Wall clock time and date at job start Tue Mar 31 2020 05:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 120.00396 * 2 1 4 4 C 1.52992 * 109.47360 * 119.99836 * 3 2 1 5 5 O 1.42902 * 109.46859 * 359.97438 * 3 2 1 6 6 C 1.53008 * 109.47084 * 239.99932 * 3 2 1 7 7 C 1.50703 * 109.47173 * 57.36078 * 6 3 2 8 8 O 1.21282 * 120.00017 * 6.04053 * 7 6 3 9 9 N 1.34772 * 119.99901 * 186.04095 * 7 6 3 10 10 C 1.46491 * 120.00263 * 0.02562 * 9 7 6 11 11 C 1.46506 * 119.99686 * 180.02562 * 9 7 6 12 12 H 1.08998 * 110.64049 * 50.40705 * 11 9 7 13 13 C 1.55161 * 110.87224 * 287.15910 * 11 9 7 14 14 C 1.54907 * 101.57816 * 277.06981 * 13 11 9 15 15 N 1.47429 * 104.83462 * 322.99030 * 14 13 11 16 16 C 1.36939 * 125.64733 * 204.17155 * 15 14 13 17 17 H 1.08000 * 119.99680 * 179.97438 * 16 15 14 18 18 C 1.38814 * 120.00165 * 359.94995 * 16 15 14 19 19 N 1.31624 * 119.99722 * 0.02562 * 18 16 15 20 20 Si 1.86791 * 120.00149 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47329 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47376 * 120.00198 * 20 18 16 23 23 H 1.48500 * 109.47302 * 240.00444 * 20 18 16 24 24 C 1.47022 * 108.70228 * 24.12812 * 15 14 13 25 25 H 1.07993 * 120.00494 * 180.02562 * 1 2 3 26 26 H 1.08003 * 119.99470 * 0.02562 * 1 2 3 27 27 H 1.08007 * 119.99954 * 179.97438 * 2 1 3 28 28 H 1.09009 * 109.47325 * 184.76901 * 4 3 2 29 29 H 1.08996 * 109.47220 * 304.76716 * 4 3 2 30 30 H 1.08994 * 109.47577 * 64.77323 * 4 3 2 31 31 H 0.96699 * 114.00377 * 300.00495 * 5 3 2 32 32 H 1.09000 * 109.46464 * 297.36654 * 6 3 2 33 33 H 1.08996 * 109.47453 * 177.36329 * 6 3 2 34 34 H 1.09006 * 109.46865 * 269.71353 * 10 9 7 35 35 H 1.09004 * 109.47433 * 29.70887 * 10 9 7 36 36 H 1.08996 * 109.47512 * 149.71403 * 10 9 7 37 37 H 1.08995 * 111.00053 * 35.14453 * 13 11 9 38 38 H 1.09003 * 110.99994 * 158.99547 * 13 11 9 39 39 H 1.09005 * 110.36190 * 204.15457 * 14 13 11 40 40 H 1.08996 * 110.37035 * 81.83276 * 14 13 11 41 41 H 0.96998 * 119.99793 * 179.97438 * 19 18 16 42 42 H 1.08998 * 109.88442 * 239.52107 * 24 15 14 43 43 H 1.09003 * 109.87660 * 118.36018 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3861 1.2492 5 8 1.1350 2.3912 -0.0006 6 6 2.9432 1.3860 -1.2493 7 6 2.0840 1.2412 -2.4789 8 8 0.8766 1.1984 -2.3734 9 7 2.6575 1.1593 -3.6958 10 6 4.1159 1.2104 -3.8232 11 6 1.8222 1.0191 -4.8912 12 1 1.0363 1.7743 -4.9016 13 6 1.2149 -0.4062 -4.9772 14 6 2.3788 -1.2018 -5.6191 15 7 2.9839 -0.2699 -6.5881 16 6 3.7076 -0.6274 -7.6943 17 1 4.1105 0.1344 -8.3453 18 6 3.9238 -1.9688 -7.9785 19 7 3.4327 -2.8971 -7.1851 20 14 4.9116 -2.4564 -9.4871 21 1 5.3496 -1.2344 -10.2083 22 1 6.1033 -3.2368 -9.0675 23 1 4.0677 -3.2857 -10.3845 24 6 2.6807 1.1069 -6.1706 25 1 -0.5400 -0.9352 0.0004 26 1 -0.5399 0.9354 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 3.4230 2.3639 1.2929 29 1 2.3272 1.2437 2.1371 30 1 3.7059 0.6087 1.2076 31 1 0.5439 2.4030 -0.7658 32 1 3.6820 0.5849 -1.2259 33 1 3.4525 2.3494 -1.2733 34 1 4.4335 2.2455 -3.9494 35 1 4.5740 0.7969 -2.9247 36 1 4.4256 0.6271 -4.6904 37 1 0.9791 -0.7909 -3.9851 38 1 0.3336 -0.4173 -5.6186 39 1 1.9975 -2.0858 -6.1303 40 1 3.1078 -1.4862 -4.8603 41 1 3.5835 -3.8344 -7.3839 42 1 2.1244 1.6184 -6.9560 43 1 3.6063 1.6426 -5.9599 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753434999.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:40 Heat of formation + Delta-G solvation = -26.505890 kcal Electronic energy + Delta-G solvation = -23630.629515 eV Core-core repulsion = 20291.812924 eV Total energy + Delta-G solvation = -3338.816591 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.34964 -38.40754 -36.80705 -34.54162 -32.92513 -32.25359 -31.10459 -29.53066 -28.42586 -27.09112 -26.58415 -24.21657 -22.59944 -20.87425 -20.06218 -19.50390 -18.52151 -17.11683 -17.00835 -16.51780 -16.29409 -15.68377 -15.02749 -14.74854 -14.30848 -13.89025 -13.68537 -13.11641 -12.91918 -12.74470 -12.50570 -12.39157 -12.24909 -12.11481 -11.93934 -11.73190 -11.61938 -11.46746 -11.03211 -10.95921 -10.92411 -10.72369 -10.26264 -10.12695 -10.05157 -9.96209 -9.72120 -9.55327 -9.02557 -8.71426 -8.26256 -6.91031 -5.71064 -3.14154 2.45998 2.82225 3.24731 3.35383 3.41114 3.43520 4.27484 4.43277 4.58020 4.74596 4.79613 5.16845 5.29564 5.36720 5.40782 5.41418 5.46016 5.47751 5.53078 5.66810 5.71461 5.75627 5.77080 5.86846 6.01257 6.10705 6.12863 6.30593 6.33992 6.48969 6.64583 6.70158 6.72678 6.91510 6.99924 7.47971 7.57172 7.63431 7.80430 7.81914 8.30147 8.40545 9.15407 9.75954 10.40267 11.32210 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031930 B = 0.004082 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.721259 B = 6857.687633 C = 6927.752928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.192 4.192 3 C 0.179 3.821 4 C -0.134 4.134 5 O -0.565 6.565 6 C -0.166 4.166 7 C 0.514 3.486 8 O -0.545 6.545 9 N -0.592 5.592 10 C 0.069 3.931 11 C 0.134 3.866 12 H 0.079 0.921 13 C -0.149 4.149 14 C 0.155 3.845 15 N -0.602 5.602 16 C -0.226 4.226 17 H 0.078 0.922 18 C -0.009 4.009 19 N -0.920 5.920 20 Si 0.914 3.086 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.126 3.874 25 H 0.092 0.908 26 H 0.101 0.899 27 H 0.108 0.892 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.388 0.612 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.097 0.903 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.105 0.895 40 H 0.010 0.990 41 H 0.252 0.748 42 H 0.034 0.966 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.385 7.925 13.307 15.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.210 4.210 3 C 0.137 3.863 4 C -0.191 4.191 5 O -0.376 6.376 6 C -0.206 4.206 7 C 0.303 3.697 8 O -0.424 6.424 9 N -0.324 5.324 10 C -0.074 4.074 11 C 0.031 3.969 12 H 0.097 0.903 13 C -0.189 4.189 14 C 0.031 3.969 15 N -0.329 5.329 16 C -0.354 4.354 17 H 0.096 0.904 18 C -0.205 4.205 19 N -0.568 5.568 20 Si 0.745 3.255 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.217 1.217 24 C -0.001 4.001 25 H 0.111 0.889 26 H 0.119 0.881 27 H 0.126 0.874 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.241 0.759 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.116 0.884 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.122 0.878 40 H 0.028 0.972 41 H 0.063 0.937 42 H 0.052 0.948 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -0.626 7.864 13.756 15.858 hybrid contribution 0.448 -0.561 -1.441 1.610 sum -0.178 7.303 12.315 14.319 Atomic orbital electron populations 1.23622 0.95971 1.01622 0.97515 1.23266 0.96879 0.97872 1.03015 1.19780 0.88096 0.85272 0.93119 1.21701 0.98730 1.02472 0.96199 1.86383 1.51092 1.48774 1.51393 1.22474 0.99828 1.04839 0.93490 1.20468 0.88699 0.76235 0.84320 1.90566 1.14690 1.51198 1.85981 1.47864 1.07341 1.71084 1.06133 1.21955 0.79627 1.01685 1.04178 1.22031 0.92576 0.98455 0.83856 0.90338 1.23317 0.99902 0.95108 1.00573 1.21905 0.90271 0.94289 0.90466 1.44556 1.62172 0.99014 1.27149 1.19109 1.24938 0.91547 0.99780 0.90396 1.24793 1.01027 0.95607 0.99028 1.69834 1.49398 0.99613 1.37961 0.86009 0.79248 0.78208 0.82066 1.20511 1.21764 1.21715 1.21634 0.96304 0.89710 0.92410 0.88941 0.88090 0.87397 0.91721 0.91652 0.91086 0.75877 0.88186 0.88177 0.92985 0.91754 0.88415 0.91809 0.91491 0.87763 0.97220 0.93749 0.94842 0.94831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 12.70 29.02 0.37 -1.60 16 2 C -0.19 -2.45 7.50 -36.02 -0.27 -2.72 16 3 C 0.18 2.14 1.08 -91.77 -0.10 2.04 16 4 C -0.13 -1.28 8.83 37.15 0.33 -0.95 16 5 O -0.56 -7.72 11.93 -53.41 -0.64 -8.36 16 6 C -0.17 -1.93 3.71 -27.88 -0.10 -2.04 16 7 C 0.51 7.74 6.83 -10.99 -0.07 7.66 16 8 O -0.54 -9.22 11.33 -12.63 -0.14 -9.37 16 9 N -0.59 -9.37 2.99 -171.83 -0.51 -9.88 16 10 C 0.07 0.96 8.93 59.84 0.53 1.49 16 11 C 0.13 2.42 3.14 -66.09 -0.21 2.21 16 12 H 0.08 1.37 8.08 -51.93 -0.42 0.95 16 13 C -0.15 -3.01 6.57 -24.58 -0.16 -3.17 16 14 C 0.16 3.72 5.86 -2.53 -0.01 3.71 16 15 N -0.60 -14.71 3.05 -170.07 -0.52 -15.23 16 16 C -0.23 -6.04 10.27 -15.06 -0.15 -6.19 16 17 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 18 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 19 N -0.92 -26.27 10.09 55.49 0.56 -25.71 16 20 Si 0.91 21.51 29.55 -169.99 -5.02 16.49 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 24 C 0.13 2.50 6.02 -3.06 -0.02 2.48 16 25 H 0.09 1.11 8.06 -52.49 -0.42 0.69 16 26 H 0.10 1.34 6.41 -52.48 -0.34 1.00 16 27 H 0.11 1.30 8.06 -52.48 -0.42 0.88 16 28 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.39 5.45 5.63 45.56 0.26 5.71 16 32 H 0.10 1.03 7.07 -51.93 -0.37 0.66 16 33 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.75 6.27 -51.93 -0.33 0.42 16 36 H 0.10 1.70 6.10 -51.93 -0.32 1.38 16 37 H 0.06 1.28 7.38 -51.93 -0.38 0.90 16 38 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.10 2.86 5.87 -51.93 -0.30 2.55 16 40 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 42 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.03 0.64 5.92 -51.93 -0.31 0.33 16 LS Contribution 333.32 15.07 5.02 5.02 Total: -1.00 -29.91 333.32 -7.50 -37.41 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -6.28 Total: 7.04 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: 0.03 Total: 2.59 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: -0.47 Total: -50.82 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.78 Total: -17.72 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.91 -7.50 -37.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753434999.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.902 kcal (2) G-P(sol) polarization free energy of solvation -29.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds