Wall clock time and date at job start Tue Mar 31 2020 05:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50697 * 120.00199 * 2 1 4 4 C 1.53005 * 109.47477 * 240.00181 * 3 2 1 5 5 O 1.42903 * 109.47244 * 359.97438 * 3 2 1 6 6 C 1.53001 * 109.47442 * 119.99795 * 3 2 1 7 7 C 1.50701 * 109.47237 * 179.97438 * 6 3 2 8 8 O 1.21276 * 119.99971 * 0.02562 * 7 6 3 9 9 N 1.34776 * 119.99724 * 180.02562 * 7 6 3 10 10 C 1.46500 * 119.99797 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.47038 * 185.66485 * 10 9 7 12 12 H 1.09008 * 109.99275 * 304.83391 * 11 10 9 13 13 C 1.54306 * 109.77749 * 65.99151 * 11 10 9 14 14 C 1.55157 * 102.86371 * 141.88458 * 13 11 10 15 15 C 1.54904 * 101.58278 * 324.30522 * 14 13 11 16 16 N 1.47022 * 109.88008 * 183.74371 * 11 10 9 17 17 C 1.36942 * 125.65203 * 61.67578 * 16 11 10 18 18 H 1.07996 * 119.99651 * 14.39947 * 17 16 11 19 19 C 1.38805 * 119.99782 * 194.39434 * 17 16 11 20 20 N 1.31617 * 120.00488 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99825 * 179.72458 * 19 17 16 22 22 H 1.48496 * 109.47167 * 89.99900 * 21 19 17 23 23 H 1.48500 * 109.47292 * 210.00591 * 21 19 17 24 24 H 1.48506 * 109.47094 * 330.00120 * 21 19 17 25 25 H 1.07994 * 120.00423 * 180.02562 * 1 2 3 26 26 H 1.08005 * 119.99767 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.00134 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.46600 * 300.00429 * 4 3 2 29 29 H 1.09001 * 109.46956 * 59.99378 * 4 3 2 30 30 H 1.08994 * 109.47651 * 179.97438 * 4 3 2 31 31 H 0.96707 * 113.99653 * 60.00033 * 5 3 2 32 32 H 1.09008 * 109.46955 * 60.00429 * 6 3 2 33 33 H 1.08995 * 109.47309 * 300.00168 * 6 3 2 34 34 H 0.97000 * 120.00495 * 0.02562 * 9 7 6 35 35 H 1.09005 * 109.47299 * 65.66406 * 10 9 7 36 36 H 1.09003 * 109.47408 * 305.66056 * 10 9 7 37 37 H 1.08995 * 110.92416 * 23.47080 * 13 11 10 38 38 H 1.09004 * 110.58998 * 260.14329 * 13 11 10 39 39 H 1.09000 * 111.00630 * 206.22250 * 14 13 11 40 40 H 1.09007 * 111.03368 * 82.39118 * 14 13 11 41 41 H 1.09003 * 110.36879 * 278.16891 * 15 14 13 42 42 H 1.09005 * 110.46059 * 155.89147 * 15 14 13 43 43 H 0.97004 * 119.99726 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3862 -1.2493 5 8 1.1349 2.3913 -0.0006 6 6 2.9431 1.3862 1.2492 7 6 3.6971 2.6910 1.2489 8 8 3.5455 3.4787 0.3393 9 7 4.5399 2.9825 2.2594 10 6 5.2725 4.2512 2.2594 11 6 6.2563 4.2720 3.4309 12 1 5.7273 4.0839 4.3653 13 6 7.3460 3.2006 3.2168 14 6 8.6266 3.9001 3.7440 15 6 8.3804 5.3669 3.3112 16 7 6.9324 5.5761 3.4929 17 6 6.3194 6.7843 3.6922 18 1 5.3005 6.8205 4.0483 19 6 7.0078 7.9623 3.4368 20 7 8.2494 7.9181 3.0025 21 14 6.1690 9.6103 3.7015 22 1 6.4035 10.0670 5.0949 23 1 6.7268 10.6076 2.7531 24 1 4.7097 9.4664 3.4668 25 1 -0.5400 -0.9352 0.0004 26 1 -0.5400 0.9354 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 3.6514 0.5576 -1.2493 29 1 2.3164 1.3284 -2.1392 30 1 3.4878 2.3303 -1.2495 31 1 0.5433 2.4034 0.7643 32 1 3.6515 0.5576 1.2492 33 1 2.3165 1.3285 2.1392 34 1 4.6615 2.3523 2.9867 35 1 4.5686 5.0772 2.3613 36 1 5.8206 4.3543 1.3228 37 1 7.4481 2.9551 2.1597 38 1 7.1257 2.3076 3.8017 39 1 9.5182 3.4957 3.2649 40 1 8.6980 3.8196 4.8288 41 1 8.6554 5.5052 2.2655 42 1 8.9450 6.0511 3.9448 43 1 8.7305 8.7414 2.8244 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753105609.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:16 Heat of formation + Delta-G solvation = -44.340483 kcal Electronic energy + Delta-G solvation = -22727.455156 eV Core-core repulsion = 19387.865198 eV Total energy + Delta-G solvation = -3339.589957 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.98924 -38.20113 -37.33230 -34.16702 -33.12963 -32.47860 -31.42286 -29.75862 -29.00332 -27.56326 -24.84825 -23.88597 -22.61111 -20.43224 -20.02138 -19.79356 -19.43322 -17.43634 -16.76258 -16.28473 -15.97657 -15.61984 -15.14209 -14.68214 -14.45949 -14.18132 -13.81406 -13.56367 -13.05478 -12.88748 -12.37919 -12.24037 -12.09244 -11.91746 -11.86368 -11.65646 -11.53779 -11.25721 -11.17762 -10.93889 -10.77785 -10.27990 -10.22334 -10.10255 -9.92533 -9.83801 -9.72100 -9.68109 -9.29626 -8.61911 -8.52560 -6.83760 -5.76493 -3.13160 1.95040 2.95091 3.39414 3.46005 3.47691 3.50330 4.17859 4.48106 4.57019 4.62430 4.84751 5.00547 5.17423 5.34386 5.36019 5.41138 5.52192 5.53017 5.57852 5.62877 5.80688 5.80835 5.97530 6.07146 6.14506 6.23827 6.24626 6.36430 6.45566 6.49883 6.56021 6.64003 6.76447 6.85607 7.08217 7.51308 7.60894 7.62186 7.79047 7.85906 8.25879 8.60167 9.17681 9.78346 10.45535 11.35552 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022020 B = 0.003832 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.264244 B = 7304.733759 C = 8140.054832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.185 4.185 3 C 0.177 3.823 4 C -0.148 4.148 5 O -0.537 6.537 6 C -0.166 4.166 7 C 0.505 3.495 8 O -0.520 6.520 9 N -0.727 5.727 10 C 0.110 3.890 11 C 0.152 3.848 12 H 0.036 0.964 13 C -0.125 4.125 14 C -0.149 4.149 15 C 0.172 3.828 16 N -0.589 5.589 17 C -0.234 4.234 18 H 0.075 0.925 19 C -0.001 4.001 20 N -0.916 5.916 21 Si 0.911 3.089 22 H -0.288 1.288 23 H -0.289 1.289 24 H -0.279 1.279 25 H 0.098 0.902 26 H 0.105 0.895 27 H 0.115 0.885 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.096 0.904 31 H 0.367 0.633 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.393 0.607 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.026 0.974 42 H 0.072 0.928 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.246 -18.143 -1.476 20.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.203 4.203 3 C 0.135 3.865 4 C -0.205 4.205 5 O -0.341 6.341 6 C -0.207 4.207 7 C 0.290 3.710 8 O -0.396 6.396 9 N -0.379 5.379 10 C -0.015 4.015 11 C 0.044 3.956 12 H 0.054 0.946 13 C -0.163 4.163 14 C -0.188 4.188 15 C 0.047 3.953 16 N -0.314 5.314 17 C -0.362 4.362 18 H 0.093 0.907 19 C -0.198 4.198 20 N -0.562 5.562 21 Si 0.741 3.259 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.205 1.205 25 H 0.117 0.883 26 H 0.123 0.877 27 H 0.133 0.867 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.115 0.885 31 H 0.214 0.786 32 H 0.117 0.883 33 H 0.110 0.890 34 H 0.226 0.774 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.044 0.956 42 H 0.090 0.910 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.955 -17.140 -2.733 19.530 hybrid contribution -0.660 0.280 1.022 1.248 sum -9.615 -16.860 -1.711 19.484 Atomic orbital electron populations 1.23862 0.96068 1.02334 0.99807 1.23648 0.96752 0.98883 1.01031 1.19848 0.88020 0.83882 0.94732 1.21946 0.98840 1.04514 0.95174 1.86754 1.49995 1.48909 1.48465 1.22398 1.00434 0.97456 1.00370 1.20348 0.79918 0.88191 0.82511 1.90693 1.63857 1.49863 1.35158 1.46182 1.44831 1.22087 1.24799 1.22184 0.94690 0.83752 1.00838 1.21123 0.92133 0.88044 0.94344 0.94639 1.22595 0.96416 0.96856 1.00441 1.23009 0.96136 0.99701 0.99923 1.21455 0.84931 0.90024 0.98861 1.44476 1.02132 1.00636 1.84137 1.18976 0.97650 0.81884 1.37722 0.90682 1.24909 0.96703 0.97969 1.00260 1.69936 1.09762 1.26343 1.50121 0.86146 0.78829 0.83605 0.77356 1.21543 1.21559 1.20496 0.88338 0.87696 0.86721 0.91977 0.92362 0.88496 0.78609 0.88295 0.88990 0.77409 0.91672 0.91727 0.91828 0.92497 0.92370 0.92338 0.95607 0.90985 0.93601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.44 13.93 29.02 0.40 -1.04 16 2 C -0.18 -1.57 8.77 -36.03 -0.32 -1.89 16 3 C 0.18 1.95 0.94 -91.77 -0.09 1.86 16 4 C -0.15 -1.82 8.50 37.16 0.32 -1.51 16 5 O -0.54 -6.93 10.85 -53.48 -0.58 -7.51 16 6 C -0.17 -1.67 4.93 -27.88 -0.14 -1.81 16 7 C 0.51 7.52 7.39 -10.99 -0.08 7.44 16 8 O -0.52 -10.12 12.95 -12.69 -0.16 -10.29 16 9 N -0.73 -10.55 5.34 -60.29 -0.32 -10.87 16 10 C 0.11 2.13 5.09 -4.04 -0.02 2.11 16 11 C 0.15 2.98 3.20 -66.96 -0.21 2.76 16 12 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 13 C -0.13 -2.06 6.16 -24.91 -0.15 -2.21 16 14 C -0.15 -2.71 7.08 -24.59 -0.17 -2.88 16 15 C 0.17 4.10 5.42 -2.53 -0.01 4.09 16 16 N -0.59 -14.64 3.13 -162.58 -0.51 -15.15 16 17 C -0.23 -6.43 9.74 -15.06 -0.15 -6.58 16 18 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 19 C 0.00 -0.03 5.47 -17.43 -0.10 -0.13 16 20 N -0.92 -26.76 10.58 55.49 0.59 -26.17 16 21 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H 0.10 0.62 8.06 -52.49 -0.42 0.20 16 26 H 0.10 0.83 6.41 -52.48 -0.34 0.50 16 27 H 0.11 0.80 8.06 -52.49 -0.42 0.38 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.10 1.52 5.51 -51.93 -0.29 1.24 16 31 H 0.37 3.43 8.05 45.56 0.37 3.79 16 32 H 0.10 0.78 8.14 -51.92 -0.42 0.35 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.39 4.42 8.39 -40.82 -0.34 4.08 16 35 H 0.06 1.45 7.88 -51.93 -0.41 1.04 16 36 H 0.06 1.40 8.04 -51.93 -0.42 0.99 16 37 H 0.06 1.04 7.79 -51.93 -0.40 0.64 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.06 1.03 8.14 -51.92 -0.42 0.60 16 41 H 0.03 0.67 8.06 -51.93 -0.42 0.25 16 42 H 0.07 1.91 6.93 -51.93 -0.36 1.55 16 43 H 0.25 7.21 8.31 -40.82 -0.34 6.88 16 LS Contribution 344.79 15.07 5.20 5.20 Total: -1.00 -33.09 344.79 -7.92 -41.00 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -6.38 Total: 6.37 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: -0.72 Total: 0.21 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: -0.24 Total: -52.20 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.74 Total: -17.80 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.09 -7.92 -41.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753105609.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.338 kcal (2) G-P(sol) polarization free energy of solvation -33.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds