Wall clock time and date at job start Tue Mar 31 2020 05:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 120.00396 * 2 1 4 4 C 1.52992 * 109.47360 * 119.99836 * 3 2 1 5 5 O 1.42902 * 109.46859 * 359.97438 * 3 2 1 6 6 C 1.53008 * 109.47084 * 239.99932 * 3 2 1 7 7 C 1.50703 * 109.47173 * 57.36078 * 6 3 2 8 8 O 1.21282 * 120.00017 * 6.04053 * 7 6 3 9 9 N 1.34772 * 119.99901 * 186.04095 * 7 6 3 10 10 C 1.46491 * 120.00263 * 0.02562 * 9 7 6 11 11 C 1.46506 * 119.99686 * 180.02562 * 9 7 6 12 12 H 1.08998 * 110.64049 * 50.40705 * 11 9 7 13 13 C 1.55161 * 110.87224 * 287.15910 * 11 9 7 14 14 C 1.54907 * 101.57816 * 277.06981 * 13 11 9 15 15 N 1.47429 * 104.83462 * 322.99030 * 14 13 11 16 16 C 1.36939 * 125.64733 * 204.17155 * 15 14 13 17 17 H 1.08000 * 119.99680 * 179.97438 * 16 15 14 18 18 C 1.38814 * 120.00165 * 359.94995 * 16 15 14 19 19 N 1.31624 * 119.99722 * 0.02562 * 18 16 15 20 20 Si 1.86791 * 120.00149 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47329 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47376 * 120.00198 * 20 18 16 23 23 H 1.48500 * 109.47302 * 240.00444 * 20 18 16 24 24 C 1.47022 * 108.70228 * 24.12812 * 15 14 13 25 25 H 1.07993 * 120.00494 * 180.02562 * 1 2 3 26 26 H 1.08003 * 119.99470 * 0.02562 * 1 2 3 27 27 H 1.08007 * 119.99954 * 179.97438 * 2 1 3 28 28 H 1.09009 * 109.47325 * 184.76901 * 4 3 2 29 29 H 1.08996 * 109.47220 * 304.76716 * 4 3 2 30 30 H 1.08994 * 109.47577 * 64.77323 * 4 3 2 31 31 H 0.96699 * 114.00377 * 300.00495 * 5 3 2 32 32 H 1.09000 * 109.46464 * 297.36654 * 6 3 2 33 33 H 1.08996 * 109.47453 * 177.36329 * 6 3 2 34 34 H 1.09006 * 109.46865 * 269.71353 * 10 9 7 35 35 H 1.09004 * 109.47433 * 29.70887 * 10 9 7 36 36 H 1.08996 * 109.47512 * 149.71403 * 10 9 7 37 37 H 1.08995 * 111.00053 * 35.14453 * 13 11 9 38 38 H 1.09003 * 110.99994 * 158.99547 * 13 11 9 39 39 H 1.09005 * 110.36190 * 204.15457 * 14 13 11 40 40 H 1.08996 * 110.37035 * 81.83276 * 14 13 11 41 41 H 0.96998 * 119.99793 * 179.97438 * 19 18 16 42 42 H 1.08998 * 109.88442 * 239.52107 * 24 15 14 43 43 H 1.09003 * 109.87660 * 118.36018 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3861 1.2492 5 8 1.1350 2.3912 -0.0006 6 6 2.9432 1.3860 -1.2493 7 6 2.0840 1.2412 -2.4789 8 8 0.8766 1.1984 -2.3734 9 7 2.6575 1.1593 -3.6958 10 6 4.1159 1.2104 -3.8232 11 6 1.8222 1.0191 -4.8912 12 1 1.0363 1.7743 -4.9016 13 6 1.2149 -0.4062 -4.9772 14 6 2.3788 -1.2018 -5.6191 15 7 2.9839 -0.2699 -6.5881 16 6 3.7076 -0.6274 -7.6943 17 1 4.1105 0.1344 -8.3453 18 6 3.9238 -1.9688 -7.9785 19 7 3.4327 -2.8971 -7.1851 20 14 4.9116 -2.4564 -9.4871 21 1 5.3496 -1.2344 -10.2083 22 1 6.1033 -3.2368 -9.0675 23 1 4.0677 -3.2857 -10.3845 24 6 2.6807 1.1069 -6.1706 25 1 -0.5400 -0.9352 0.0004 26 1 -0.5399 0.9354 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 3.4230 2.3639 1.2929 29 1 2.3272 1.2437 2.1371 30 1 3.7059 0.6087 1.2076 31 1 0.5439 2.4030 -0.7658 32 1 3.6820 0.5849 -1.2259 33 1 3.4525 2.3494 -1.2733 34 1 4.4335 2.2455 -3.9494 35 1 4.5740 0.7969 -2.9247 36 1 4.4256 0.6271 -4.6904 37 1 0.9791 -0.7909 -3.9851 38 1 0.3336 -0.4173 -5.6186 39 1 1.9975 -2.0858 -6.1303 40 1 3.1078 -1.4862 -4.8603 41 1 3.5835 -3.8344 -7.3839 42 1 2.1244 1.6184 -6.9560 43 1 3.6063 1.6426 -5.9599 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753434999.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:39 Heat of formation + Delta-G solvation = -45.020684 kcal Electronic energy + Delta-G solvation = -23631.432377 eV Core-core repulsion = 20291.812924 eV Total energy + Delta-G solvation = -3339.619453 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.53741 -39.70511 -38.14207 -35.99662 -34.17651 -33.77941 -32.16027 -31.25441 -29.67956 -28.45307 -27.93562 -26.03029 -23.60206 -22.28554 -21.83356 -20.51432 -19.80746 -18.94408 -18.22214 -17.75567 -17.42461 -16.94545 -16.63977 -16.15947 -15.65770 -15.32417 -15.00599 -14.45461 -14.32467 -14.07817 -13.69881 -13.61912 -13.45182 -13.23667 -13.07148 -12.97786 -12.91514 -12.82299 -12.72638 -12.54757 -12.31545 -12.01035 -11.96872 -11.88631 -11.79150 -11.52905 -11.02550 -10.79689 -10.74154 -10.06301 -9.54700 -8.89673 -7.76968 -5.21689 1.46733 1.48400 1.49262 1.59255 1.67480 2.04591 2.50009 3.34568 3.36017 3.48128 3.69574 3.81403 3.86373 3.91230 4.04591 4.22815 4.27634 4.37329 4.48283 4.58644 4.60765 4.67550 4.70573 4.72853 4.89024 4.91847 4.95371 5.00916 5.03112 5.11137 5.15922 5.31127 5.46512 5.57201 5.63715 5.73762 5.79126 5.93486 6.28539 6.47083 6.75550 7.09949 7.23590 7.76904 8.40910 9.25148 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031930 B = 0.004082 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.721259 B = 6857.687633 C = 6927.752928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.195 4.195 3 C 0.172 3.828 4 C -0.131 4.131 5 O -0.574 6.574 6 C -0.158 4.158 7 C 0.509 3.491 8 O -0.567 6.567 9 N -0.598 5.598 10 C 0.070 3.930 11 C 0.147 3.853 12 H 0.090 0.910 13 C -0.136 4.136 14 C 0.168 3.832 15 N -0.618 5.618 16 C -0.234 4.234 17 H 0.085 0.915 18 C -0.065 4.065 19 N -0.950 5.950 20 Si 0.978 3.022 21 H -0.265 1.265 22 H -0.293 1.293 23 H -0.296 1.296 24 C 0.126 3.874 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.115 0.885 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.383 0.617 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.066 0.934 40 H -0.012 1.012 41 H 0.245 0.755 42 H 0.038 0.962 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.912 9.423 13.998 16.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.214 4.214 3 C 0.131 3.869 4 C -0.188 4.188 5 O -0.386 6.386 6 C -0.197 4.197 7 C 0.299 3.701 8 O -0.447 6.447 9 N -0.330 5.330 10 C -0.073 4.073 11 C 0.043 3.957 12 H 0.107 0.893 13 C -0.176 4.176 14 C 0.043 3.957 15 N -0.345 5.345 16 C -0.362 4.362 17 H 0.103 0.897 18 C -0.257 4.257 19 N -0.600 5.600 20 Si 0.807 3.193 21 H -0.189 1.189 22 H -0.220 1.220 23 H -0.223 1.223 24 C 0.001 3.999 25 H 0.114 0.886 26 H 0.113 0.887 27 H 0.133 0.867 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.110 0.890 31 H 0.236 0.764 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.006 0.994 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.683 9.404 14.464 17.266 hybrid contribution 0.022 -1.004 -1.624 1.910 sum 0.705 8.400 12.840 15.359 Atomic orbital electron populations 1.23679 0.96429 1.01589 0.98502 1.23503 0.96937 0.98776 1.02160 1.20029 0.88069 0.84308 0.94476 1.21728 0.98672 1.03790 0.94618 1.86386 1.51424 1.49480 1.51272 1.22504 0.99426 1.06718 0.91093 1.21103 0.88860 0.75322 0.84785 1.90568 1.15924 1.51952 1.86276 1.47929 1.07941 1.71427 1.05698 1.22017 0.78485 1.02845 1.03905 1.21775 0.92689 0.96938 0.84332 0.89255 1.23113 0.98367 0.96190 0.99898 1.21544 0.90792 0.93728 0.89660 1.44737 1.61982 1.00993 1.26757 1.19487 1.24533 0.91850 1.00366 0.89691 1.25590 1.02558 0.95758 1.01817 1.70082 1.50862 0.99443 1.39608 0.85004 0.77464 0.77993 0.78818 1.18896 1.22039 1.22296 1.21758 0.97356 0.87518 0.93315 0.88567 0.88720 0.86704 0.90826 0.92034 0.89032 0.76363 0.86295 0.85981 0.90401 0.89129 0.92002 0.91922 0.91650 0.91560 0.99364 0.94482 0.94436 0.93081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.24 12.70 67.79 0.86 -3.38 16 2 C -0.20 -4.71 7.50 25.65 0.19 -4.52 16 3 C 0.17 3.72 1.08 -11.54 -0.01 3.71 16 4 C -0.13 -2.10 8.83 71.98 0.64 -1.47 16 5 O -0.57 -14.80 11.93 -131.60 -1.57 -16.37 16 6 C -0.16 -3.15 3.71 29.85 0.11 -3.03 16 7 C 0.51 14.18 6.83 87.66 0.60 14.78 16 8 O -0.57 -18.43 11.33 14.35 0.16 -18.27 16 9 N -0.60 -17.65 2.99 -815.95 -2.44 -20.08 16 10 C 0.07 1.76 8.93 127.77 1.14 2.90 16 11 C 0.15 5.09 3.14 46.18 0.15 5.24 16 12 H 0.09 2.96 8.08 -2.39 -0.02 2.94 16 13 C -0.14 -5.48 6.57 31.99 0.21 -5.26 16 14 C 0.17 8.23 5.86 86.85 0.51 8.74 16 15 N -0.62 -30.26 3.05 -691.97 -2.11 -32.38 16 16 C -0.23 -12.50 10.27 84.03 0.86 -11.63 16 17 H 0.09 4.32 7.83 -2.91 -0.02 4.30 16 18 C -0.06 -3.56 5.49 84.86 0.47 -3.10 16 19 N -0.95 -55.74 10.09 21.65 0.22 -55.52 16 20 Si 0.98 44.45 29.55 68.60 2.03 46.48 16 21 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 22 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 23 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 24 C 0.13 4.84 6.02 86.73 0.52 5.36 16 25 H 0.10 2.31 8.06 -2.91 -0.02 2.28 16 26 H 0.09 2.52 6.41 -2.91 -0.02 2.50 16 27 H 0.12 2.56 8.06 -2.91 -0.02 2.54 16 28 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.38 10.44 5.63 -74.06 -0.42 10.02 16 32 H 0.12 1.96 7.07 -2.39 -0.02 1.94 16 33 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 35 H 0.09 1.79 6.27 -2.39 -0.01 1.77 16 36 H 0.06 2.06 6.10 -2.39 -0.01 2.04 16 37 H 0.06 2.52 7.38 -2.39 -0.02 2.50 16 38 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.07 3.79 5.87 -2.38 -0.01 3.77 16 40 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 41 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 42 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.05 1.83 5.92 -2.39 -0.01 1.81 16 Total: -1.00 -65.22 333.32 3.11 -62.11 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: 0.58 Total: 25.69 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 6.24 Total: 8.34 kcal Atomic # 7 Polarization: -103.65 SS G_CDS: -4.33 Total: -107.98 kcal Atomic # 8 Polarization: -33.23 SS G_CDS: -1.41 Total: -34.63 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -65.22 3.11 -62.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753434999.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.091 kcal (2) G-P(sol) polarization free energy of solvation -65.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds