Wall clock time and date at job start Tue Mar 31 2020 05:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50699 * 119.99835 * 2 1 4 4 C 1.53005 * 109.46920 * 120.00228 * 3 2 1 5 5 O 1.42901 * 109.47292 * 0.02562 * 3 2 1 6 6 C 1.52992 * 109.47360 * 240.00246 * 3 2 1 7 7 C 1.50699 * 109.47254 * 57.25772 * 6 3 2 8 8 O 1.21280 * 119.99982 * 3.23478 * 7 6 3 9 9 N 1.34776 * 120.00333 * 183.22737 * 7 6 3 10 10 C 1.46501 * 120.00455 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47299 * 185.75344 * 10 9 7 12 12 H 1.08998 * 110.00182 * 298.52004 * 11 10 9 13 13 C 1.54331 * 109.99065 * 177.48213 * 11 10 9 14 14 C 1.55149 * 103.02298 * 218.66701 * 13 11 10 15 15 C 1.54910 * 101.58086 * 35.30439 * 14 13 11 16 16 N 1.47022 * 109.88302 * 59.61890 * 11 10 9 17 17 C 1.36940 * 125.64569 * 298.39223 * 16 11 10 18 18 H 1.08000 * 119.99669 * 334.62017 * 17 16 11 19 19 C 1.38814 * 120.00190 * 154.61892 * 17 16 11 20 20 N 1.31625 * 119.99427 * 335.41268 * 19 17 16 21 21 Si 1.86796 * 120.00012 * 155.41111 * 19 17 16 22 22 H 1.48500 * 109.46905 * 269.99636 * 21 19 17 23 23 H 1.48501 * 109.46821 * 150.00606 * 21 19 17 24 24 H 1.48496 * 109.47309 * 30.00030 * 21 19 17 25 25 H 1.07998 * 120.00077 * 359.97438 * 1 2 3 26 26 H 1.07998 * 119.99746 * 179.97438 * 1 2 3 27 27 H 1.07998 * 120.00077 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.47137 * 184.94212 * 4 3 2 29 29 H 1.09007 * 109.47016 * 304.93747 * 4 3 2 30 30 H 1.08993 * 109.46907 * 64.93735 * 4 3 2 31 31 H 0.96699 * 114.00083 * 300.00380 * 5 3 2 32 32 H 1.09002 * 109.47120 * 297.25820 * 6 3 2 33 33 H 1.09005 * 109.47407 * 177.25879 * 6 3 2 34 34 H 0.97006 * 119.99704 * 0.02562 * 9 7 6 35 35 H 1.09005 * 109.46494 * 65.75219 * 10 9 7 36 36 H 1.09000 * 109.47223 * 305.76178 * 10 9 7 37 37 H 1.09003 * 110.85127 * 100.19893 * 13 11 10 38 38 H 1.09002 * 110.66959 * 337.05106 * 13 11 10 39 39 H 1.09002 * 111.00387 * 277.23432 * 14 13 11 40 40 H 1.09000 * 111.00916 * 153.38066 * 14 13 11 41 41 H 1.09004 * 110.36846 * 204.15055 * 15 14 13 42 42 H 1.09008 * 110.36247 * 81.83757 * 15 14 13 43 43 H 0.96998 * 119.99943 * 353.96751 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9432 1.3861 1.2493 5 8 1.1349 2.3913 0.0006 6 6 2.9430 1.3863 -1.2492 7 6 2.0842 1.2389 -2.4787 8 8 0.8802 1.1431 -2.3694 9 7 2.6541 1.2137 -3.6998 10 6 1.8193 1.0699 -4.8951 11 6 2.7140 0.9264 -6.1278 12 1 3.3262 1.8199 -6.2502 13 6 1.8473 0.7108 -7.3865 14 6 2.6628 -0.3298 -8.1984 15 6 3.2640 -1.2034 -7.0691 16 7 3.5769 -0.2553 -5.9846 17 6 4.5122 -0.4462 -5.0028 18 1 4.9622 0.4047 -4.5130 19 6 4.8820 -1.7332 -4.6371 20 7 4.0551 -2.7375 -4.8378 21 14 6.5529 -2.0399 -3.8604 22 1 7.5490 -2.3231 -4.9248 23 1 6.4657 -3.2035 -2.9419 24 1 6.9723 -0.8371 -3.0973 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 3.4205 2.3650 1.2947 29 1 2.3277 1.2405 2.1371 30 1 3.7078 0.6106 1.2061 31 1 0.5432 2.4033 -0.7642 32 1 3.6832 0.5864 -1.2250 33 1 3.4508 2.3505 -1.2741 34 1 3.6172 1.2901 -3.7872 35 1 1.1875 1.9514 -5.0051 36 1 1.1923 0.1838 -4.7959 37 1 1.7401 1.6393 -7.9474 38 1 0.8703 0.3098 -7.1168 39 1 3.4486 0.1552 -8.7774 40 1 2.0115 -0.9194 -8.8437 41 1 4.1719 -1.6978 -7.4146 42 1 2.5352 -1.9401 -6.7307 43 1 3.1557 -2.5683 -5.1592 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753105608.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:12 Heat of formation + Delta-G solvation = -52.449263 kcal Electronic energy + Delta-G solvation = -23659.104807 eV Core-core repulsion = 20319.163227 eV Total energy + Delta-G solvation = -3339.941580 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.82928 -38.19737 -37.09073 -33.85776 -32.92578 -32.70289 -31.12140 -29.56077 -29.04401 -27.70344 -24.98151 -23.56409 -22.12094 -20.65085 -19.80874 -19.72584 -19.24856 -17.66563 -16.76866 -16.30417 -15.80026 -15.53396 -14.89167 -14.46671 -14.27960 -14.02718 -13.79740 -13.23161 -13.11437 -12.93316 -12.39369 -12.30255 -12.12410 -11.99396 -11.83775 -11.66022 -11.48861 -11.20482 -10.80557 -10.78341 -10.64008 -10.52215 -10.31553 -10.18807 -10.06149 -9.86647 -9.60685 -9.47575 -8.80208 -8.55700 -8.28542 -7.01448 -6.16650 -3.34177 2.67146 3.16888 3.39054 3.42777 3.58017 3.82287 4.45859 4.47040 4.95852 5.00021 5.08291 5.19982 5.24964 5.31585 5.43311 5.57587 5.62924 5.64858 5.67396 5.77069 5.89305 5.95619 5.96212 6.00236 6.13304 6.15979 6.19765 6.30084 6.32948 6.39963 6.45247 6.87396 6.90017 6.92649 7.02095 7.09841 7.14988 7.65755 7.93967 8.19832 8.35945 8.82016 8.91595 9.67931 10.29056 11.11841 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015114 B = 0.006286 C = 0.004973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.184699 B = 4453.087312 C = 5629.553635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.184 4.184 3 C 0.180 3.820 4 C -0.134 4.134 5 O -0.565 6.565 6 C -0.168 4.168 7 C 0.511 3.489 8 O -0.562 6.562 9 N -0.696 5.696 10 C 0.118 3.882 11 C 0.143 3.857 12 H 0.039 0.961 13 C -0.122 4.122 14 C -0.136 4.136 15 C 0.142 3.858 16 N -0.592 5.592 17 C -0.335 4.335 18 H 0.057 0.943 19 C -0.018 4.018 20 N -0.908 5.908 21 Si 1.064 2.936 22 H -0.292 1.292 23 H -0.289 1.289 24 H -0.291 1.291 25 H 0.099 0.901 26 H 0.090 0.910 27 H 0.109 0.891 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.386 0.614 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.408 0.592 35 H 0.046 0.954 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.047 0.953 42 H 0.027 0.973 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.391 7.773 3.493 8.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.202 4.202 3 C 0.139 3.861 4 C -0.191 4.191 5 O -0.376 6.376 6 C -0.209 4.209 7 C 0.298 3.702 8 O -0.443 6.443 9 N -0.348 5.348 10 C -0.008 4.008 11 C 0.035 3.965 12 H 0.057 0.943 13 C -0.161 4.161 14 C -0.174 4.174 15 C 0.016 3.984 16 N -0.318 5.318 17 C -0.463 4.463 18 H 0.075 0.925 19 C -0.222 4.222 20 N -0.547 5.547 21 Si 0.894 3.106 22 H -0.220 1.220 23 H -0.216 1.216 24 H -0.217 1.217 25 H 0.117 0.883 26 H 0.108 0.892 27 H 0.127 0.873 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.239 0.761 32 H 0.122 0.878 33 H 0.115 0.885 34 H 0.247 0.753 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.045 0.955 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.807 6.647 4.716 8.348 hybrid contribution -0.811 0.859 -1.253 1.722 sum -2.619 7.506 3.463 8.671 Atomic orbital electron populations 1.23539 0.95956 1.01299 0.98442 1.23263 0.96838 0.97969 1.02115 1.19758 0.88009 0.85137 0.93227 1.21707 0.98774 1.02508 0.96109 1.86364 1.51084 1.48967 1.51234 1.22406 0.99970 1.04926 0.93551 1.20450 0.88626 0.76184 0.84954 1.90549 1.15131 1.51955 1.86712 1.46105 1.11967 1.71519 1.05195 1.21869 0.93621 0.99725 0.85594 1.21321 0.90823 0.92631 0.91715 0.94291 1.22489 0.98492 0.99023 0.96078 1.22785 0.98910 0.97931 0.97814 1.21553 0.97862 0.92071 0.86879 1.44588 1.41063 1.17409 1.28698 1.19461 1.16366 0.93791 1.16672 0.92504 1.25788 1.04830 0.92339 0.99278 1.70719 1.07136 1.33674 1.43160 0.83530 0.75400 0.75412 0.76281 1.21958 1.21551 1.21729 0.88284 0.89173 0.87345 0.91781 0.91782 0.90949 0.76110 0.87850 0.88520 0.75250 0.93553 0.92204 0.91804 0.91622 0.91872 0.91976 0.93423 0.95536 0.91655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 12.64 29.01 0.37 -2.07 16 2 C -0.18 -2.92 7.46 -36.03 -0.27 -3.18 16 3 C 0.18 2.67 1.08 -91.77 -0.10 2.57 16 4 C -0.13 -1.63 8.82 37.16 0.33 -1.30 16 5 O -0.57 -8.93 11.93 -52.63 -0.63 -9.56 16 6 C -0.17 -2.56 4.98 -27.89 -0.14 -2.70 16 7 C 0.51 9.39 7.33 -10.99 -0.08 9.31 16 8 O -0.56 -11.22 11.93 -11.84 -0.14 -11.36 16 9 N -0.70 -13.20 4.82 -60.29 -0.29 -13.49 16 10 C 0.12 2.26 5.21 -4.04 -0.02 2.24 16 11 C 0.14 2.72 3.37 -66.95 -0.23 2.49 16 12 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 13 C -0.12 -1.98 6.48 -24.90 -0.16 -2.14 16 14 C -0.14 -2.31 7.09 -24.59 -0.17 -2.49 16 15 C 0.14 3.12 5.50 -2.54 -0.01 3.10 16 16 N -0.59 -13.57 2.94 -162.57 -0.48 -14.05 16 17 C -0.33 -8.36 8.16 -15.06 -0.12 -8.48 16 18 H 0.06 1.38 6.46 -52.49 -0.34 1.04 16 19 C -0.02 -0.49 5.19 -17.43 -0.09 -0.58 16 20 N -0.91 -26.12 13.05 55.49 0.72 -25.39 16 21 Si 1.06 23.81 29.98 -169.99 -5.10 18.71 16 22 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -6.00 7.11 56.52 0.40 -5.60 16 25 H 0.10 1.53 6.41 -52.49 -0.34 1.19 16 26 H 0.09 1.31 8.06 -52.49 -0.42 0.89 16 27 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.39 6.23 5.74 45.56 0.26 6.49 16 32 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 33 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.41 7.79 5.73 -40.82 -0.23 7.56 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 1.31 8.11 -51.93 -0.42 0.89 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.07 1.04 7.84 -51.93 -0.41 0.63 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.03 0.64 6.69 -51.92 -0.35 0.29 16 43 H 0.27 7.97 6.08 -40.82 -0.25 7.72 16 LS Contribution 338.01 15.07 5.09 5.09 Total: -1.00 -29.35 338.01 -7.88 -37.23 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: -6.36 Total: 16.03 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -0.70 Total: -3.22 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: -0.04 Total: -52.93 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.77 Total: -20.91 kcal Atomic # 14 Polarization: 23.81 SS G_CDS: -5.10 Total: 18.71 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.35 -7.88 -37.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753105608.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.218 kcal (2) G-P(sol) polarization free energy of solvation -29.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds