Wall clock time and date at job start Tue Mar 31 2020 05:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 119.99879 * 2 1 4 4 C 1.52998 * 109.47166 * 239.99932 * 3 2 1 5 5 O 1.42894 * 109.47221 * 359.97438 * 3 2 1 6 6 C 1.52998 * 109.47369 * 120.00103 * 3 2 1 7 7 C 1.50693 * 109.47385 * 180.02562 * 6 3 2 8 8 O 1.21280 * 120.00157 * 359.97438 * 7 6 3 9 9 N 1.34780 * 120.00153 * 179.97438 * 7 6 3 10 10 C 1.46506 * 119.99929 * 0.02562 * 9 7 6 11 11 C 1.46499 * 120.00216 * 179.97438 * 9 7 6 12 12 H 1.09003 * 110.88301 * 356.12135 * 11 9 7 13 13 C 1.55155 * 111.00625 * 120.00408 * 11 9 7 14 14 C 1.54317 * 102.94335 * 82.60829 * 13 11 9 15 15 N 1.47023 * 107.27282 * 22.19866 * 14 13 11 16 16 C 1.36931 * 125.64883 * 181.02091 * 15 14 13 17 17 H 1.08009 * 119.99692 * 176.08203 * 16 15 14 18 18 C 1.38816 * 120.00326 * 356.08766 * 16 15 14 19 19 N 1.31617 * 119.99675 * 211.87206 * 18 16 15 20 20 Si 1.86794 * 119.99896 * 31.59230 * 18 16 15 21 21 H 1.48509 * 109.47104 * 275.60954 * 20 18 16 22 22 H 1.48500 * 109.47195 * 35.60616 * 20 18 16 23 23 H 1.48496 * 109.47386 * 155.61205 * 20 18 16 24 24 C 1.47426 * 108.69885 * 1.28158 * 15 14 13 25 25 H 1.07995 * 120.00042 * 180.02562 * 1 2 3 26 26 H 1.08001 * 120.00251 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.00251 * 180.02562 * 2 1 3 28 28 H 1.09006 * 109.46718 * 299.99961 * 4 3 2 29 29 H 1.09000 * 109.47172 * 59.99595 * 4 3 2 30 30 H 1.08996 * 109.47395 * 179.97438 * 4 3 2 31 31 H 0.96699 * 114.00421 * 59.99910 * 5 3 2 32 32 H 1.08998 * 109.47547 * 59.99232 * 6 3 2 33 33 H 1.09011 * 109.46758 * 300.00056 * 6 3 2 34 34 H 1.08998 * 109.46371 * 269.99503 * 10 9 7 35 35 H 1.08992 * 109.46974 * 29.99241 * 10 9 7 36 36 H 1.08990 * 109.47113 * 149.99975 * 10 9 7 37 37 H 1.09003 * 110.71585 * 324.24578 * 13 11 9 38 38 H 1.09003 * 110.71865 * 200.97793 * 13 11 9 39 39 H 1.08995 * 109.88452 * 262.77332 * 14 13 11 40 40 H 1.09006 * 109.88146 * 141.61027 * 14 13 11 41 41 H 0.96995 * 120.00473 * 354.69490 * 19 18 16 42 42 H 1.08996 * 110.36566 * 94.48972 * 24 15 14 43 43 H 1.09001 * 110.36618 * 216.80702 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3862 -1.2492 5 8 1.1349 2.3912 -0.0006 6 6 2.9431 1.3863 1.2492 7 6 3.6961 2.6916 1.2495 8 8 3.5445 3.4793 0.3399 9 7 4.5380 2.9837 2.2606 10 6 4.7215 2.0319 3.3592 11 6 5.2704 4.2524 2.2607 12 1 5.0768 4.8129 1.3461 13 6 4.9208 5.0964 3.5148 14 6 5.8409 4.4998 4.6005 15 7 6.9582 3.8385 3.9107 16 6 7.9861 3.1677 4.5177 17 1 8.7281 2.6604 3.9188 18 6 8.0746 3.1397 5.9028 19 7 9.2535 3.0911 6.4860 20 14 6.5208 3.1789 6.9388 21 1 6.0850 4.5865 7.1244 22 1 5.4484 2.4152 6.2519 23 1 6.7937 2.5666 8.2638 24 6 6.7919 4.0226 2.4574 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 3.6514 0.5577 -1.2491 29 1 2.3165 1.3284 -2.1392 30 1 3.4877 2.3303 -1.2495 31 1 0.5432 2.4034 0.7642 32 1 3.6514 0.5578 1.2493 33 1 2.3164 1.3285 2.1392 34 1 3.9959 2.2403 4.1454 35 1 4.5750 1.0173 2.9891 36 1 5.7301 2.1302 3.7604 37 1 3.8725 4.9693 3.7851 38 1 5.1524 6.1485 3.3484 39 1 5.2890 3.7716 5.1949 40 1 6.2202 5.2946 5.2428 41 1 10.0564 2.9972 5.9499 42 1 7.3562 4.8912 2.1181 43 1 7.1124 3.1285 1.9226 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753434998.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:37 Heat of formation + Delta-G solvation = -17.606264 kcal Electronic energy + Delta-G solvation = -23641.884465 eV Core-core repulsion = 20303.453790 eV Total energy + Delta-G solvation = -3338.430675 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.31891 -38.67083 -37.24894 -34.38651 -33.15065 -32.46711 -31.33917 -29.77677 -28.63140 -27.78037 -26.09067 -23.86521 -22.95709 -21.02283 -20.42445 -19.79480 -18.65032 -17.50241 -17.27642 -16.81537 -15.86219 -15.79586 -15.34585 -14.95515 -14.60570 -14.18386 -13.61927 -13.37157 -13.33627 -12.92821 -12.67766 -12.40667 -12.28414 -12.18473 -11.93321 -11.76562 -11.58967 -11.58092 -11.23592 -11.18073 -10.98607 -10.92476 -10.79217 -10.25955 -10.12901 -9.76066 -9.66886 -9.29843 -9.25150 -8.51915 -8.24488 -7.08124 -6.44976 -3.19449 1.95737 2.83021 3.23349 3.37242 3.39984 3.60730 4.13473 4.46589 4.53499 4.62791 4.83966 4.88110 4.99471 5.01526 5.16425 5.29242 5.34767 5.44262 5.53130 5.55685 5.58091 5.60928 5.79844 5.85347 5.88850 5.95348 6.06812 6.20896 6.24718 6.26747 6.37256 6.43770 6.49734 6.51182 6.58169 6.77359 6.95686 7.58263 7.63399 7.72818 8.27298 8.43985 8.98153 9.55032 10.21602 11.06268 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028042 B = 0.004512 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.261231 B = 6204.413110 C = 6485.215637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.184 4.184 3 C 0.177 3.823 4 C -0.147 4.147 5 O -0.538 6.538 6 C -0.163 4.163 7 C 0.512 3.488 8 O -0.530 6.530 9 N -0.594 5.594 10 C 0.056 3.944 11 C 0.122 3.878 12 H 0.105 0.895 13 C -0.137 4.137 14 C 0.104 3.896 15 N -0.607 5.607 16 C -0.344 4.344 17 H 0.078 0.922 18 C -0.015 4.015 19 N -0.909 5.909 20 Si 1.062 2.938 21 H -0.293 1.293 22 H -0.291 1.291 23 H -0.300 1.300 24 C 0.130 3.870 25 H 0.099 0.901 26 H 0.104 0.896 27 H 0.115 0.885 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.095 0.905 31 H 0.367 0.633 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.047 0.953 35 H 0.058 0.942 36 H 0.119 0.881 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.036 0.964 40 H 0.041 0.959 41 H 0.265 0.735 42 H 0.038 0.962 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.819 -4.979 -10.001 19.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.203 4.203 3 C 0.136 3.864 4 C -0.203 4.203 5 O -0.342 6.342 6 C -0.204 4.204 7 C 0.300 3.700 8 O -0.407 6.407 9 N -0.326 5.326 10 C -0.087 4.087 11 C 0.017 3.983 12 H 0.123 0.877 13 C -0.176 4.176 14 C -0.021 4.021 15 N -0.335 5.335 16 C -0.470 4.470 17 H 0.096 0.904 18 C -0.217 4.217 19 N -0.549 5.549 20 Si 0.896 3.104 21 H -0.221 1.221 22 H -0.219 1.219 23 H -0.228 1.228 24 C 0.003 3.997 25 H 0.117 0.883 26 H 0.122 0.878 27 H 0.133 0.867 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.114 0.886 31 H 0.214 0.786 32 H 0.119 0.881 33 H 0.111 0.889 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.137 0.863 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.053 0.947 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.055 0.945 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -16.022 -4.422 -9.433 19.111 hybrid contribution 0.244 -0.517 -0.753 0.946 sum -15.778 -4.939 -10.186 19.419 Atomic orbital electron populations 1.23848 0.96027 1.02305 0.99885 1.23649 0.96768 0.98914 1.00942 1.19864 0.87965 0.83884 0.94723 1.21934 0.98820 1.04467 0.95127 1.86719 1.50025 1.49004 1.48494 1.22399 1.00313 0.97413 1.00243 1.20376 0.79426 0.88301 0.81853 1.90633 1.64576 1.50216 1.35297 1.47748 1.42663 1.19357 1.22866 1.22305 1.06499 0.90899 0.88979 1.22304 0.92793 0.84205 0.98978 0.87674 1.22913 0.99486 0.99421 0.95792 1.21821 0.89393 0.95934 0.94955 1.44828 1.26012 1.62694 1.00011 1.19892 1.02522 1.32963 0.91632 0.90400 1.25621 1.02722 0.99377 0.93941 1.70904 0.97531 1.47851 1.38567 0.83917 0.75061 0.76305 0.75145 1.22074 1.21900 1.22823 1.21930 0.91774 0.99187 0.86807 0.88303 0.87750 0.86658 0.91943 0.92380 0.88608 0.78631 0.88099 0.88909 0.93406 0.92331 0.86307 0.91330 0.90390 0.94664 0.94090 0.92474 0.94462 0.93480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.49 13.93 29.02 0.40 -1.09 16 2 C -0.18 -1.67 8.77 -36.02 -0.32 -1.98 16 3 C 0.18 1.99 0.94 -91.77 -0.09 1.90 16 4 C -0.15 -1.78 8.50 37.16 0.32 -1.47 16 5 O -0.54 -6.69 10.84 -53.50 -0.58 -7.27 16 6 C -0.16 -1.86 3.49 -27.89 -0.10 -1.95 16 7 C 0.51 7.78 7.23 -10.99 -0.08 7.70 16 8 O -0.53 -9.44 12.34 -12.71 -0.16 -9.60 16 9 N -0.59 -9.56 2.91 -171.35 -0.50 -10.06 16 10 C 0.06 0.89 8.51 59.85 0.51 1.40 16 11 C 0.12 2.09 3.66 -65.67 -0.24 1.85 16 12 H 0.11 1.79 7.02 -51.93 -0.36 1.43 16 13 C -0.14 -2.33 6.48 -24.90 -0.16 -2.49 16 14 C 0.10 2.17 3.80 -3.07 -0.01 2.16 16 15 N -0.61 -14.05 1.85 -169.94 -0.31 -14.36 16 16 C -0.34 -9.32 9.94 -15.06 -0.15 -9.47 16 17 H 0.08 2.25 8.06 -52.48 -0.42 1.82 16 18 C -0.01 -0.42 5.44 -17.43 -0.09 -0.51 16 19 N -0.91 -27.56 13.70 55.49 0.76 -26.80 16 20 Si 1.06 25.41 24.66 -169.99 -4.19 21.22 16 21 H -0.29 -6.76 6.40 56.52 0.36 -6.40 16 22 H -0.29 -6.30 6.41 56.52 0.36 -5.94 16 23 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 24 C 0.13 2.56 6.43 -2.41 -0.02 2.55 16 25 H 0.10 0.66 8.06 -52.49 -0.42 0.24 16 26 H 0.10 0.83 6.41 -52.49 -0.34 0.49 16 27 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.10 1.43 5.51 -51.93 -0.29 1.15 16 31 H 0.37 3.33 8.05 45.56 0.37 3.70 16 32 H 0.10 1.02 7.40 -51.93 -0.38 0.63 16 33 H 0.09 0.92 8.11 -51.92 -0.42 0.49 16 34 H 0.05 0.73 7.90 -51.93 -0.41 0.32 16 35 H 0.06 0.76 6.44 -51.93 -0.33 0.43 16 36 H 0.12 2.35 4.74 -51.93 -0.25 2.10 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.04 0.76 3.26 -51.93 -0.17 0.59 16 40 H 0.04 0.93 6.88 -51.93 -0.36 0.57 16 41 H 0.26 7.96 8.73 -40.82 -0.36 7.60 16 42 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 326.82 15.07 4.93 4.93 Total: -1.00 -31.78 326.82 -6.06 -37.84 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -5.98 Total: 5.49 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -0.02 Total: -1.40 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: -0.05 Total: -51.21 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.74 Total: -16.87 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -4.19 Total: 21.22 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.78 -6.06 -37.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753434998.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.239 kcal (2) G-P(sol) polarization free energy of solvation -31.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds