Wall clock time and date at job start Tue Mar 31 2020 06:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47138 * 2 1 4 4 N 1.46504 * 109.47015 * 180.02562 * 3 2 1 5 5 C 1.36935 * 120.00144 * 95.92834 * 4 3 2 6 6 H 1.07995 * 120.00037 * 170.22531 * 5 4 3 7 7 C 1.38811 * 119.99923 * 350.21988 * 5 4 3 8 8 N 1.31620 * 120.00263 * 332.51859 * 7 5 4 9 9 Si 1.86793 * 119.99874 * 152.51118 * 7 5 4 10 10 H 1.48500 * 109.47673 * 265.27677 * 9 7 5 11 11 H 1.48500 * 109.47410 * 145.27459 * 9 7 5 12 12 H 1.48502 * 109.47247 * 25.27962 * 9 7 5 13 13 C 1.46498 * 119.99751 * 275.92678 * 4 3 2 14 14 C 1.53000 * 109.47416 * 270.00044 * 13 4 3 15 15 N 1.46499 * 109.47241 * 180.02562 * 14 13 4 16 16 C 1.34779 * 119.99630 * 179.97438 * 15 14 13 17 17 O 1.21277 * 120.00370 * 359.97438 * 16 15 14 18 18 C 1.50703 * 119.99857 * 179.97438 * 16 15 14 19 19 C 1.53000 * 119.80808 * 250.98462 * 18 16 15 20 20 C 1.53003 * 60.65463 * 247.68693 * 19 18 16 21 21 H 1.08995 * 120.24592 * 112.13510 * 20 19 18 22 22 C 1.54475 * 118.06744 * 269.59532 * 20 19 18 23 23 O 1.44426 * 104.80520 * 86.82145 * 22 20 19 24 24 C 1.43864 * 105.56970 * 319.94453 * 23 22 20 25 25 H 1.08995 * 109.47141 * 300.00163 * 1 2 3 26 26 H 1.09009 * 109.46793 * 59.99695 * 1 2 3 27 27 H 1.08996 * 109.47085 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46799 * 240.00125 * 2 1 3 29 29 H 1.08996 * 109.47018 * 120.00111 * 2 1 3 30 30 H 1.09001 * 109.47174 * 60.00355 * 3 2 1 31 31 H 1.08996 * 109.47256 * 299.99965 * 3 2 1 32 32 H 0.97000 * 120.00059 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.47712 * 30.00272 * 13 4 3 34 34 H 1.09001 * 109.47161 * 150.00257 * 13 4 3 35 35 H 1.08999 * 109.46822 * 299.99961 * 14 13 4 36 36 H 1.09001 * 109.47247 * 59.99721 * 14 13 4 37 37 H 0.96997 * 119.99948 * 359.97438 * 15 14 13 38 38 H 1.08999 * 117.43273 * 355.36355 * 19 18 16 39 39 H 1.09006 * 117.42999 * 140.01077 * 19 18 16 40 40 H 1.08998 * 110.37367 * 205.65643 * 22 20 19 41 41 H 1.09003 * 110.37091 * 327.99454 * 22 20 19 42 42 H 1.09000 * 109.55722 * 281.16994 * 24 23 22 43 43 H 1.08998 * 110.92254 * 159.01504 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1893 1.5651 -1.1804 6 1 5.2575 1.7237 -1.1712 7 6 3.5098 1.4854 -2.3883 8 7 2.3959 0.7894 -2.4721 9 14 4.1764 2.3662 -3.8946 10 1 3.5286 3.6969 -4.0172 11 1 3.8861 1.5608 -5.1079 12 1 5.6446 2.5414 -3.7564 13 6 4.2380 1.3112 1.2610 14 6 4.4933 2.7003 1.8495 15 7 5.2268 2.5691 3.1108 16 6 5.5646 3.6697 3.8115 17 8 5.2617 4.7687 3.3977 18 6 6.3186 3.5348 5.1093 19 6 5.6127 3.8327 6.4336 20 6 6.7331 4.7588 5.9563 21 1 6.5085 5.7813 5.6529 22 6 8.1785 4.4381 6.3971 23 8 8.6688 3.5084 5.4065 24 6 7.5676 2.6258 5.1268 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 1.9209 0.7341 -3.3161 33 1 3.6493 0.7216 1.9637 34 1 5.1904 0.8137 1.0779 35 1 5.0821 3.2899 1.1468 36 1 3.5410 3.1980 2.0326 37 1 5.4694 1.6901 3.4416 38 1 4.5921 4.2124 6.3843 39 1 5.8287 3.1762 7.2766 40 1 8.7843 5.3442 6.3998 41 1 8.1804 3.9764 7.3845 42 1 7.4850 1.8827 5.9200 43 1 7.6955 2.1380 4.1605 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753143399.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:09 Heat of formation + Delta-G solvation = -25.577565 kcal Electronic energy + Delta-G solvation = -22445.043064 eV Core-core repulsion = 19106.266728 eV Total energy + Delta-G solvation = -3338.776336 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.99211 -38.73081 -36.54438 -34.93179 -34.45519 -31.98579 -31.45137 -29.39211 -27.78194 -25.70623 -25.51502 -24.11136 -22.44744 -21.36600 -21.17579 -19.95104 -19.42235 -17.64433 -16.70139 -16.25138 -15.74242 -15.59805 -15.01069 -14.89410 -14.77088 -14.17078 -13.86885 -13.69712 -13.36321 -13.00513 -12.96294 -12.68642 -12.39816 -12.12228 -11.80349 -11.54695 -11.27017 -10.99768 -10.93030 -10.78981 -10.69625 -10.52399 -10.40486 -10.14048 -10.02552 -9.97687 -9.77446 -9.58907 -9.19991 -8.75792 -8.37533 -6.93571 -5.80700 -3.11346 2.52273 3.12237 3.29536 3.40904 3.49061 3.50721 3.72326 4.09239 4.20318 4.49034 4.63097 4.69901 4.74950 5.01264 5.27181 5.27821 5.33297 5.35348 5.43890 5.51587 5.54884 5.78001 5.81250 5.86836 6.15885 6.19783 6.23497 6.40606 6.50294 6.54672 6.61216 6.68410 6.82350 6.92022 7.12019 7.24365 7.64349 7.68838 7.74518 8.10644 8.30202 8.37776 9.20650 9.82295 10.26972 11.22787 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021277 B = 0.003661 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.658305 B = 7645.440003 C = 8429.436277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.131 4.131 3 C 0.174 3.826 4 N -0.592 5.592 5 C -0.259 4.259 6 H 0.074 0.926 7 C 0.004 3.996 8 N -0.888 5.888 9 Si 0.891 3.109 10 H -0.289 1.289 11 H -0.293 1.293 12 H -0.280 1.280 13 C 0.144 3.856 14 C 0.095 3.905 15 N -0.717 5.717 16 C 0.555 3.445 17 O -0.539 6.539 18 C -0.209 4.209 19 C -0.107 4.107 20 C -0.161 4.161 21 H 0.132 0.868 22 C 0.073 3.927 23 O -0.368 6.368 24 C 0.087 3.913 25 H 0.030 0.970 26 H 0.050 0.950 27 H 0.033 0.967 28 H 0.105 0.895 29 H 0.017 0.983 30 H 0.004 0.996 31 H 0.081 0.919 32 H 0.252 0.748 33 H 0.042 0.958 34 H 0.051 0.949 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.397 0.603 38 H 0.110 0.890 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.572 1.520 18.149 19.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.170 4.170 3 C 0.049 3.951 4 N -0.313 5.313 5 C -0.387 4.387 6 H 0.092 0.908 7 C -0.194 4.194 8 N -0.533 5.533 9 Si 0.721 3.279 10 H -0.216 1.216 11 H -0.220 1.220 12 H -0.206 1.206 13 C 0.015 3.985 14 C -0.031 4.031 15 N -0.367 5.367 16 C 0.339 3.661 17 O -0.416 6.416 18 C -0.213 4.213 19 C -0.144 4.144 20 C -0.180 4.180 21 H 0.149 0.851 22 C -0.003 4.003 23 O -0.287 6.287 24 C 0.010 3.990 25 H 0.049 0.951 26 H 0.070 0.930 27 H 0.053 0.947 28 H 0.123 0.877 29 H 0.035 0.965 30 H 0.022 0.978 31 H 0.099 0.901 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.230 0.770 38 H 0.128 0.872 39 H 0.123 0.877 40 H 0.118 0.882 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.467 2.258 17.528 18.499 hybrid contribution 0.072 0.072 -0.680 0.687 sum 5.539 2.330 16.849 17.888 Atomic orbital electron populations 1.21627 0.98548 0.99319 1.00024 1.22150 0.92818 1.00481 1.01572 1.20763 0.81722 0.94501 0.98081 1.44034 1.01770 1.84523 1.00972 1.19244 0.92699 1.43464 0.83314 0.90822 1.24682 0.97813 0.99644 0.97214 1.70153 1.19532 1.38602 1.25006 0.86430 0.78519 0.80163 0.82752 1.21582 1.22031 1.20579 1.20791 0.96585 0.92078 0.89020 1.22455 0.95614 1.02262 0.82762 1.45998 1.57879 1.08387 1.24458 1.19001 0.78866 0.84645 0.83560 1.90710 1.54984 1.26270 1.69675 1.23394 1.02122 1.02449 0.93331 1.23139 0.97733 1.00083 0.93469 1.24334 0.94730 0.96754 1.02158 0.85053 1.22985 0.91756 0.93875 0.91733 1.89091 1.34539 1.45022 1.60018 1.22741 0.82528 0.91233 1.02531 0.95094 0.93041 0.94748 0.87723 0.96450 0.97775 0.90053 0.93741 0.93981 0.93057 0.91359 0.92184 0.76960 0.87200 0.87658 0.88173 0.91572 0.91252 0.88027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.91 37.16 0.37 -2.22 16 2 C -0.13 -2.87 5.77 -26.73 -0.15 -3.03 16 3 C 0.17 4.07 4.88 -4.04 -0.02 4.05 16 4 N -0.59 -14.12 2.53 -173.24 -0.44 -14.56 16 5 C -0.26 -6.84 9.67 -15.06 -0.15 -6.98 16 6 H 0.07 1.94 7.96 -52.49 -0.42 1.52 16 7 C 0.00 0.12 4.80 -17.43 -0.08 0.04 16 8 N -0.89 -24.12 8.70 55.49 0.48 -23.64 16 9 Si 0.89 21.47 29.63 -169.99 -5.04 16.43 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 13 C 0.14 2.75 5.80 -4.04 -0.02 2.73 16 14 C 0.09 1.72 6.00 -4.04 -0.02 1.70 16 15 N -0.72 -10.38 5.45 -60.29 -0.33 -10.71 16 16 C 0.55 8.58 7.42 -10.98 -0.08 8.50 16 17 O -0.54 -10.72 16.85 5.56 0.09 -10.62 16 18 C -0.21 -2.37 2.84 -154.09 -0.44 -2.80 16 19 C -0.11 -0.92 9.89 -26.73 -0.26 -1.18 16 20 C -0.16 -1.61 6.90 -89.05 -0.61 -2.23 16 21 H 0.13 1.44 8.14 -51.93 -0.42 1.01 16 22 C 0.07 0.64 7.45 37.93 0.28 0.92 16 23 O -0.37 -4.30 11.62 -35.23 -0.41 -4.71 16 24 C 0.09 0.86 7.09 37.94 0.27 1.13 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 27 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.10 2.66 6.12 -51.93 -0.32 2.34 16 29 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.00 0.09 8.12 -51.93 -0.42 -0.33 16 31 H 0.08 2.13 6.05 -51.93 -0.31 1.82 16 32 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 33 H 0.04 0.74 8.07 -51.93 -0.42 0.32 16 34 H 0.05 0.96 8.04 -51.93 -0.42 0.54 16 35 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.40 4.46 8.27 -40.82 -0.34 4.12 16 38 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.10 1.00 7.88 -51.93 -0.41 0.59 16 LS Contribution 351.04 15.07 5.29 5.29 Total: -1.00 -30.98 351.04 -8.54 -39.52 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -7.26 Total: 2.36 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -0.93 Total: 0.63 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: -0.28 Total: -48.90 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.32 Total: -15.34 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.04 Total: 16.43 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.98 -8.54 -39.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753143399.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.945 kcal (2) G-P(sol) polarization free energy of solvation -30.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds