12 C 1.53004 * 109.47021 * 120.00129 * 2 1 3 13 13 N 1.46497 * 109.46927 * 299.99750 * 12 2 1 14 14 C 1.34779 * 119.99620 * 180.02562 * 13 12 2 15 15 O 1.21579 * 120.00041 * 0.02562 * 14 13 12 16 16 N 1.34778 * 119.99637 * 179.97438 * 14 13 12 17 17 C 1.51694 * 127.61626 * 0.27692 * 16 14 13 18 18 C 1.54385 * 102.89617 * 219.46004 * 17 16 14 19 19 H 1.08997 * 117.61570 * 116.37998 * 18 17 16 20 20 C 1.53004 * 118.12185 * 271.95002 * 18 17 16 21 21 C 1.53000 * 60.49677 * 93.16147 * 20 18 17 22 22 C 1.53000 * 119.53956 * 111.73999 * 21 20 18 23 23 O 1.42905 * 109.46887 * 109.77017 * 22 21 20 24 24 C 1.48151 * 127.83564 * 179.97438 * 16 14 13 25 25 H 1.09004 * 109.46929 * 300.00331 * 1 2 3 26 26 H 1.08998 * 109.46796 * 59.99742 * 1 2 3 27 27 H 1.08991 * 109.47212 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47223 * 180.02562 * 3 2 1 29 29 H 1.09008 * 109.46710 * 300.00341 * 3 2 1 30 30 H 1.08996 * 109.47079 * 59.99758 * 3 2 1 31 31 H 0.96999 * 120.00402 * 179.97438 * 7 6 4 32 32 H 1.09006 * 109.46680 * 180.02562 * 12 2 1 33 33 H 1.08998 * 109.46960 * 60.00106 * 12 2 1 34 34 H 0.96998 * 120.00150 * 0.02562 * 13 12 2 35 35 H 1.09006 * 111.96185 * 100.90059 * 17 16 14 36 36 H 1.08997 * 110.49107 * 337.32873 * 17 16 14 37 37 H 1.09002 * 117.44414 * 200.79009 * 20 18 17 38 38 H 1.09003 * 117.44322 * 345.53871 * 20 18 17 39 39 H 1.08996 * 109.47188 * 229.76967 * 22 21 20 40 40 H 1.09000 * 109.47141 * 349.77608 * 22 21 20 41 41 H 0.96699 * 113.99802 * 179.97438 * 23 22 21 42 42 H 1.08999 * 110.40580 * 21.63658 * 24 16 14 43 43 H 1.08993 * 110.50688 * 259.24971 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.3426 -2.1617 -4.4118 10 1 2.4864 -0.1414 -5.1123 11 1 3.6292 -1.7585 -3.7123 12 6 2.0400 -0.7213 1.2493 13 7 1.5517 -0.0307 2.4454 14 6 1.8778 -0.4909 3.6695 15 8 2.5775 -1.4789 3.7810 16 7 1.4289 0.1448 4.7699 17 6 0.5493 1.3791 4.8322 18 6 1.1590 2.1780 6.0041 19 1 1.5938 3.1519 5.7795 20 6 0.6501 1.8869 7.4174 21 6 1.8850 1.1503 6.8945 22 6 3.2547 1.4427 7.5104 23 8 3.6854 0.3128 8.2721 24 6 1.6776 -0.2068 6.1875 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9563 0.8899 31 1 0.7094 1.1617 -3.4844 32 1 3.1301 -0.7209 1.2494 33 1 1.6767 -1.7489 1.2492 34 1 0.9938 0.7578 2.3564 35 1 -0.4904 1.1285 5.0431 36 1 0.6235 1.9477 3.9052 37 1 0.8064 2.6542 8.1756 38 1 -0.2735 1.3155 7.5110 39 1 3.9748 1.6418 6.7168 40 1 3.1817 2.3135 8.1618 41 1 4.5488 0.4277 8.6921 42 1 2.5733 -0.8218 6.2750 43 1 0.8174 -0.7272 6.6083 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673508300.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:13 Heat of formation + Delta-G solvation = -62.022356 kcal Electronic energy + Delta-G solvation = -22886.665190 eV Core-core repulsion = 19546.308489 eV Total energy + Delta-G solvation = -3340.356701 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.53061 -40.02891 -38.12074 -37.28570 -35.09409 -34.40795 -32.58711 -29.95279 -27.98884 -27.57546 -27.29732 -26.94843 -25.72464 -22.21195 -21.21650 -20.63659 -20.19489 -19.14418 -18.11550 -17.81454 -17.00186 -16.83882 -16.68086 -16.28856 -15.84613 -15.25506 -15.09260 -14.96004 -14.58621 -14.35229 -14.03429 -13.90512 -13.30755 -13.21981 -13.18218 -13.06428 -12.69488 -12.59931 -12.57232 -12.26270 -12.23234 -12.13453 -11.52305 -11.49938 -11.30898 -11.20831 -10.97374 -10.71941 -10.51795 -10.40560 -10.19337 -9.54351 -8.02428 -6.18012 1.42993 1.45333 1.52404 1.57493 2.12843 2.42058 2.46381 3.05730 3.21061 3.21208 3.55765 3.73327 3.83924 4.12075 4.15347 4.33886 4.41903 4.50240 4.52196 4.61515 4.68998 4.72069 4.83433 4.87739 4.91342 4.97749 5.04162 5.05268 5.08963 5.17666 5.18494 5.22857 5.36426 5.59825 5.66255 5.67116 6.06157 6.13938 6.20661 6.43333 6.85385 6.90748 6.99024 7.49522 7.57129 8.96758 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034467 B = 0.003531 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.184402 B = 7927.143747 C = 8264.473722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.053 3.947 3 C -0.117 4.117 4 C -0.530 4.530 5 H 0.043 0.957 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.946 3.054 9 H -0.279 1.279 10 H -0.281 1.281 11 H -0.277 1.277 12 C 0.167 3.833 13 N -0.722 5.722 14 C 0.716 3.284 15 O -0.645 6.645 16 N -0.650 5.650 17 C 0.121 3.879 18 C -0.158 4.158 19 H 0.139 0.861 20 C -0.105 4.105 21 C -0.168 4.168 22 C 0.126 3.874 23 O -0.589 6.589 24 C 0.163 3.837 25 H 0.034 0.966 26 H 0.065 0.935 27 H 0.016 0.984 28 H 0.016 0.984 29 H 0.065 0.935 30 H 0.034 0.966 31 H 0.261 0.739 32 H 0.033 0.967 33 H 0.034 0.966 34 H 0.404 0.596 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.130 0.870 38 H 0.106 0.894 39 H 0.037 0.963 40 H 0.079 0.921 41 H 0.398 0.602 42 H 0.058 0.942 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.857 8.514 20.592 22.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.052 3.948 3 C -0.175 4.175 4 C -0.569 4.569 5 H 0.062 0.938 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.773 3.227 9 H -0.205 1.205 10 H -0.206 1.206 11 H -0.202 1.202 12 C 0.043 3.957 13 N -0.378 5.378 14 C 0.418 3.582 15 O -0.528 6.528 16 N -0.389 5.389 17 C 0.001 3.999 18 C -0.177 4.177 19 H 0.156 0.844 20 C -0.141 4.141 21 C -0.169 4.169 22 C 0.048 3.952 23 O -0.398 6.398 24 C 0.040 3.960 25 H 0.053 0.947 26 H 0.084 0.916 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.083 0.917 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.241 0.759 35 H 0.118 0.882 36 H 0.107 0.893 37 H 0.148 0.852 38 H 0.124 0.876 39 H 0.055 0.945 40 H 0.097 0.903 41 H 0.248 0.752 42 H 0.077 0.923 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.950 7.616 20.176 21.654 hybrid contribution 0.906 -0.261 -1.110 1.456 sum -1.044 7.356 19.066 20.463 Atomic orbital electron populations 1.21646 0.96979 0.98614 1.00322 1.18363 0.93358 0.93105 0.89996 1.21638 0.97842 0.97716 1.00298 1.21254 1.31851 1.12213 0.91561 0.93848 1.25432 0.95102 0.95583 1.00884 1.69895 1.36943 1.23172 1.23660 0.85748 0.78626 0.78512 0.79849 1.20475 1.20646 1.20196 1.21164 0.96605 0.94708 0.83254 1.45181 1.55890 1.33154 1.03551 1.15663 0.79874 0.82045 0.80608 1.90846 1.45608 1.29994 1.86342 1.49284 1.53821 1.31447 1.04372 1.22746 0.94353 0.83780 0.99045 1.23764 1.03880 0.99160 0.90904 0.84353 1.23334 0.95604 1.00777 0.94433 1.22673 0.95948 0.93479 1.04821 1.21403 0.91807 0.88394 0.93600 1.86445 1.42107 1.41426 1.69789 1.21349 1.01101 0.95404 0.78129 0.94668 0.91645 0.96430 0.96430 0.91660 0.94687 0.92950 0.94855 0.94778 0.75896 0.88227 0.89276 0.85175 0.87596 0.94512 0.90281 0.75237 0.92328 0.90623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.33 8.08 71.98 0.58 -4.75 16 2 C 0.05 2.50 0.50 -52.92 -0.03 2.47 16 3 C -0.12 -5.28 8.08 71.98 0.58 -4.70 16 4 C -0.53 -28.64 8.01 25.60 0.21 -28.43 16 5 H 0.04 2.41 7.74 -2.91 -0.02 2.38 16 6 C 0.03 1.59 5.15 84.65 0.44 2.02 16 7 N -0.90 -47.93 9.35 21.44 0.20 -47.73 16 8 Si 0.95 43.01 29.54 68.60 2.03 45.03 16 9 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 C 0.17 7.61 4.50 86.38 0.39 8.00 16 13 N -0.72 -27.55 4.94 -478.53 -2.36 -29.91 16 14 C 0.72 28.37 8.58 179.05 1.54 29.91 16 15 O -0.65 -31.62 16.61 -3.97 -0.07 -31.68 16 16 N -0.65 -19.31 3.39 -816.18 -2.76 -22.07 16 17 C 0.12 2.35 6.95 85.82 0.60 2.94 16 18 C -0.16 -2.32 6.93 -9.93 -0.07 -2.39 16 19 H 0.14 1.62 8.14 -2.39 -0.02 1.60 16 20 C -0.10 -1.16 9.81 30.60 0.30 -0.86 16 21 C -0.17 -3.08 2.74 -51.31 -0.14 -3.22 16 22 C 0.13 2.07 7.34 71.98 0.53 2.60 16 23 O -0.59 -11.01 13.06 -148.98 -1.95 -12.95 16 24 C 0.16 4.34 6.51 86.54 0.56 4.91 16 25 H 0.03 1.33 6.86 -2.38 -0.02 1.32 16 26 H 0.06 3.25 6.07 -2.39 -0.01 3.23 16 27 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 3.24 6.07 -2.38 -0.01 3.22 16 30 H 0.03 1.32 6.86 -2.39 -0.02 1.30 16 31 H 0.26 13.37 8.31 -92.71 -0.77 12.60 16 32 H 0.03 1.62 8.14 -2.38 -0.02 1.60 16 33 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.40 13.30 4.60 -92.71 -0.43 12.88 16 35 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.09 1.64 6.95 -2.39 -0.02 1.63 16 37 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.08 0.82 8.04 -2.39 -0.02 0.80 16 41 H 0.40 3.68 9.12 -74.06 -0.68 3.00 16 42 H 0.06 1.95 7.40 -2.39 -0.02 1.93 16 43 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -70.19 340.84 0.49 -69.70 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: -0.08 Total: 21.12 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: 5.48 Total: 8.49 kcal Atomic # 7 Polarization: -94.79 SS G_CDS: -4.93 Total: -99.71 kcal Atomic # 8 Polarization: -42.62 SS G_CDS: -2.01 Total: -44.64 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -70.19 0.49 -69.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673508300.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.681 kcal (2) G-P(sol) polarization free energy of solvation -70.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds