Wall clock time and date at job start Tue Mar 31 2020 05:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47620 * 2 1 4 4 C 1.50704 * 109.47096 * 120.00281 * 2 1 3 5 5 H 1.07999 * 120.00302 * 119.91321 * 4 2 1 6 6 C 1.37874 * 119.99883 * 299.91284 * 4 2 1 7 7 N 1.31518 * 119.99962 * 1.15038 * 6 4 2 8 8 Si 1.86798 * 120.00060 * 181.42985 * 6 4 2 9 9 H 1.48498 * 109.47116 * 269.72356 * 8 6 4 10 10 H 1.48500 * 109.47104 * 29.72326 * 8 6 4 11 11 H 1.48503 * 109.47236 * 149.71879 * 8 6 4 12 12 C 1.53002 * 109.46893 * 239.99987 * 2 1 3 13 13 N 1.46501 * 109.47344 * 60.00071 * 12 2 1 14 14 C 1.34770 * 119.99965 * 179.97438 * 13 12 2 15 15 O 1.21587 * 120.00165 * 0.02562 * 14 13 12 16 16 N 1.34782 * 119.99589 * 179.97438 * 14 13 12 17 17 C 1.48151 * 127.83546 * 179.97438 * 16 14 13 18 18 C 1.54386 * 104.61644 * 219.59055 * 17 16 14 19 19 H 1.09000 * 117.61435 * 115.21992 * 18 17 16 20 20 C 1.53001 * 118.11990 * 270.79348 * 18 17 16 21 21 H 1.08993 * 117.44368 * 343.93740 * 20 18 17 22 22 C 1.53005 * 117.43905 * 199.19210 * 20 18 17 23 23 O 1.42902 * 109.46620 * 174.99912 * 22 20 18 24 24 C 1.54287 * 104.96004 * 336.13337 * 18 17 16 25 25 H 1.09005 * 121.81458 * 137.82335 * 24 18 17 26 26 C 1.48138 * 127.83910 * 359.68843 * 16 14 13 27 27 H 1.09003 * 109.46972 * 292.68170 * 1 2 3 28 28 H 1.08997 * 109.46954 * 52.67386 * 1 2 3 29 29 H 1.08994 * 109.47555 * 172.68023 * 1 2 3 30 30 H 1.08998 * 109.47429 * 187.43373 * 3 2 1 31 31 H 1.09000 * 109.47033 * 307.43314 * 3 2 1 32 32 H 1.08998 * 109.47215 * 67.43132 * 3 2 1 33 33 H 0.97002 * 120.00083 * 357.45897 * 7 6 4 34 34 H 1.09007 * 109.47128 * 180.02562 * 12 2 1 35 35 H 1.09004 * 109.46967 * 299.99935 * 12 2 1 36 36 H 0.96999 * 119.99665 * 0.02562 * 13 12 2 37 37 H 1.09001 * 110.40651 * 338.37350 * 17 16 14 38 38 H 1.09000 * 110.40156 * 100.68546 * 17 16 14 39 39 H 1.08999 * 109.47287 * 295.00107 * 22 20 18 40 40 H 1.08998 * 109.47273 * 55.00139 * 22 20 18 41 41 H 0.96702 * 113.99490 * 180.02562 * 23 22 20 42 42 H 1.09001 * 110.40381 * 259.19458 * 26 16 14 43 43 H 1.08997 * 110.40833 * 21.62127 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6521 -1.5894 1.1314 6 6 1.7008 -0.2384 2.4827 7 7 0.9275 0.8185 2.6035 8 14 2.3561 -1.0954 4.0077 9 1 1.4010 -2.1506 4.4315 10 1 3.6718 -1.7124 3.7018 11 1 2.5166 -0.1044 5.1020 12 6 2.0400 -0.7213 -1.2493 13 7 1.5516 -0.0307 -2.4455 14 6 1.8776 -0.4909 -3.6695 15 8 2.5766 -1.4795 -3.7811 16 7 1.4279 0.1442 -4.7699 17 6 1.6773 -0.2068 -6.1875 18 6 1.8827 1.1501 -6.8946 19 1 2.8647 1.3537 -7.3217 20 6 0.6521 1.8628 -7.4589 21 1 -0.2582 1.2752 -7.5780 22 6 0.8858 2.9388 -8.5213 23 8 -0.3729 3.4067 -9.0101 24 6 1.1541 2.1778 -6.0038 25 1 1.5870 3.1526 -5.7791 26 6 0.5674 1.3482 -4.8364 27 1 -0.3633 0.3963 0.9482 28 1 -0.3633 0.6231 -0.8172 29 1 -0.3634 -1.0192 -0.1309 30 1 3.1220 1.4452 -0.1330 31 1 1.5724 1.9932 -0.8160 32 1 1.7894 1.9165 0.9489 33 1 0.6205 1.2879 1.8121 34 1 3.1300 -0.7217 -1.2491 35 1 1.6766 -1.7490 -1.2492 36 1 0.9943 0.7582 -2.3564 37 1 2.5738 -0.8206 -6.2750 38 1 0.8174 -0.7295 -6.6064 39 1 1.4366 3.7701 -8.0815 40 1 1.4614 2.5169 -9.3452 41 1 -0.3011 4.0919 -9.6888 42 1 -0.4642 1.0668 -5.0480 43 1 0.6256 1.9090 -3.9036 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001681879145.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:17 Heat of formation + Delta-G solvation = -36.113005 kcal Electronic energy + Delta-G solvation = -22576.828456 eV Core-core repulsion = 19237.595268 eV Total energy + Delta-G solvation = -3339.233187 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.48337 -38.77311 -37.06172 -36.61635 -33.80115 -33.33037 -30.51966 -28.61597 -28.07141 -26.04823 -25.94949 -24.82494 -23.53663 -21.01924 -20.44872 -19.87054 -18.90893 -18.17837 -17.73356 -16.59598 -15.78404 -15.70119 -15.47627 -15.02739 -14.17707 -14.09503 -13.77489 -13.73319 -13.37441 -12.96977 -12.71001 -12.68006 -12.55308 -12.25623 -11.73300 -11.53921 -11.51217 -11.26902 -10.92756 -10.79593 -10.62042 -10.60907 -10.45210 -10.10909 -10.01523 -9.88548 -9.70536 -9.50541 -8.82713 -8.44985 -8.33277 -8.23960 -6.25970 -4.10783 2.77421 3.04385 3.41671 3.44021 3.47018 3.62711 3.69918 4.20375 4.29694 4.47464 4.54231 4.73674 4.79144 4.83641 4.94309 5.03407 5.12915 5.25723 5.33376 5.46889 5.63854 5.71466 5.80329 5.88638 5.95825 6.16135 6.20088 6.25956 6.56790 6.63057 6.70819 6.81072 6.93756 7.07627 7.12244 7.19872 7.33265 7.50597 7.66825 8.19298 8.32518 8.40529 8.83710 8.94649 9.60042 11.00186 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036382 B = 0.003218 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.435857 B = 8697.853152 C = 9173.034313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.041 3.959 3 C -0.143 4.143 4 C -0.584 4.584 5 H 0.053 0.947 6 C 0.025 3.975 7 N -0.919 5.919 8 Si 1.068 2.932 9 H -0.288 1.288 10 H -0.289 1.289 11 H -0.285 1.285 12 C 0.158 3.842 13 N -0.732 5.732 14 C 0.723 3.277 15 O -0.594 6.594 16 N -0.646 5.646 17 C 0.152 3.848 18 C -0.161 4.161 19 H 0.120 0.880 20 C -0.116 4.116 21 H 0.116 0.884 22 C 0.107 3.893 23 O -0.571 6.571 24 C -0.168 4.168 25 H 0.124 0.876 26 C 0.130 3.870 27 H 0.073 0.927 28 H 0.014 0.986 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.014 0.986 32 H 0.071 0.929 33 H 0.281 0.719 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.392 0.608 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.050 0.950 40 H 0.054 0.946 41 H 0.381 0.619 42 H 0.074 0.926 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.304 6.408 -20.796 21.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.041 3.959 3 C -0.201 4.201 4 C -0.623 4.623 5 H 0.071 0.929 6 C -0.178 4.178 7 N -0.559 5.559 8 Si 0.897 3.103 9 H -0.215 1.215 10 H -0.215 1.215 11 H -0.211 1.211 12 C 0.035 3.965 13 N -0.387 5.387 14 C 0.425 3.575 15 O -0.473 6.473 16 N -0.386 5.386 17 C 0.028 3.972 18 C -0.180 4.180 19 H 0.138 0.862 20 C -0.134 4.134 21 H 0.134 0.866 22 C 0.030 3.970 23 O -0.377 6.377 24 C -0.188 4.188 25 H 0.142 0.858 26 C 0.006 3.994 27 H 0.092 0.908 28 H 0.033 0.967 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.033 0.967 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.227 0.773 37 H 0.107 0.893 38 H 0.088 0.912 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.229 0.771 42 H 0.092 0.908 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.977 5.169 -18.599 19.329 hybrid contribution 0.082 0.859 -2.085 2.257 sum -0.895 6.027 -20.684 21.563 Atomic orbital electron populations 1.22060 0.98338 0.99326 1.00556 1.18535 0.92308 0.92725 0.92376 1.22043 0.99301 0.98354 1.00443 1.21779 1.35180 1.14180 0.91134 0.92898 1.25676 0.94700 0.96469 1.00993 1.70851 1.31787 1.18679 1.34630 0.83556 0.75925 0.75502 0.75339 1.21500 1.21466 1.21087 1.21493 0.97985 0.95365 0.81653 1.45510 1.55769 1.32993 1.04416 1.15471 0.80011 0.82325 0.79683 1.90894 1.43329 1.27580 1.85495 1.48342 1.54505 1.30699 1.05025 1.21507 1.02267 0.94076 0.79347 1.23768 0.97224 0.94567 1.02483 0.86218 1.22926 0.98704 0.99460 0.92337 0.86636 1.21591 0.85263 0.95122 0.95042 1.86481 1.30059 1.60433 1.60694 1.24581 1.04793 0.99574 0.89814 0.85843 1.21790 0.94029 0.85818 0.97731 0.90831 0.96725 0.94449 0.94446 0.96703 0.91005 0.90284 0.92725 0.92688 0.77285 0.89291 0.91202 0.93173 0.92822 0.77139 0.90757 0.90058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 7.88 37.16 0.29 -2.98 16 2 C 0.04 0.97 0.50 -155.66 -0.08 0.90 16 3 C -0.14 -3.22 7.88 37.15 0.29 -2.92 16 4 C -0.58 -15.74 8.01 -34.44 -0.28 -16.02 16 5 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 6 C 0.03 0.69 5.10 -17.82 -0.09 0.60 16 7 N -0.92 -26.01 12.12 55.43 0.67 -25.34 16 8 Si 1.07 24.68 29.90 -169.99 -5.08 19.60 16 9 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 C 0.16 3.48 4.49 -4.04 -0.02 3.47 16 13 N -0.73 -13.77 5.02 -65.22 -0.33 -14.09 16 14 C 0.72 13.70 8.57 -86.92 -0.74 12.95 16 15 O -0.59 -13.51 16.61 5.29 0.09 -13.42 16 16 N -0.65 -9.37 3.31 -174.79 -0.58 -9.95 16 17 C 0.15 1.78 6.84 -2.41 -0.02 1.77 16 18 C -0.16 -1.46 6.71 -89.22 -0.60 -2.06 16 19 H 0.12 0.95 8.14 -51.93 -0.42 0.52 16 20 C -0.12 -0.96 5.81 -88.38 -0.51 -1.47 16 21 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 22 C 0.11 0.71 7.33 37.16 0.27 0.98 16 23 O -0.57 -4.27 13.66 -35.23 -0.48 -4.75 16 24 C -0.17 -1.57 6.93 -86.79 -0.60 -2.17 16 25 H 0.12 1.05 8.14 -51.93 -0.42 0.62 16 26 C 0.13 1.46 6.77 -2.22 -0.01 1.44 16 27 H 0.07 1.83 5.20 -51.93 -0.27 1.56 16 28 H 0.01 0.27 7.05 -51.93 -0.37 -0.09 16 29 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.04 0.83 8.13 -51.93 -0.42 0.41 16 31 H 0.01 0.28 7.05 -51.93 -0.37 -0.09 16 32 H 0.07 1.77 5.25 -51.93 -0.27 1.50 16 33 H 0.28 7.68 3.56 -40.82 -0.15 7.53 16 34 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.39 6.64 4.69 -40.82 -0.19 6.45 16 37 H 0.09 1.14 7.88 -51.93 -0.41 0.73 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.29 7.95 -51.93 -0.41 -0.12 16 40 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 41 H 0.38 1.05 9.12 45.56 0.42 1.46 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.08 0.90 6.86 -51.93 -0.36 0.54 16 LS Contribution 338.52 15.07 5.10 5.10 Total: -1.00 -32.81 338.52 -8.51 -41.32 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -5.80 Total: 7.03 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -2.10 Total: -5.50 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: -0.23 Total: -49.38 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.39 Total: -18.17 kcal Atomic # 14 Polarization: 24.68 SS G_CDS: -5.08 Total: 19.60 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.81 -8.51 -41.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001681879145.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.204 kcal (2) G-P(sol) polarization free energy of solvation -32.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds