Wall clock time and date at job start Tue Mar 31 2020 05:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00204 * 2 1 4 4 C 1.52993 * 109.47475 * 240.00406 * 3 2 1 5 5 O 1.42907 * 109.46686 * 0.02562 * 3 2 1 6 6 C 1.53001 * 109.47047 * 120.00002 * 3 2 1 7 7 C 1.50698 * 109.46789 * 180.02562 * 6 3 2 8 8 O 1.21283 * 120.00443 * 0.02562 * 7 6 3 9 9 N 1.34776 * 119.99636 * 180.02562 * 7 6 3 10 10 C 1.46497 * 120.00324 * 359.97438 * 9 7 6 11 11 C 1.46505 * 119.99909 * 179.97438 * 9 7 6 12 12 H 1.08998 * 110.64229 * 0.70086 * 11 9 7 13 13 C 1.55152 * 110.71919 * 237.55730 * 11 9 7 14 14 C 1.55391 * 101.36477 * 277.04202 * 13 11 9 15 15 N 1.47423 * 104.87667 * 323.01532 * 14 13 11 16 16 C 1.36932 * 125.65336 * 204.16783 * 15 14 13 17 17 H 1.08001 * 120.00705 * 179.97438 * 16 15 14 18 18 C 1.38815 * 119.99727 * 359.96063 * 16 15 14 19 19 N 1.31619 * 120.00207 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99961 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47163 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47249 * 120.00143 * 20 18 16 23 23 H 1.48501 * 109.46862 * 239.99945 * 20 18 16 24 24 C 1.47024 * 108.69988 * 24.13613 * 15 14 13 25 25 H 1.08002 * 120.00352 * 0.02562 * 1 2 3 26 26 H 1.08005 * 119.99880 * 179.72197 * 1 2 3 27 27 H 1.08002 * 120.00350 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.47598 * 59.99897 * 4 3 2 29 29 H 1.08998 * 109.47403 * 180.02562 * 4 3 2 30 30 H 1.09007 * 109.47003 * 299.99825 * 4 3 2 31 31 H 0.96690 * 114.00255 * 59.99783 * 5 3 2 32 32 H 1.08997 * 109.46979 * 300.00157 * 6 3 2 33 33 H 1.08998 * 109.47086 * 60.00513 * 6 3 2 34 34 H 1.09004 * 109.47100 * 90.00343 * 10 9 7 35 35 H 1.09002 * 109.47561 * 210.00409 * 10 9 7 36 36 H 1.09000 * 109.47101 * 330.00367 * 10 9 7 37 37 H 1.08994 * 111.00494 * 35.20915 * 13 11 9 38 38 H 1.09003 * 111.00607 * 159.06864 * 13 11 9 39 39 H 1.09003 * 110.34191 * 204.16382 * 14 13 11 40 40 H 1.08997 * 110.35144 * 81.87580 * 14 13 11 41 41 H 0.97005 * 120.00067 * 179.97438 * 19 18 16 42 42 H 1.09008 * 109.88265 * 239.52164 * 24 15 14 43 43 H 1.08994 * 109.88141 * 118.35878 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9430 1.3862 -1.2492 5 8 1.1348 2.3913 0.0006 6 6 2.9431 1.3861 1.2493 7 6 3.6962 2.6914 1.2495 8 8 3.5439 3.4796 0.3404 9 7 4.5388 2.9830 2.2601 10 6 4.7223 2.0313 3.3586 11 6 5.2714 4.2518 2.2602 12 1 5.0122 4.8451 1.3833 13 6 6.8014 4.0022 2.3215 14 6 7.0179 3.8006 3.8470 15 7 6.0912 4.7502 4.4895 16 6 6.2301 5.2737 5.7472 17 1 5.4935 5.9655 6.1286 18 6 7.3174 4.9152 6.5320 19 7 8.2147 4.0717 6.0676 20 14 7.5065 5.6289 8.2480 21 1 6.3724 6.5449 8.5309 22 1 7.5143 4.5276 9.2441 23 1 8.7835 6.3821 8.3328 24 6 4.9936 5.0425 3.5560 25 1 -0.5401 0.9353 -0.0004 26 1 -0.5400 -0.9354 -0.0045 27 1 1.8500 -0.9353 -0.0004 28 1 2.3164 1.3286 -2.1392 29 1 3.4884 2.3300 -1.2490 30 1 3.6514 0.5577 -1.2493 31 1 0.5438 2.4030 0.7658 32 1 2.3165 1.3283 2.1392 33 1 3.6514 0.5576 1.2492 34 1 5.5385 1.3504 3.1169 35 1 4.9607 2.5738 4.2735 36 1 3.8044 1.4615 3.5028 37 1 7.0739 3.1066 1.7632 38 1 7.3536 4.8695 1.9595 39 1 8.0478 4.0335 4.1176 40 1 6.7718 2.7779 4.1329 41 1 8.9747 3.8214 6.6160 42 1 4.9655 6.1105 3.3397 43 1 4.0449 4.7246 3.9882 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753434997.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:33 Heat of formation + Delta-G solvation = -23.080053 kcal Electronic energy + Delta-G solvation = -23340.894745 eV Core-core repulsion = 20002.226709 eV Total energy + Delta-G solvation = -3338.668036 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.23561 -38.48444 -37.02279 -34.37275 -33.11626 -32.22411 -31.22596 -29.35174 -28.22551 -27.60780 -26.01505 -24.30811 -22.96163 -20.58701 -20.14073 -19.75851 -18.52377 -17.26759 -16.95459 -16.75244 -15.79930 -15.44923 -15.34356 -14.69087 -14.57011 -13.79609 -13.64901 -13.47740 -12.91314 -12.64072 -12.36775 -12.22603 -12.16607 -12.06388 -11.79851 -11.70525 -11.57551 -11.52536 -11.15545 -11.05087 -10.92382 -10.79057 -10.33729 -10.15262 -10.11204 -9.87424 -9.64939 -9.55291 -9.19884 -8.69312 -8.18931 -6.87951 -5.69823 -3.11772 1.97972 2.89690 3.30474 3.36774 3.43000 3.44943 4.16755 4.45566 4.50282 4.65723 4.86974 4.98177 5.04898 5.37521 5.41716 5.45475 5.49299 5.50896 5.59209 5.61602 5.72781 5.81641 5.86063 5.93893 5.99100 6.20900 6.27241 6.31582 6.36923 6.39334 6.51717 6.56664 6.61614 6.72457 7.07018 7.44588 7.59479 7.62537 7.77608 7.82070 8.31480 8.50807 9.17707 9.78157 10.42741 11.33631 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034907 B = 0.003734 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.945915 B = 7496.218557 C = 7684.180784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.184 4.184 3 C 0.177 3.823 4 C -0.146 4.146 5 O -0.538 6.538 6 C -0.163 4.163 7 C 0.512 3.488 8 O -0.529 6.529 9 N -0.596 5.596 10 C 0.071 3.929 11 C 0.126 3.874 12 H 0.099 0.901 13 C -0.155 4.155 14 C 0.146 3.854 15 N -0.603 5.603 16 C -0.222 4.222 17 H 0.078 0.922 18 C -0.010 4.010 19 N -0.921 5.921 20 Si 0.914 3.086 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.127 3.873 25 H 0.105 0.895 26 H 0.098 0.902 27 H 0.115 0.885 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.061 0.939 31 H 0.368 0.632 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.053 0.947 35 H 0.100 0.900 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.105 0.895 40 H 0.021 0.979 41 H 0.251 0.749 42 H 0.032 0.968 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.651 -9.494 -9.911 17.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.203 4.203 3 C 0.135 3.865 4 C -0.203 4.203 5 O -0.343 6.343 6 C -0.204 4.204 7 C 0.300 3.700 8 O -0.406 6.406 9 N -0.329 5.329 10 C -0.072 4.072 11 C 0.023 3.977 12 H 0.117 0.883 13 C -0.195 4.195 14 C 0.022 3.978 15 N -0.330 5.330 16 C -0.350 4.350 17 H 0.095 0.905 18 C -0.206 4.206 19 N -0.570 5.570 20 Si 0.744 3.256 21 H -0.206 1.206 22 H -0.218 1.218 23 H -0.218 1.218 24 C 0.001 3.999 25 H 0.123 0.877 26 H 0.117 0.883 27 H 0.133 0.867 28 H 0.076 0.924 29 H 0.114 0.886 30 H 0.080 0.920 31 H 0.214 0.786 32 H 0.111 0.889 33 H 0.118 0.882 34 H 0.072 0.928 35 H 0.119 0.881 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.123 0.877 40 H 0.038 0.962 41 H 0.062 0.938 42 H 0.050 0.950 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -10.282 -8.931 -10.759 17.356 hybrid contribution -0.157 -0.116 1.664 1.675 sum -10.439 -9.048 -9.095 16.539 Atomic orbital electron populations 1.23854 0.96046 1.02312 0.99856 1.23646 0.96758 0.98899 1.00977 1.19867 0.87996 0.83879 0.94747 1.21929 0.98810 1.04448 0.95139 1.86720 1.50068 1.48970 1.48494 1.22404 1.00363 0.97413 1.00177 1.20346 0.79562 0.88224 0.81894 1.90637 1.64623 1.50085 1.35296 1.47846 1.42971 1.19537 1.22551 1.22049 1.00300 0.93005 0.91875 1.22110 0.92382 0.84092 0.99162 0.88318 1.23430 0.93935 1.00879 1.01248 1.22181 0.98556 0.92027 0.85084 1.44555 1.23325 1.51698 1.13396 1.19125 1.06314 1.20768 0.88823 0.90464 1.24774 0.97381 0.99617 0.98792 1.69812 1.13910 1.37242 1.36054 0.86011 0.77545 0.78160 0.83850 1.20556 1.21780 1.21757 1.21631 0.92362 0.96567 0.89381 0.87725 0.88327 0.86697 0.92402 0.88587 0.91992 0.78568 0.88865 0.88232 0.92825 0.88124 0.92418 0.92135 0.91154 0.87744 0.96161 0.93795 0.95011 0.95615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.50 13.93 29.02 0.40 -1.10 16 2 C -0.18 -1.66 8.77 -36.02 -0.32 -1.97 16 3 C 0.18 2.00 0.94 -91.77 -0.09 1.91 16 4 C -0.15 -1.78 8.50 37.15 0.32 -1.46 16 5 O -0.54 -6.89 10.84 -53.51 -0.58 -7.47 16 6 C -0.16 -1.84 3.48 -27.88 -0.10 -1.93 16 7 C 0.51 7.91 7.23 -10.99 -0.08 7.83 16 8 O -0.53 -9.76 12.33 -12.72 -0.16 -9.91 16 9 N -0.60 -9.72 2.82 -171.83 -0.48 -10.20 16 10 C 0.07 1.06 8.29 59.85 0.50 1.56 16 11 C 0.13 2.34 3.57 -66.09 -0.24 2.10 16 12 H 0.10 1.86 6.99 -51.93 -0.36 1.50 16 13 C -0.16 -2.97 6.60 -24.32 -0.16 -3.13 16 14 C 0.15 3.37 5.03 -2.27 -0.01 3.35 16 15 N -0.60 -14.83 2.93 -169.77 -0.50 -15.33 16 16 C -0.22 -6.00 10.27 -15.06 -0.15 -6.16 16 17 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 18 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 19 N -0.92 -25.92 10.09 55.49 0.56 -25.36 16 20 Si 0.91 21.59 29.55 -169.99 -5.02 16.56 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 C 0.13 2.68 6.17 -3.06 -0.02 2.66 16 25 H 0.10 0.85 6.41 -52.49 -0.34 0.52 16 26 H 0.10 0.66 8.06 -52.48 -0.42 0.24 16 27 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.10 1.45 5.51 -51.93 -0.29 1.16 16 30 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 31 H 0.37 3.49 8.05 45.56 0.37 3.86 16 32 H 0.09 0.91 7.40 -51.93 -0.38 0.53 16 33 H 0.10 0.96 8.11 -51.93 -0.42 0.54 16 34 H 0.05 0.76 7.90 -51.93 -0.41 0.35 16 35 H 0.10 1.88 5.30 -51.93 -0.28 1.60 16 36 H 0.06 0.69 6.44 -51.93 -0.33 0.35 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.10 2.77 5.87 -51.93 -0.31 2.47 16 40 H 0.02 0.48 5.62 -51.93 -0.29 0.19 16 41 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 42 H 0.03 0.68 8.14 -51.92 -0.42 0.25 16 43 H 0.03 0.55 7.98 -51.93 -0.41 0.13 16 LS Contribution 332.74 15.07 5.01 5.01 Total: -1.00 -31.05 332.74 -7.17 -38.22 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -5.96 Total: 5.22 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -0.04 Total: 3.28 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: -0.42 Total: -50.90 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.74 Total: -17.39 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.05 -7.17 -38.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753434997.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.136 kcal (2) G-P(sol) polarization free energy of solvation -31.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds