Wall clock time and date at job start Tue Mar 31 2020 05:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99872 * 2 1 4 4 C 1.53001 * 109.47061 * 119.99880 * 3 2 1 5 5 O 1.42904 * 109.46840 * 0.02562 * 3 2 1 6 6 C 1.52996 * 109.47050 * 240.00277 * 3 2 1 7 7 C 1.50702 * 109.47440 * 60.04200 * 6 3 2 8 8 O 1.21282 * 119.99937 * 354.56062 * 7 6 3 9 9 N 1.34775 * 120.00237 * 174.55287 * 7 6 3 10 10 C 1.46502 * 119.99816 * 0.02562 * 9 7 6 11 11 C 1.46495 * 120.00323 * 179.97438 * 9 7 6 12 12 H 1.08999 * 110.88521 * 359.30191 * 11 9 7 13 13 C 1.55156 * 111.00471 * 123.18494 * 11 9 7 14 14 C 1.54319 * 102.94492 * 153.61992 * 13 11 9 15 15 N 1.47020 * 107.26927 * 337.80159 * 14 13 11 16 16 C 1.36940 * 125.64971 * 178.98399 * 15 14 13 17 17 H 1.08003 * 120.00022 * 174.91734 * 16 15 14 18 18 C 1.38806 * 119.99912 * 354.92648 * 16 15 14 19 19 N 1.31622 * 120.00071 * 5.65617 * 18 16 15 20 20 Si 1.86805 * 120.00274 * 185.65402 * 18 16 15 21 21 H 1.48503 * 109.46941 * 94.99201 * 20 18 16 22 22 H 1.48492 * 109.47271 * 214.99665 * 20 18 16 23 23 H 1.48500 * 109.46796 * 334.99537 * 20 18 16 24 24 C 1.47425 * 108.70213 * 358.94916 * 15 14 13 25 25 H 1.07998 * 120.00347 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.00022 * 179.97438 * 1 2 3 27 27 H 1.07995 * 119.99872 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.46690 * 184.91289 * 4 3 2 29 29 H 1.08995 * 109.46780 * 304.91022 * 4 3 2 30 30 H 1.08997 * 109.46568 * 64.91148 * 4 3 2 31 31 H 0.96699 * 114.00154 * 299.99762 * 5 3 2 32 32 H 1.08999 * 109.46944 * 300.04332 * 6 3 2 33 33 H 1.09006 * 109.47054 * 180.02562 * 6 3 2 34 34 H 1.09009 * 109.46763 * 269.99581 * 10 9 7 35 35 H 1.09002 * 109.47207 * 29.98994 * 10 9 7 36 36 H 1.08996 * 109.47659 * 149.99664 * 10 9 7 37 37 H 1.09011 * 110.71807 * 271.97882 * 13 11 9 38 38 H 1.08995 * 110.71961 * 35.06837 * 13 11 9 39 39 H 1.08997 * 109.88770 * 97.22032 * 14 13 11 40 40 H 1.08999 * 109.88075 * 218.23695 * 14 13 11 41 41 H 0.97006 * 119.99784 * 180.02562 * 19 18 16 42 42 H 1.09002 * 110.36084 * 265.28015 * 24 15 14 43 43 H 1.09003 * 110.36779 * 142.97019 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3862 1.2493 5 8 1.1348 2.3912 0.0006 6 6 2.9430 1.3862 -1.2492 7 6 2.0765 1.3074 -2.4797 8 8 0.8868 1.0985 -2.3712 9 7 2.6237 1.4693 -3.7008 10 6 4.0609 1.7213 -3.8318 11 6 1.7815 1.3922 -4.8969 12 1 0.7448 1.1873 -4.6297 13 6 1.8925 2.6900 -5.7399 14 6 1.5599 2.2051 -7.1667 15 7 1.8198 0.7586 -7.2076 16 6 1.6300 -0.0560 -8.2919 17 1 1.9282 -1.0931 -8.2470 18 6 1.0545 0.4512 -9.4488 19 7 0.7936 1.7377 -9.5445 20 14 0.6505 -0.6920 -10.8698 21 1 -0.7689 -1.1181 -10.7742 22 1 0.8683 0.0195 -12.1549 23 1 1.5310 -1.8863 -10.8099 24 6 2.3194 0.3305 -5.8883 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 3.4208 2.3649 1.2943 29 1 2.3275 1.2411 2.1370 30 1 3.7074 0.6103 1.2063 31 1 0.5432 2.4033 -0.7642 32 1 3.6508 0.5573 -1.2497 33 1 3.4884 2.3300 -1.2490 34 1 4.2451 2.7955 -3.8074 35 1 4.5903 1.2431 -3.0077 36 1 4.4166 1.3131 -4.7778 37 1 1.1660 3.4306 -5.4052 38 1 2.9033 3.0950 -5.6930 39 1 0.5108 2.3996 -7.3892 40 1 2.1935 2.7185 -7.8898 41 1 0.3910 2.0921 -10.3529 42 1 3.4094 0.3216 -5.8802 43 1 1.9294 -0.6558 -5.6367 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753434996.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:30 Heat of formation + Delta-G solvation = -31.471400 kcal Electronic energy + Delta-G solvation = -23195.895388 eV Core-core repulsion = 19856.863476 eV Total energy + Delta-G solvation = -3339.031912 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.39364 -38.36481 -36.91837 -34.84125 -33.00618 -32.25287 -31.20616 -29.39213 -28.49740 -27.31945 -26.49310 -24.39712 -22.61569 -20.70977 -20.14926 -19.60351 -18.80829 -17.34994 -17.01471 -16.67266 -16.17397 -15.67149 -15.05599 -14.62158 -14.36274 -14.06275 -13.60405 -13.32699 -12.97777 -12.78111 -12.60288 -12.46325 -12.39180 -12.19074 -12.06257 -11.99761 -11.75759 -11.70033 -11.04142 -10.96809 -10.88395 -10.77688 -10.35925 -10.13853 -10.09348 -9.85770 -9.81065 -9.72071 -9.04305 -8.62840 -8.38471 -6.86715 -5.75035 -3.08704 2.40811 2.69379 3.09917 3.39347 3.44542 3.46270 4.17449 4.45409 4.49467 4.63107 4.71802 5.04975 5.21351 5.25127 5.30700 5.32192 5.38957 5.41649 5.51361 5.58749 5.63799 5.65346 5.70206 5.74382 5.84582 5.93901 6.04100 6.21123 6.25307 6.45866 6.53402 6.65526 6.66350 6.85908 6.92825 7.49728 7.53008 7.59690 7.68916 7.79440 8.21154 8.28417 9.18067 9.78202 10.43395 11.36666 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.032887 B = 0.003693 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.197099 B = 7580.820237 C = 7836.784288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.191 4.191 3 C 0.177 3.823 4 C -0.133 4.133 5 O -0.563 6.563 6 C -0.165 4.165 7 C 0.513 3.487 8 O -0.541 6.541 9 N -0.599 5.599 10 C 0.072 3.928 11 C 0.123 3.877 12 H 0.107 0.893 13 C -0.151 4.151 14 C 0.179 3.821 15 N -0.603 5.603 16 C -0.231 4.231 17 H 0.078 0.922 18 C -0.006 4.006 19 N -0.919 5.919 20 Si 0.912 3.088 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.131 3.869 25 H 0.101 0.899 26 H 0.092 0.908 27 H 0.107 0.893 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.387 0.613 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.051 0.949 40 H 0.042 0.958 41 H 0.253 0.747 42 H 0.021 0.979 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.914 0.503 18.677 19.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.210 4.210 3 C 0.136 3.864 4 C -0.191 4.191 5 O -0.373 6.373 6 C -0.205 4.205 7 C 0.301 3.699 8 O -0.419 6.419 9 N -0.331 5.331 10 C -0.071 4.071 11 C 0.019 3.981 12 H 0.125 0.875 13 C -0.190 4.190 14 C 0.054 3.946 15 N -0.329 5.329 16 C -0.359 4.359 17 H 0.096 0.904 18 C -0.202 4.202 19 N -0.567 5.567 20 Si 0.742 3.258 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.206 1.206 24 C 0.003 3.997 25 H 0.119 0.881 26 H 0.111 0.889 27 H 0.125 0.875 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.239 0.761 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.039 0.961 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 6.513 0.559 19.031 20.123 hybrid contribution -0.305 -0.741 -1.549 1.744 sum 6.208 -0.182 17.483 18.553 Atomic orbital electron populations 1.23617 0.95982 1.01663 0.97222 1.23197 0.96827 0.97668 1.03276 1.19804 0.88136 0.85353 0.93118 1.21698 0.98697 1.02476 0.96199 1.86408 1.50983 1.48800 1.51154 1.22466 0.99749 1.04891 0.93435 1.20573 0.88686 0.76205 0.84443 1.90649 1.15906 1.49249 1.86142 1.47860 1.08959 1.70099 1.06171 1.21836 0.80613 1.01134 1.03525 1.22443 0.95563 0.97112 0.82991 0.87515 1.23212 1.00791 0.96390 0.98656 1.21148 1.00433 0.83818 0.89236 1.44379 1.77015 1.04613 1.06937 1.19053 1.34247 0.92360 0.90264 0.90382 1.24832 1.00863 0.96237 0.98275 1.69970 1.48318 1.10668 1.27706 0.86100 0.78357 0.79623 0.81694 1.21533 1.21714 1.20613 1.21761 0.96164 0.95506 0.86241 0.88111 0.88937 0.87492 0.91671 0.91592 0.91115 0.76076 0.88051 0.88271 0.92549 0.91402 0.89976 0.91982 0.92214 0.93060 0.93965 0.93679 0.96132 0.94120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 12.60 29.01 0.37 -1.47 16 2 C -0.19 -2.23 7.47 -36.03 -0.27 -2.50 16 3 C 0.18 1.94 1.08 -91.77 -0.10 1.84 16 4 C -0.13 -1.13 8.82 37.16 0.33 -0.80 16 5 O -0.56 -7.38 11.92 -51.76 -0.62 -8.00 16 6 C -0.17 -1.67 3.44 -27.88 -0.10 -1.77 16 7 C 0.51 7.18 7.16 -10.99 -0.08 7.10 16 8 O -0.54 -9.06 11.33 -10.97 -0.12 -9.19 16 9 N -0.60 -8.60 2.91 -171.48 -0.50 -9.10 16 10 C 0.07 0.78 8.97 59.85 0.54 1.32 16 11 C 0.12 2.23 3.45 -65.79 -0.23 2.01 16 12 H 0.11 2.18 7.01 -51.93 -0.36 1.82 16 13 C -0.15 -2.83 6.53 -24.90 -0.16 -2.99 16 14 C 0.18 4.32 5.38 -3.07 -0.02 4.30 16 15 N -0.60 -15.40 3.39 -170.08 -0.58 -15.97 16 16 C -0.23 -6.46 10.27 -15.06 -0.15 -6.61 16 17 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 18 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 19 N -0.92 -26.95 10.35 55.49 0.57 -26.37 16 20 Si 0.91 22.09 29.56 -169.99 -5.02 17.07 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 C 0.13 2.71 6.79 -2.53 -0.02 2.69 16 25 H 0.10 1.30 6.41 -52.49 -0.34 0.96 16 26 H 0.09 1.05 8.06 -52.49 -0.42 0.63 16 27 H 0.11 1.11 8.06 -52.49 -0.42 0.69 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.39 5.30 5.79 45.56 0.26 5.56 16 32 H 0.10 0.82 7.68 -51.93 -0.40 0.42 16 33 H 0.10 0.87 7.95 -51.93 -0.41 0.46 16 34 H 0.06 0.55 8.08 -51.92 -0.42 0.13 16 35 H 0.07 0.54 6.59 -51.93 -0.34 0.20 16 36 H 0.08 0.98 6.10 -51.93 -0.32 0.67 16 37 H 0.06 1.11 8.14 -51.92 -0.42 0.68 16 38 H 0.06 1.01 7.17 -51.93 -0.37 0.64 16 39 H 0.05 1.38 7.26 -51.93 -0.38 1.01 16 40 H 0.04 1.11 7.63 -51.93 -0.40 0.72 16 41 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.02 0.41 6.09 -51.93 -0.32 0.10 16 43 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 334.98 15.07 5.05 5.05 Total: -1.00 -31.68 334.98 -7.50 -39.18 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -6.29 Total: 4.48 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: 0.01 Total: 2.86 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: -0.50 Total: -51.44 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.74 Total: -17.18 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.68 -7.50 -39.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753434996.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.707 kcal (2) G-P(sol) polarization free energy of solvation -31.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds