Wall clock time and date at job start Tue Mar 31 2020 05:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09000 * 109.82544 * 305.57326 * 3 2 1 5 5 C 1.54379 * 109.83254 * 184.59100 * 3 2 1 6 6 C 1.55313 * 102.25252 * 219.12826 * 5 3 2 7 7 C 1.54953 * 100.93976 * 34.13279 * 6 5 3 8 8 H 1.09004 * 110.39063 * 82.51051 * 7 6 5 9 9 C 1.50693 * 110.30819 * 204.63715 * 7 6 5 10 10 O 1.21284 * 119.99935 * 112.16721 * 9 7 6 11 11 N 1.34771 * 120.00292 * 292.17050 * 9 7 6 12 12 C 1.46507 * 120.00475 * 180.02562 * 11 9 7 13 13 C 1.50696 * 109.47300 * 179.97438 * 12 11 9 14 14 C 1.31000 * 120.00326 * 125.00050 * 13 12 11 15 15 C 1.50697 * 120.00437 * 179.97438 * 14 13 12 16 16 N 1.46500 * 109.47367 * 124.99504 * 15 14 13 17 17 C 1.36929 * 120.00122 * 180.02562 * 16 15 14 18 18 H 1.07996 * 120.00014 * 359.97438 * 17 16 15 19 19 C 1.38813 * 120.00046 * 180.02562 * 17 16 15 20 20 N 1.31621 * 120.00232 * 179.97438 * 19 17 16 21 21 Si 1.86808 * 119.99835 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.46945 * 90.00554 * 21 19 17 23 23 H 1.48500 * 109.47040 * 209.99946 * 21 19 17 24 24 H 1.48499 * 109.46958 * 330.00422 * 21 19 17 25 25 O 1.43239 * 109.83027 * 66.45195 * 3 2 1 26 26 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 31 31 H 1.08993 * 110.84821 * 337.31660 * 5 3 2 32 32 H 1.08994 * 110.84800 * 100.94120 * 5 3 2 33 33 H 1.08995 * 111.12270 * 276.21442 * 6 5 3 34 34 H 1.09003 * 111.15893 * 152.06598 * 6 5 3 35 35 H 0.97003 * 120.00333 * 359.97438 * 11 9 7 36 36 H 1.08999 * 109.46402 * 299.99732 * 12 11 9 37 37 H 1.09000 * 109.46517 * 59.99406 * 12 11 9 38 38 H 1.07999 * 119.99535 * 304.99501 * 13 12 11 39 39 H 1.07998 * 119.99624 * 359.97438 * 14 13 12 40 40 H 1.08993 * 109.47530 * 245.00321 * 15 14 13 41 41 H 1.09010 * 109.46951 * 5.00140 * 15 14 13 42 42 H 0.97002 * 119.99611 * 0.02562 * 16 15 14 43 43 H 0.96995 * 119.99989 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6008 1.9899 -0.8340 5 6 3.5793 1.4538 -0.1162 6 6 3.9741 2.6076 0.8456 7 6 2.8862 2.4636 1.9396 8 1 3.1675 1.6914 2.6557 9 6 2.6766 3.7786 2.6451 10 8 1.6318 4.3795 2.5098 11 7 3.6500 4.2869 3.4263 12 6 3.4461 5.5651 4.1126 13 6 4.6751 5.9062 4.9151 14 6 5.2791 7.0542 4.7323 15 6 6.5079 7.3955 5.5352 16 7 7.6062 7.7344 4.6269 17 6 8.8309 8.0802 5.1325 18 1 8.9870 8.1034 6.2009 19 6 9.8714 8.4019 4.2719 20 7 11.0484 8.7348 4.7578 21 14 9.6011 8.3625 2.4239 22 1 9.1378 9.6959 1.9628 23 1 10.8761 8.0194 1.7443 24 1 8.5745 7.3409 2.0955 25 8 1.6944 2.0800 1.2352 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 4.0007 0.5067 0.2206 32 1 3.8896 1.6766 -1.1371 33 1 3.9051 3.5748 0.3479 34 1 4.9704 2.4514 1.2594 35 1 4.4855 3.8062 3.5348 36 1 3.2638 6.3478 3.3762 37 1 2.5874 5.4864 4.7794 38 1 5.0580 5.2041 5.6410 39 1 4.8964 7.7560 4.0061 40 1 6.2948 8.2469 6.1814 41 1 6.7927 6.5384 6.1456 42 1 7.4658 7.7139 3.6673 43 1 11.7756 8.9592 4.1564 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699265345.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:53 Heat of formation + Delta-G solvation = -63.136680 kcal Electronic energy + Delta-G solvation = -21454.859799 eV Core-core repulsion = 18114.454778 eV Total energy + Delta-G solvation = -3340.405022 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.62799 -38.91638 -36.42635 -34.88666 -33.92981 -33.05779 -32.39787 -31.01842 -29.32371 -27.32419 -24.91667 -23.74575 -22.29306 -21.72475 -21.36658 -20.56353 -19.61363 -17.97856 -17.61995 -17.09796 -16.16276 -15.90089 -15.19012 -14.78988 -14.60858 -14.47561 -14.28044 -13.81698 -13.70226 -13.51837 -13.29259 -13.14115 -12.76639 -12.40320 -12.24915 -12.20332 -12.11048 -11.85475 -11.39973 -11.35920 -11.26932 -11.08222 -10.92028 -10.72222 -10.27385 -10.19817 -9.70680 -9.65331 -9.38328 -9.09272 -8.81929 -7.29713 -5.81983 -3.18440 2.07656 2.41731 2.89970 3.33221 3.36453 3.41533 3.64535 4.00692 4.25283 4.38455 4.54305 4.60506 4.67082 4.75977 4.80171 4.89415 4.99524 5.06084 5.11781 5.30881 5.36165 5.41874 5.46475 5.49114 5.49718 5.60066 5.60348 5.63304 5.71153 5.84346 5.86615 5.98835 6.19356 6.32166 6.44658 6.60539 6.74850 6.97478 7.33856 7.93332 8.05625 8.36699 9.15088 9.87168 10.06830 11.36142 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022950 B = 0.002819 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.755731 B = 9930.331204 C =10821.709632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C 0.076 3.924 4 H 0.082 0.918 5 C -0.150 4.150 6 C -0.147 4.147 7 C 0.065 3.935 8 H 0.096 0.904 9 C 0.511 3.489 10 O -0.524 6.524 11 N -0.722 5.722 12 C 0.155 3.845 13 C -0.196 4.196 14 C -0.115 4.115 15 C 0.177 3.823 16 N -0.753 5.753 17 C -0.247 4.247 18 H 0.091 0.909 19 C 0.005 3.995 20 N -0.933 5.933 21 Si 0.886 3.114 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.277 1.277 25 O -0.346 6.346 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.403 0.597 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.118 0.882 39 H 0.109 0.891 40 H 0.040 0.960 41 H 0.034 0.966 42 H 0.362 0.638 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.159 -18.288 -8.983 27.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.170 4.170 3 C 0.018 3.982 4 H 0.100 0.900 5 C -0.187 4.187 6 C -0.185 4.185 7 C 0.003 3.997 8 H 0.114 0.886 9 C 0.296 3.704 10 O -0.399 6.399 11 N -0.376 5.376 12 C 0.032 3.968 13 C -0.215 4.215 14 C -0.135 4.135 15 C 0.051 3.949 16 N -0.399 5.399 17 C -0.377 4.377 18 H 0.109 0.891 19 C -0.191 4.191 20 N -0.580 5.580 21 Si 0.716 3.284 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.203 1.203 25 O -0.264 6.264 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.113 0.887 35 H 0.237 0.763 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.135 0.865 39 H 0.127 0.873 40 H 0.058 0.942 41 H 0.052 0.948 42 H 0.195 0.805 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.967 -17.758 -8.843 27.446 hybrid contribution 0.625 -0.217 -1.302 1.461 sum -18.342 -17.975 -10.145 27.612 Atomic orbital electron populations 1.21715 0.95161 1.01393 1.02525 1.21908 0.97176 0.95479 1.02422 1.22898 0.94269 0.93640 0.87363 0.89966 1.23192 0.95187 0.99214 1.01119 1.23261 0.98948 1.00411 0.95860 1.22806 0.86780 0.94544 0.95535 0.88638 1.20450 0.83890 0.86801 0.79279 1.90724 1.26465 1.60897 1.61808 1.45974 1.18747 1.23912 1.48945 1.20335 0.96680 0.84869 0.94878 1.22736 0.97905 0.98797 1.02086 1.23365 0.95682 0.96447 0.97959 1.19792 0.84846 0.98165 0.92132 1.42641 1.09092 1.84253 1.03871 1.19062 0.86026 1.38396 0.94220 0.89119 1.24688 0.95575 1.01351 0.97517 1.69701 1.01899 1.52536 1.33890 0.86525 0.76943 0.77894 0.87020 1.21004 1.21659 1.20345 1.88559 1.27298 1.77734 1.32857 0.92832 0.92903 0.91846 0.91429 0.90946 0.89892 0.89495 0.89636 0.88727 0.76252 0.91195 0.90852 0.86456 0.87294 0.94245 0.94840 0.80534 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.82 37.16 0.37 -0.74 16 2 C -0.13 -0.89 5.50 -26.73 -0.15 -1.04 16 3 C 0.08 0.62 3.52 -26.01 -0.09 0.53 16 4 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 5 C -0.15 -0.94 6.54 -24.78 -0.16 -1.10 16 6 C -0.15 -1.11 6.56 -24.47 -0.16 -1.27 16 7 C 0.06 0.62 3.86 -26.86 -0.10 0.52 16 8 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 9 C 0.51 6.42 7.17 -10.99 -0.08 6.34 16 10 O -0.52 -8.93 16.55 -13.77 -0.23 -9.16 16 11 N -0.72 -7.70 5.55 -61.47 -0.34 -8.04 16 12 C 0.15 1.82 6.11 -5.19 -0.03 1.79 16 13 C -0.20 -2.40 9.24 -36.03 -0.33 -2.73 16 14 C -0.12 -1.69 9.24 -36.03 -0.33 -2.02 16 15 C 0.18 3.30 6.70 -5.20 -0.03 3.27 16 16 N -0.75 -17.66 5.40 -61.09 -0.33 -17.99 16 17 C -0.25 -6.95 10.47 -15.06 -0.16 -7.11 16 18 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 19 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 20 N -0.93 -29.06 13.97 55.49 0.78 -28.28 16 21 Si 0.89 21.82 27.74 -169.99 -4.71 17.10 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 25 O -0.35 -4.02 9.89 -54.56 -0.54 -4.56 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.57 7.88 -51.93 -0.41 0.16 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.42 7.85 -51.93 -0.41 0.01 16 32 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.75 8.05 -51.93 -0.42 0.33 16 34 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.40 3.36 8.46 -40.82 -0.35 3.01 16 36 H 0.07 0.89 7.79 -51.93 -0.40 0.48 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.12 1.34 7.84 -52.49 -0.41 0.93 16 39 H 0.11 1.54 7.84 -52.49 -0.41 1.13 16 40 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.03 0.62 7.79 -51.92 -0.40 0.22 16 42 H 0.36 8.28 5.52 -40.82 -0.23 8.05 16 43 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 356.89 15.07 5.38 5.38 Total: -1.00 -34.55 356.89 -8.62 -43.17 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -7.26 Total: 5.90 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -1.36 Total: -3.53 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: 0.10 Total: -54.31 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -0.77 Total: -13.72 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.71 Total: 17.10 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.55 -8.62 -43.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699265345.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.964 kcal (2) G-P(sol) polarization free energy of solvation -34.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds