Wall clock time and date at job start Tue Mar 31 2020 05:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46981 * 2 1 4 4 H 1.09005 * 110.54871 * 307.87996 * 3 2 1 5 5 C 1.54994 * 110.61635 * 184.99845 * 3 2 1 6 6 C 1.54808 * 102.08943 * 204.31594 * 5 3 2 7 7 C 1.54096 * 104.18838 * 20.88238 * 6 5 3 8 8 H 1.08997 * 109.88115 * 242.44902 * 7 6 5 9 9 C 1.50702 * 109.87912 * 121.45261 * 7 6 5 10 10 O 1.21283 * 120.00262 * 245.00277 * 9 7 6 11 11 N 1.34777 * 119.99928 * 64.72183 * 9 7 6 12 12 C 1.46499 * 120.00199 * 180.27479 * 11 9 7 13 13 C 1.50694 * 109.47550 * 180.02562 * 12 11 9 14 14 C 1.31003 * 120.00016 * 124.99989 * 13 12 11 15 15 C 1.50701 * 119.99850 * 180.02562 * 14 13 12 16 16 N 1.46503 * 109.46896 * 125.00305 * 15 14 13 17 17 C 1.36944 * 119.99768 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99903 * 359.97438 * 17 16 15 19 19 C 1.38811 * 119.99534 * 179.97438 * 17 16 15 20 20 N 1.31612 * 120.00334 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99654 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47089 * 89.99965 * 21 19 17 23 23 H 1.48500 * 109.47160 * 210.00058 * 21 19 17 24 24 H 1.48501 * 109.47369 * 330.00208 * 21 19 17 25 25 O 1.43740 * 107.29510 * 2.03212 * 7 6 5 26 26 H 1.09001 * 109.47325 * 59.99889 * 1 2 3 27 27 H 1.09005 * 109.47116 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47674 * 299.99799 * 1 2 3 29 29 H 1.08999 * 109.46953 * 240.00395 * 2 1 3 30 30 H 1.08997 * 109.46957 * 119.99785 * 2 1 3 31 31 H 1.09007 * 110.90396 * 86.12291 * 5 3 2 32 32 H 1.08996 * 110.91183 * 322.51800 * 5 3 2 33 33 H 1.09005 * 110.48773 * 262.20583 * 6 5 3 34 34 H 1.09006 * 110.48634 * 139.55918 * 6 5 3 35 35 H 0.97000 * 120.00317 * 0.28382 * 11 9 7 36 36 H 1.08998 * 109.47134 * 300.00670 * 12 11 9 37 37 H 1.09002 * 109.46857 * 59.99862 * 12 11 9 38 38 H 1.08002 * 120.00062 * 305.00756 * 13 12 11 39 39 H 1.07995 * 120.00110 * 0.02562 * 14 13 12 40 40 H 1.08998 * 109.47070 * 244.99982 * 15 14 13 41 41 H 1.09005 * 109.47342 * 5.00198 * 15 14 13 42 42 H 0.96995 * 119.99897 * 359.97438 * 16 15 14 43 43 H 0.97003 * 120.00040 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5766 2.0122 -0.8056 5 6 3.5844 1.4754 -0.1264 6 6 3.9328 2.8428 0.5104 7 6 2.7067 3.1769 1.3819 8 1 2.2326 4.0894 1.0204 9 6 3.1310 3.3543 2.8170 10 8 2.7394 2.5810 3.6653 11 7 3.9503 4.3691 3.1570 12 6 4.3677 4.5380 4.5510 13 6 5.2738 5.7369 4.6624 14 6 4.9881 6.6978 5.5057 15 6 5.8941 7.8970 5.6167 16 7 5.1144 9.1192 5.4051 17 6 5.7295 10.3416 5.4588 18 1 6.7892 10.4046 5.6576 19 6 4.9909 11.4995 5.2578 20 7 3.6996 11.4226 5.0150 21 14 5.8297 13.1670 5.3318 22 1 6.3144 13.5378 3.9780 23 1 4.8615 14.1875 5.8076 24 1 6.9801 13.1013 6.2686 25 8 1.7929 2.0725 1.2755 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8898 1.4444 -1.1724 32 1 4.0381 0.6582 0.4343 33 1 4.0696 3.5996 -0.2620 34 1 4.8279 2.7594 1.1270 35 1 4.2635 4.9877 2.4786 36 1 3.4886 4.6879 5.1779 37 1 4.9014 3.6467 4.8810 38 1 6.1588 5.8040 4.0470 39 1 4.1034 6.6307 6.1214 40 1 6.3452 7.9210 6.6086 41 1 6.6782 7.8311 4.8624 42 1 4.1628 9.0625 5.2262 43 1 3.1836 12.2318 4.8742 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699265087.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:50 Heat of formation + Delta-G solvation = -66.663537 kcal Electronic energy + Delta-G solvation = -21305.975538 eV Core-core repulsion = 17965.417580 eV Total energy + Delta-G solvation = -3340.557958 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.56489 -38.76547 -36.26039 -34.72674 -33.96232 -33.01111 -32.31116 -30.67298 -29.16415 -27.01047 -24.80309 -23.75957 -22.27835 -21.87981 -21.32229 -20.59609 -19.47370 -17.59430 -17.12045 -16.95180 -16.52589 -15.60878 -15.19974 -14.78185 -14.64920 -14.13102 -13.95698 -13.84955 -13.74307 -13.45004 -13.32975 -13.25230 -12.83374 -12.15140 -12.11275 -12.00181 -11.89040 -11.76690 -11.36032 -11.15443 -11.05442 -10.98057 -10.84888 -10.64549 -10.31872 -10.10055 -9.83419 -9.66806 -9.25235 -9.01073 -8.73477 -6.97562 -5.80383 -3.10152 2.21048 2.52572 3.00166 3.41173 3.46312 3.48285 3.71313 4.10522 4.30721 4.47213 4.56282 4.57337 4.74722 4.86395 4.90369 4.97059 5.00677 5.19014 5.24412 5.31345 5.36744 5.45792 5.52601 5.56352 5.59718 5.64012 5.66882 5.78537 5.84095 5.97364 6.02118 6.10938 6.30140 6.44368 6.53967 6.56110 6.87909 7.11966 7.43720 7.65793 8.14918 8.37882 9.49183 10.05370 10.40631 11.42301 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029210 B = 0.002367 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.359732 B =11824.720743 C =12145.318360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C 0.072 3.928 4 H 0.073 0.927 5 C -0.150 4.150 6 C -0.148 4.148 7 C 0.060 3.940 8 H 0.096 0.904 9 C 0.511 3.489 10 O -0.524 6.524 11 N -0.722 5.722 12 C 0.157 3.843 13 C -0.202 4.202 14 C -0.105 4.105 15 C 0.172 3.828 16 N -0.730 5.730 17 C -0.243 4.243 18 H 0.071 0.929 19 C -0.014 4.014 20 N -0.932 5.932 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 O -0.341 6.341 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.403 0.597 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.115 0.885 39 H 0.110 0.890 40 H 0.031 0.969 41 H 0.026 0.974 42 H 0.385 0.615 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.865 -22.115 -12.758 25.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C 0.015 3.985 4 H 0.091 0.909 5 C -0.187 4.187 6 C -0.186 4.186 7 C -0.001 4.001 8 H 0.114 0.886 9 C 0.296 3.704 10 O -0.399 6.399 11 N -0.376 5.376 12 C 0.034 3.966 13 C -0.222 4.222 14 C -0.125 4.125 15 C 0.045 3.955 16 N -0.374 5.374 17 C -0.374 4.374 18 H 0.089 0.911 19 C -0.210 4.210 20 N -0.581 5.581 21 Si 0.740 3.260 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 O -0.259 6.259 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.238 0.762 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.133 0.867 39 H 0.128 0.872 40 H 0.049 0.951 41 H 0.043 0.957 42 H 0.219 0.781 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.194 -22.624 -11.934 25.607 hybrid contribution 0.422 1.454 -0.477 1.588 sum -0.772 -21.170 -12.411 24.552 Atomic orbital electron populations 1.21745 0.95129 1.01681 1.02389 1.21549 0.96900 0.94131 1.02840 1.23299 0.94156 0.94638 0.86448 0.90881 1.23188 0.96182 0.97456 1.01900 1.22946 0.97839 0.98398 0.99412 1.22601 0.91528 0.92798 0.93185 0.88609 1.20446 0.78717 0.80957 0.90283 1.90717 1.54411 1.43542 1.51277 1.45983 1.49868 1.30709 1.11000 1.20314 0.97409 0.96923 0.81946 1.22677 1.00894 0.96082 1.02498 1.23351 0.98880 0.94093 0.96161 1.19828 0.92724 0.84660 0.98252 1.42301 1.08646 1.00117 1.86348 1.19244 0.93241 0.83737 1.41148 0.91058 1.24773 0.95728 0.97908 1.02576 1.69664 1.05536 1.27630 1.55241 0.86158 0.78203 0.83983 0.77639 1.21663 1.21702 1.20701 1.89022 1.56230 1.44006 1.36689 0.92852 0.92684 0.91836 0.90609 0.90834 0.89766 0.90149 0.89329 0.89812 0.76234 0.91159 0.91102 0.86737 0.87234 0.95115 0.95672 0.78130 0.93425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.86 37.16 0.37 -0.78 16 2 C -0.12 -0.87 5.70 -26.73 -0.15 -1.03 16 3 C 0.07 0.60 3.28 -25.68 -0.08 0.52 16 4 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 5 C -0.15 -1.03 6.59 -24.73 -0.16 -1.19 16 6 C -0.15 -1.09 6.61 -25.21 -0.17 -1.25 16 7 C 0.06 0.63 3.84 -27.31 -0.10 0.52 16 8 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 9 C 0.51 6.85 6.95 -10.98 -0.08 6.77 16 10 O -0.52 -9.33 16.53 -14.02 -0.23 -9.57 16 11 N -0.72 -8.40 5.52 -61.47 -0.34 -8.74 16 12 C 0.16 2.00 6.11 -5.20 -0.03 1.97 16 13 C -0.20 -2.70 9.24 -36.03 -0.33 -3.03 16 14 C -0.11 -1.70 9.24 -36.03 -0.33 -2.03 16 15 C 0.17 3.42 6.70 -5.19 -0.03 3.38 16 16 N -0.73 -18.52 5.59 -61.08 -0.34 -18.87 16 17 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 18 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 20 N -0.93 -28.21 13.06 55.49 0.72 -27.48 16 21 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 O -0.34 -4.19 10.31 -54.81 -0.56 -4.76 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.60 8.06 -51.93 -0.42 0.18 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.59 8.06 -51.93 -0.42 0.17 16 33 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.63 7.69 -51.93 -0.40 0.23 16 35 H 0.40 3.80 8.46 -40.82 -0.35 3.45 16 36 H 0.07 0.98 7.79 -51.93 -0.40 0.58 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.11 1.42 7.84 -52.49 -0.41 1.01 16 39 H 0.11 1.75 7.84 -52.49 -0.41 1.34 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.03 0.49 7.79 -51.93 -0.40 0.09 16 42 H 0.39 10.30 7.66 -40.82 -0.31 9.99 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 LS Contribution 360.25 15.07 5.43 5.43 Total: -1.00 -34.05 360.25 -9.01 -43.05 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -7.30 Total: 7.27 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -1.36 Total: -3.58 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: 0.04 Total: -55.09 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.80 Total: -14.32 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.05 -9.01 -43.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699265087.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.611 kcal (2) G-P(sol) polarization free energy of solvation -34.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds