Wall clock time and date at job start Tue Mar 31 2020 05:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46885 * 2 1 4 4 H 1.08993 * 109.82416 * 305.56552 * 3 2 1 5 5 C 1.54381 * 109.82806 * 184.58562 * 3 2 1 6 6 C 1.55301 * 102.25563 * 219.13459 * 5 3 2 7 7 C 1.54945 * 100.94110 * 34.13288 * 6 5 3 8 8 H 1.08991 * 110.39584 * 82.51955 * 7 6 5 9 9 C 1.50704 * 110.31113 * 204.64620 * 7 6 5 10 10 O 1.21274 * 120.00655 * 112.16498 * 9 7 6 11 11 N 1.34777 * 119.99664 * 292.16655 * 9 7 6 12 12 C 1.46503 * 120.00026 * 180.02562 * 11 9 7 13 13 C 1.50699 * 109.47270 * 180.02562 * 12 11 9 14 14 C 1.31002 * 120.00597 * 127.15311 * 13 12 11 15 15 C 1.50702 * 119.99587 * 7.55627 * 14 13 12 16 16 N 1.46497 * 109.47133 * 127.00321 * 15 14 13 17 17 C 1.36929 * 120.00319 * 179.97438 * 16 15 14 18 18 H 1.08002 * 119.99973 * 0.02562 * 17 16 15 19 19 C 1.38818 * 120.00095 * 180.02562 * 17 16 15 20 20 N 1.31625 * 119.99789 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99971 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.46922 * 90.00165 * 21 19 17 23 23 H 1.48506 * 109.47010 * 210.00014 * 21 19 17 24 24 H 1.48493 * 109.47021 * 330.00209 * 21 19 17 25 25 O 1.43237 * 109.82783 * 66.45514 * 3 2 1 26 26 H 1.09009 * 109.47231 * 59.99868 * 1 2 3 27 27 H 1.08998 * 109.46847 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47424 * 300.00032 * 1 2 3 29 29 H 1.08999 * 109.47192 * 120.00079 * 2 1 3 30 30 H 1.08998 * 109.47159 * 240.00434 * 2 1 3 31 31 H 1.09001 * 110.84971 * 337.32563 * 5 3 2 32 32 H 1.09003 * 110.85006 * 100.94025 * 5 3 2 33 33 H 1.09004 * 111.12575 * 276.21514 * 6 5 3 34 34 H 1.08994 * 111.13154 * 152.05645 * 6 5 3 35 35 H 0.97000 * 120.00031 * 359.97438 * 11 9 7 36 36 H 1.09003 * 109.46622 * 299.99544 * 12 11 9 37 37 H 1.08994 * 109.47022 * 59.99703 * 12 11 9 38 38 H 1.08000 * 119.99801 * 307.15467 * 13 12 11 39 39 H 1.07996 * 120.00433 * 187.56255 * 14 13 12 40 40 H 1.08996 * 109.47303 * 247.00835 * 15 14 13 41 41 H 1.09008 * 109.47216 * 7.00840 * 15 14 13 42 42 H 0.97001 * 119.99777 * 0.02562 * 16 15 14 43 43 H 0.97002 * 119.99798 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6009 1.9898 -0.8341 5 6 3.5794 1.4538 -0.1161 6 6 3.9741 2.6074 0.8458 7 6 2.8862 2.4634 1.9397 8 1 3.1674 1.6914 2.6558 9 6 2.6765 3.7785 2.6451 10 8 1.6319 4.3795 2.5098 11 7 3.6500 4.2868 3.4264 12 6 3.4460 5.5650 4.1127 13 6 4.6755 5.9066 4.9144 14 6 5.2544 7.0718 4.7615 15 6 4.5995 8.1332 3.9156 16 7 4.4888 9.3734 4.6875 17 6 3.9227 10.4842 4.1212 18 1 3.5574 10.4459 3.1056 19 6 3.8183 11.6595 4.8525 20 7 3.2737 12.7270 4.3083 21 14 4.4508 11.7259 6.6089 22 1 5.8751 12.1463 6.6065 23 1 3.6477 12.7027 7.3876 24 1 4.3325 10.3818 7.2288 25 8 1.6944 2.0800 1.2353 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 4.0007 0.5066 0.2206 32 1 3.8898 1.6765 -1.1370 33 1 3.9053 3.5747 0.3482 34 1 4.9703 2.4506 1.2594 35 1 4.4854 3.8060 3.5350 36 1 3.2638 6.3477 3.3763 37 1 2.5873 5.4864 4.7794 38 1 5.0794 5.1907 5.6150 39 1 6.2009 7.2716 5.2415 40 1 5.2027 8.3118 3.0255 41 1 3.6049 7.7996 3.6196 42 1 4.8173 9.4079 5.5996 43 1 3.2011 13.5484 4.8192 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699265085.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:47 Heat of formation + Delta-G solvation = -53.569836 kcal Electronic energy + Delta-G solvation = -21616.576053 eV Core-core repulsion = 18276.585881 eV Total energy + Delta-G solvation = -3339.990172 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.57331 -38.86831 -36.66078 -34.64644 -33.88794 -33.02762 -32.35364 -30.87811 -29.23807 -26.76327 -25.25410 -24.10702 -22.27035 -22.07193 -21.38862 -20.36883 -19.05262 -17.93880 -17.39574 -16.69674 -16.24838 -16.02792 -15.29158 -14.85343 -14.52599 -14.43866 -14.21565 -13.78875 -13.52625 -13.47458 -13.24502 -13.12385 -12.75356 -12.59622 -12.26277 -12.21498 -11.96766 -11.82682 -11.35049 -11.24197 -11.22230 -11.05441 -10.86500 -10.54447 -10.19180 -10.12295 -9.62033 -9.59251 -9.25912 -9.07498 -8.67320 -7.22833 -5.76506 -3.12889 2.08763 2.52437 2.95225 3.37923 3.40374 3.45716 3.68689 4.02339 4.26976 4.42811 4.59298 4.62505 4.70745 4.79663 4.87060 4.95414 5.01874 5.08149 5.17266 5.29131 5.36586 5.44234 5.51561 5.52357 5.55928 5.63074 5.63459 5.65560 5.79614 5.89470 6.03458 6.05660 6.23159 6.42482 6.46832 6.65415 6.74759 7.00506 7.43095 7.99023 8.17684 8.41998 9.20343 9.92198 10.11652 11.41659 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033431 B = 0.002609 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.345161 B =10730.658025 C =11006.682045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C 0.075 3.925 4 H 0.083 0.917 5 C -0.149 4.149 6 C -0.146 4.146 7 C 0.065 3.935 8 H 0.094 0.906 9 C 0.508 3.492 10 O -0.516 6.516 11 N -0.722 5.722 12 C 0.139 3.861 13 C -0.193 4.193 14 C -0.118 4.118 15 C 0.166 3.834 16 N -0.751 5.751 17 C -0.246 4.246 18 H 0.091 0.909 19 C 0.004 3.996 20 N -0.932 5.932 21 Si 0.886 3.114 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.277 1.277 25 O -0.345 6.345 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.398 0.602 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.037 0.963 41 H 0.044 0.956 42 H 0.362 0.638 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.084 -29.433 -6.548 30.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.169 4.169 3 C 0.018 3.982 4 H 0.101 0.899 5 C -0.187 4.187 6 C -0.184 4.184 7 C 0.004 3.996 8 H 0.111 0.889 9 C 0.292 3.708 10 O -0.390 6.390 11 N -0.376 5.376 12 C 0.017 3.983 13 C -0.212 4.212 14 C -0.138 4.138 15 C 0.040 3.960 16 N -0.397 5.397 17 C -0.376 4.376 18 H 0.109 0.891 19 C -0.191 4.191 20 N -0.580 5.580 21 Si 0.716 3.284 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.203 1.203 25 O -0.263 6.263 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.232 0.768 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.054 0.946 41 H 0.061 0.939 42 H 0.195 0.805 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.948 -28.789 -6.763 29.719 hybrid contribution 1.124 -0.087 1.392 1.791 sum 4.072 -28.875 -5.371 29.651 Atomic orbital electron populations 1.21720 0.95118 1.01370 1.02648 1.21904 0.97237 0.95488 1.02296 1.22902 0.94191 0.93641 0.87502 0.89880 1.23191 0.95313 0.99105 1.01097 1.23251 0.98736 1.00499 0.95903 1.22797 0.86771 0.94575 0.95441 0.88851 1.20429 0.84068 0.86798 0.79509 1.90764 1.26309 1.60599 1.61323 1.45923 1.18495 1.23960 1.49180 1.20584 0.96666 0.84998 0.96005 1.22627 0.98031 0.99079 1.01476 1.23318 0.98094 0.94927 0.97418 1.19978 0.97637 0.84998 0.93430 1.42613 1.74647 1.08651 1.13749 1.19069 1.31876 0.87594 0.99072 0.89109 1.24687 1.00765 0.95744 0.97943 1.69709 1.49619 1.01798 1.36894 0.86519 0.78618 0.77153 0.86089 1.21055 1.21649 1.20287 1.88578 1.27256 1.77715 1.32787 0.92771 0.92942 0.91779 0.91518 0.91003 0.90028 0.89519 0.89476 0.88977 0.76831 0.89132 0.90911 0.86936 0.86888 0.94553 0.93891 0.80548 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.82 37.16 0.37 -0.80 16 2 C -0.13 -0.90 5.50 -26.73 -0.15 -1.04 16 3 C 0.08 0.63 3.52 -26.01 -0.09 0.54 16 4 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 5 C -0.15 -0.87 6.54 -24.79 -0.16 -1.03 16 6 C -0.15 -1.01 6.56 -24.48 -0.16 -1.17 16 7 C 0.07 0.63 3.86 -26.85 -0.10 0.53 16 8 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 9 C 0.51 6.72 7.17 -10.98 -0.08 6.65 16 10 O -0.52 -9.63 16.55 -13.76 -0.23 -9.86 16 11 N -0.72 -7.88 5.55 -61.47 -0.34 -8.22 16 12 C 0.14 1.90 5.76 -5.19 -0.03 1.87 16 13 C -0.19 -2.38 9.63 -36.03 -0.35 -2.73 16 14 C -0.12 -1.74 9.63 -36.03 -0.35 -2.09 16 15 C 0.17 3.22 6.35 -5.19 -0.03 3.19 16 16 N -0.75 -18.20 5.40 -61.08 -0.33 -18.53 16 17 C -0.25 -7.14 10.47 -15.06 -0.16 -7.30 16 18 H 0.09 2.82 8.06 -52.49 -0.42 2.39 16 19 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 20 N -0.93 -29.76 13.97 55.49 0.78 -28.99 16 21 Si 0.89 22.34 27.74 -169.99 -4.71 17.62 16 22 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 24 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 25 O -0.35 -4.15 9.89 -54.55 -0.54 -4.69 16 26 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.61 7.88 -51.93 -0.41 0.20 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.36 7.85 -51.93 -0.41 -0.05 16 32 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.73 8.05 -51.93 -0.42 0.31 16 34 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.40 2.90 8.46 -40.82 -0.35 2.56 16 36 H 0.09 1.46 5.30 -51.93 -0.28 1.19 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.11 1.10 8.06 -52.49 -0.42 0.68 16 39 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 40 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.04 0.87 5.30 -51.92 -0.27 0.59 16 42 H 0.36 8.49 5.52 -40.82 -0.23 8.26 16 43 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 LS Contribution 352.40 15.07 5.31 5.31 Total: -1.00 -35.99 352.40 -8.48 -44.47 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -7.02 Total: 6.25 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -1.39 Total: -3.36 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: 0.10 Total: -55.74 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.77 Total: -14.55 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.71 Total: 17.62 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.99 -8.48 -44.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699265085.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.102 kcal (2) G-P(sol) polarization free energy of solvation -35.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds