Wall clock time and date at job start Tue Mar 31 2020 05:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47040 * 2 1 4 4 H 1.09003 * 110.55081 * 307.87735 * 3 2 1 5 5 C 1.54997 * 110.61500 * 185.00188 * 3 2 1 6 6 C 1.54812 * 102.08897 * 204.31414 * 5 3 2 7 7 C 1.54098 * 104.18893 * 20.88184 * 6 5 3 8 8 H 1.08990 * 109.87910 * 242.45267 * 7 6 5 9 9 C 1.50703 * 109.87881 * 121.45025 * 7 6 5 10 10 O 1.21288 * 120.00092 * 245.30877 * 9 7 6 11 11 N 1.34780 * 120.00221 * 65.30725 * 9 7 6 12 12 C 1.46494 * 120.00209 * 179.97438 * 11 9 7 13 13 C 1.50696 * 109.47249 * 180.02562 * 12 11 9 14 14 C 1.31003 * 119.99953 * 127.00564 * 13 12 11 15 15 C 1.50702 * 120.00239 * 7.55893 * 14 13 12 16 16 N 1.46500 * 109.46891 * 127.15629 * 15 14 13 17 17 C 1.36933 * 119.99509 * 180.02562 * 16 15 14 18 18 H 1.08007 * 120.00427 * 359.97438 * 17 16 15 19 19 C 1.38819 * 119.99951 * 180.02562 * 17 16 15 20 20 N 1.31618 * 119.99962 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99677 * 359.71837 * 19 17 16 22 22 H 1.48496 * 109.47141 * 90.00157 * 21 19 17 23 23 H 1.48504 * 109.46975 * 210.00579 * 21 19 17 24 24 H 1.48502 * 109.47096 * 330.00453 * 21 19 17 25 25 O 1.43744 * 107.42202 * 1.95505 * 7 6 5 26 26 H 1.09008 * 109.47348 * 59.99868 * 1 2 3 27 27 H 1.08998 * 109.47307 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47173 * 300.00221 * 1 2 3 29 29 H 1.09003 * 109.46877 * 240.00501 * 2 1 3 30 30 H 1.08995 * 109.47318 * 119.99897 * 2 1 3 31 31 H 1.09004 * 110.91159 * 86.12333 * 5 3 2 32 32 H 1.08996 * 110.94284 * 322.53159 * 5 3 2 33 33 H 1.08997 * 110.49141 * 262.20390 * 6 5 3 34 34 H 1.09008 * 110.48532 * 139.55531 * 6 5 3 35 35 H 0.96995 * 119.99056 * 0.02562 * 11 9 7 36 36 H 1.09002 * 109.47446 * 59.99950 * 12 11 9 37 37 H 1.09006 * 109.47303 * 300.00069 * 12 11 9 38 38 H 1.07998 * 119.99823 * 307.00304 * 13 12 11 39 39 H 1.07999 * 119.99862 * 187.56503 * 14 13 12 40 40 H 1.09001 * 109.46704 * 7.15571 * 15 14 13 41 41 H 1.08998 * 109.47188 * 247.16102 * 15 14 13 42 42 H 0.96990 * 120.00074 * 359.97438 * 16 15 14 43 43 H 0.96997 * 119.99527 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5767 2.0122 -0.8056 5 6 3.5844 1.4753 -0.1265 6 6 3.9329 2.8427 0.5103 7 6 2.7068 3.1769 1.3819 8 1 2.2328 4.0893 1.0203 9 6 3.1313 3.3543 2.8170 10 8 2.7441 2.5776 3.6643 11 7 3.9411 4.3759 3.1589 12 6 4.3532 4.5486 4.5540 13 6 5.2491 5.7551 4.6675 14 6 4.9746 6.6953 5.5375 15 6 3.8667 6.4948 6.5393 16 7 4.3788 6.7418 7.8895 17 6 3.5470 6.6186 8.9703 18 1 2.5133 6.3398 8.8273 19 6 4.0319 6.8532 10.2497 20 7 3.2323 6.7353 11.2885 21 14 5.8212 7.3291 10.4975 22 1 5.9520 8.8073 10.4455 23 1 6.2857 6.8371 11.8195 24 1 6.6484 6.7209 9.4245 25 8 1.7902 2.0748 1.2760 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 3.8899 1.4443 -1.1724 32 1 4.0387 0.6582 0.4338 33 1 4.0697 3.5995 -0.2620 34 1 4.8280 2.7593 1.1269 35 1 4.2504 4.9972 2.4813 36 1 4.8935 3.6620 4.8858 37 1 3.4712 4.6915 5.1785 38 1 6.1174 5.8446 4.0317 39 1 5.5421 7.6141 5.5368 40 1 3.4972 5.4715 6.4724 41 1 3.0540 7.1892 6.3262 42 1 5.3071 6.9917 8.0180 43 1 3.5713 6.8988 12.1824 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699265346.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:57 Heat of formation + Delta-G solvation = -52.972716 kcal Electronic energy + Delta-G solvation = -21593.752158 eV Core-core repulsion = 18253.787879 eV Total energy + Delta-G solvation = -3339.964279 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.57137 -38.78995 -36.64994 -34.64701 -33.96366 -33.03991 -32.31714 -30.87190 -29.22322 -26.74400 -25.23731 -24.08720 -22.27286 -22.06023 -21.33905 -20.51264 -19.08867 -17.76690 -17.13631 -16.73952 -16.62644 -15.79447 -15.55892 -14.75930 -14.46034 -14.20665 -14.08911 -13.94932 -13.73740 -13.57973 -13.34532 -13.08507 -12.74259 -12.57455 -12.15933 -12.12050 -11.96060 -11.79680 -11.38631 -11.22920 -11.15825 -10.99530 -10.86146 -10.54070 -10.33019 -10.12220 -9.66626 -9.59042 -9.24955 -9.07388 -8.67036 -7.22247 -5.75865 -3.12244 2.08966 2.54375 2.96224 3.38227 3.40605 3.45948 3.68608 4.06725 4.28302 4.42202 4.54078 4.59764 4.72249 4.84044 4.86812 4.95148 4.97659 5.15462 5.17913 5.25475 5.33200 5.43608 5.52240 5.53830 5.56228 5.63189 5.64037 5.65745 5.78926 5.84581 6.03100 6.05936 6.23613 6.43223 6.46742 6.53316 6.75237 7.01047 7.43116 7.99836 8.17885 8.42650 9.21015 9.92796 10.12282 11.42342 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031890 B = 0.002628 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.801844 B =10651.530539 C =11225.752254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C 0.072 3.928 4 H 0.073 0.927 5 C -0.150 4.150 6 C -0.147 4.147 7 C 0.062 3.938 8 H 0.094 0.906 9 C 0.508 3.492 10 O -0.515 6.515 11 N -0.723 5.723 12 C 0.140 3.860 13 C -0.193 4.193 14 C -0.117 4.117 15 C 0.165 3.835 16 N -0.751 5.751 17 C -0.246 4.246 18 H 0.091 0.909 19 C 0.005 3.995 20 N -0.933 5.933 21 Si 0.886 3.114 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.277 1.277 25 O -0.340 6.340 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.398 0.602 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.044 0.956 41 H 0.037 0.963 42 H 0.362 0.638 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.563 -8.290 -30.125 31.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C 0.015 3.985 4 H 0.091 0.909 5 C -0.188 4.188 6 C -0.185 4.185 7 C 0.000 4.000 8 H 0.112 0.888 9 C 0.292 3.708 10 O -0.389 6.389 11 N -0.377 5.377 12 C 0.018 3.982 13 C -0.213 4.213 14 C -0.137 4.137 15 C 0.039 3.961 16 N -0.397 5.397 17 C -0.376 4.376 18 H 0.109 0.891 19 C -0.191 4.191 20 N -0.580 5.580 21 Si 0.716 3.284 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.203 1.203 25 O -0.258 6.258 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.232 0.768 36 H 0.090 0.910 37 H 0.109 0.891 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.194 0.806 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.884 -8.998 -29.175 30.589 hybrid contribution 1.711 0.890 -0.130 1.933 sum 3.595 -8.108 -29.304 30.617 Atomic orbital electron populations 1.21746 0.95093 1.01752 1.02363 1.21554 0.96944 0.94097 1.02897 1.23327 0.94087 0.94691 0.86410 0.90935 1.23186 0.96218 0.97496 1.01850 1.22938 0.97931 0.98369 0.99292 1.22585 0.91420 0.92780 0.93224 0.88838 1.20444 0.78920 0.81180 0.90249 1.90764 1.53774 1.43206 1.51203 1.45929 1.50772 1.30196 1.10761 1.20580 0.98990 0.96943 0.81719 1.22621 1.00032 0.95765 1.02862 1.23324 0.98042 0.97212 0.95110 1.19983 0.93236 0.99162 0.83697 1.42610 1.10250 1.85276 1.01522 1.19076 0.94245 1.39908 0.84379 0.89090 1.24685 0.97477 1.01648 0.95322 1.69705 1.34611 1.55689 0.98018 0.86522 0.86326 0.78391 0.77155 1.21053 1.21654 1.20296 1.89090 1.55833 1.44091 1.36825 0.92921 0.92636 0.91764 0.90626 0.90739 0.89800 0.90065 0.89513 0.89823 0.76811 0.90972 0.89114 0.86955 0.86880 0.93875 0.94496 0.80562 0.93002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.86 37.16 0.37 -0.80 16 2 C -0.12 -0.88 5.70 -26.73 -0.15 -1.04 16 3 C 0.07 0.58 3.28 -25.68 -0.08 0.50 16 4 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 5 C -0.15 -0.97 6.59 -24.72 -0.16 -1.13 16 6 C -0.15 -0.96 6.62 -25.20 -0.17 -1.13 16 7 C 0.06 0.60 3.84 -27.31 -0.10 0.50 16 8 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 9 C 0.51 6.79 6.95 -10.98 -0.08 6.71 16 10 O -0.52 -9.67 16.53 -14.02 -0.23 -9.90 16 11 N -0.72 -7.97 5.53 -61.47 -0.34 -8.31 16 12 C 0.14 1.92 5.76 -5.20 -0.03 1.89 16 13 C -0.19 -2.40 9.63 -36.03 -0.35 -2.75 16 14 C -0.12 -1.75 9.63 -36.03 -0.35 -2.10 16 15 C 0.17 3.25 6.34 -5.19 -0.03 3.21 16 16 N -0.75 -18.30 5.40 -61.08 -0.33 -18.63 16 17 C -0.25 -7.18 10.47 -15.06 -0.16 -7.33 16 18 H 0.09 2.84 8.06 -52.48 -0.42 2.41 16 19 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 20 N -0.93 -29.85 13.97 55.49 0.78 -29.08 16 21 Si 0.89 22.38 27.73 -169.99 -4.71 17.67 16 22 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 23 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 24 H -0.28 -6.58 6.53 56.52 0.37 -6.21 16 25 O -0.34 -4.14 10.32 -54.80 -0.57 -4.71 16 26 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.62 8.06 -51.93 -0.42 0.20 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.59 8.06 -51.93 -0.42 0.17 16 33 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 0.58 7.69 -51.92 -0.40 0.18 16 35 H 0.40 2.97 8.46 -40.82 -0.35 2.63 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.09 1.49 5.29 -51.93 -0.27 1.21 16 38 H 0.11 1.10 8.06 -52.49 -0.42 0.67 16 39 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 40 H 0.04 0.88 5.30 -51.93 -0.28 0.60 16 41 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.36 8.51 5.53 -40.82 -0.23 8.29 16 43 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 LS Contribution 352.67 15.07 5.31 5.31 Total: -1.00 -36.18 352.67 -8.50 -44.68 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -7.02 Total: 6.39 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -1.39 Total: -3.43 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: 0.11 Total: -56.02 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.80 Total: -14.61 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.71 Total: 17.67 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -36.18 -8.50 -44.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699265346.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.292 kcal (2) G-P(sol) polarization free energy of solvation -36.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds