Wall clock time and date at job start Tue Mar 31 2020 05:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47073 * 2 1 4 4 H 1.09004 * 110.54092 * 56.16375 * 3 2 1 5 5 C 1.54808 * 110.48871 * 293.54532 * 3 2 1 6 6 C 1.55001 * 102.09239 * 220.44327 * 5 3 2 7 7 O 1.44378 * 103.48950 * 37.02186 * 6 5 3 8 8 C 1.43742 * 106.97615 * 319.94100 * 7 6 5 9 9 H 1.09004 * 109.87848 * 267.08586 * 8 7 6 10 10 C 1.50701 * 109.87706 * 145.93672 * 8 7 6 11 11 O 1.21279 * 120.00166 * 356.45109 * 10 8 7 12 12 N 1.34778 * 119.99544 * 176.44892 * 10 8 7 13 13 C 1.46500 * 119.99809 * 179.97438 * 12 10 8 14 14 C 1.50698 * 109.47484 * 180.02562 * 13 12 10 15 15 C 1.31002 * 119.99826 * 127.15387 * 14 13 12 16 16 C 1.50695 * 120.00262 * 7.56851 * 15 14 13 17 17 N 1.46495 * 109.47364 * 126.99933 * 16 15 14 18 18 C 1.36940 * 120.00255 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99752 * 0.02562 * 18 17 16 20 20 C 1.38813 * 120.00036 * 179.97438 * 18 17 16 21 21 N 1.31612 * 120.00209 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99864 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46917 * 60.00420 * 22 20 18 24 24 H 1.48497 * 109.47238 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47209 * 300.00471 * 22 20 18 26 26 H 1.09001 * 109.47327 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47225 * 300.00044 * 1 2 3 28 28 H 1.08999 * 109.47291 * 59.99838 * 1 2 3 29 29 H 1.08999 * 109.47225 * 239.99956 * 2 1 3 30 30 H 1.08998 * 109.47033 * 119.99682 * 2 1 3 31 31 H 1.09010 * 110.90913 * 102.24601 * 5 3 2 32 32 H 1.09002 * 110.91071 * 338.64177 * 5 3 2 33 33 H 1.08997 * 110.62019 * 155.52770 * 6 5 3 34 34 H 1.08998 * 110.61858 * 278.36552 * 6 5 3 35 35 H 0.97002 * 120.00423 * 0.02562 * 12 10 8 36 36 H 1.09003 * 109.47455 * 300.00857 * 13 12 10 37 37 H 1.09001 * 109.46974 * 60.00477 * 13 12 10 38 38 H 1.08001 * 120.00246 * 307.16319 * 14 13 12 39 39 H 1.08000 * 119.99761 * 187.56319 * 15 14 13 40 40 H 1.09001 * 109.47082 * 247.00537 * 16 15 14 41 41 H 1.09006 * 109.46992 * 7.00123 * 16 15 14 42 42 H 0.97002 * 120.00243 * 0.02562 * 17 16 15 43 43 H 0.97001 * 120.00394 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6316 1.9925 0.8479 5 6 1.6744 2.1464 -1.3294 6 6 2.9597 2.9586 -1.6309 7 8 4.0213 2.0843 -1.1916 8 6 3.5804 1.4700 0.0308 9 1 3.9237 2.0546 0.8843 10 6 4.1163 0.0643 0.1202 11 8 4.7555 -0.4006 -0.7996 12 7 3.8851 -0.6761 1.2224 13 6 4.4055 -2.0428 1.3092 14 6 4.0107 -2.6478 2.6317 15 6 3.3983 -3.8054 2.6657 16 6 3.2402 -4.6116 1.4024 17 7 3.7519 -5.9668 1.6206 18 6 3.7121 -6.8854 0.6058 19 1 3.3039 -6.6107 -0.3555 20 6 4.1974 -8.1694 0.8125 21 7 4.6954 -8.5041 1.9839 22 14 4.1438 -9.4223 -0.5720 23 1 4.9351 -8.9208 -1.7242 24 1 4.7175 -10.7077 -0.0990 25 1 2.7357 -9.6344 -0.9934 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.8183 2.8081 -1.1967 32 1 1.4819 1.4167 -2.1159 33 1 3.0451 3.1597 -2.6987 34 1 2.9670 3.8898 -1.0644 35 1 3.3735 -0.3044 1.9580 36 1 3.9913 -2.6416 0.4979 37 1 5.4924 -2.0235 1.2281 38 1 4.2324 -2.1270 3.5515 39 1 3.0069 -4.1820 3.5991 40 1 2.1853 -4.6605 1.1322 41 1 3.8000 -4.1373 0.5962 42 1 4.1182 -6.2137 2.4842 43 1 5.0342 -9.4014 2.1285 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754134632.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:07 Heat of formation + Delta-G solvation = -46.746750 kcal Electronic energy + Delta-G solvation = -22350.975559 eV Core-core repulsion = 19011.281258 eV Total energy + Delta-G solvation = -3339.694301 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.87057 -38.59496 -36.51494 -35.25873 -34.29799 -32.80465 -30.75406 -30.45248 -29.64113 -26.52465 -24.95963 -23.95255 -22.95643 -22.47981 -21.38506 -20.13607 -18.67250 -17.30909 -17.07161 -16.64200 -16.49108 -15.91939 -15.09747 -14.89359 -14.82690 -14.55544 -14.29770 -13.71507 -13.56665 -13.37041 -13.19061 -12.84910 -12.63913 -12.52329 -12.30052 -11.93458 -11.73983 -11.57335 -11.40568 -10.98296 -10.96980 -10.88599 -10.77489 -10.42288 -10.29897 -10.05142 -9.77841 -9.61448 -9.12289 -8.98356 -8.57603 -6.91706 -5.76202 -3.05460 2.21535 2.57990 3.04598 3.46457 3.50372 3.51907 3.78210 4.04896 4.29575 4.45813 4.62372 4.67911 4.82069 4.87651 4.99311 5.05892 5.10617 5.15222 5.28109 5.29133 5.38481 5.48614 5.53886 5.56830 5.68826 5.71057 5.87190 5.89488 5.91091 5.96329 6.06329 6.24528 6.30834 6.47969 6.53831 6.58431 6.86784 7.13691 7.46764 7.70582 8.21334 8.42309 9.53626 10.09383 10.44664 11.46545 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023341 B = 0.003173 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.316622 B = 8823.664960 C = 8925.807984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.136 4.136 3 C -0.112 4.112 4 H 0.093 0.907 5 C -0.149 4.149 6 C 0.043 3.957 7 O -0.347 6.347 8 C 0.062 3.938 9 H 0.092 0.908 10 C 0.515 3.485 11 O -0.517 6.517 12 N -0.723 5.723 13 C 0.141 3.859 14 C -0.199 4.199 15 C -0.108 4.108 16 C 0.162 3.838 17 N -0.727 5.727 18 C -0.242 4.242 19 H 0.071 0.929 20 C -0.013 4.013 21 N -0.934 5.934 22 Si 0.909 3.091 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.285 1.285 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.063 0.937 35 H 0.399 0.601 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.028 0.972 41 H 0.036 0.964 42 H 0.385 0.615 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.275 25.531 0.136 26.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.174 4.174 3 C -0.131 4.131 4 H 0.111 0.889 5 C -0.186 4.186 6 C -0.033 4.033 7 O -0.264 6.264 8 C 0.000 4.000 9 H 0.110 0.890 10 C 0.299 3.701 11 O -0.392 6.392 12 N -0.377 5.377 13 C 0.019 3.981 14 C -0.219 4.219 15 C -0.128 4.128 16 C 0.035 3.965 17 N -0.372 5.372 18 C -0.373 4.373 19 H 0.089 0.911 20 C -0.209 4.209 21 N -0.582 5.582 22 Si 0.740 3.260 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.212 1.212 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.114 0.886 34 H 0.081 0.919 35 H 0.234 0.766 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.045 0.955 41 H 0.053 0.947 42 H 0.218 0.782 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.601 25.057 -0.829 26.197 hybrid contribution -0.281 -0.585 0.199 0.678 sum -7.882 24.472 -0.631 25.718 Atomic orbital electron populations 1.21750 0.95145 1.02200 1.01542 1.22035 0.96742 0.94505 1.04102 1.22580 0.92747 0.98409 0.99361 0.88913 1.23245 0.98472 0.99690 0.97235 1.23631 0.85782 0.92980 1.00955 1.89023 1.39046 1.59503 1.38859 1.22741 0.94512 0.92551 0.90183 0.89014 1.20264 0.80139 0.87019 0.82629 1.90755 1.38721 1.72295 1.37399 1.46169 1.56774 1.15522 1.19274 1.20567 0.99481 0.81046 0.97020 1.22582 1.03233 0.99023 0.97034 1.23296 0.94358 0.94769 1.00345 1.20007 0.97296 0.86539 0.92659 1.42257 1.74163 1.06386 1.14365 1.19206 1.34126 0.91283 0.92699 0.91114 1.24751 1.01436 0.97612 0.97066 1.69651 1.46743 1.19823 1.21984 0.86238 0.77654 0.80788 0.81353 1.21124 1.21643 1.21207 0.92209 0.92747 0.92819 0.91190 0.89836 0.89845 0.89926 0.88575 0.91923 0.76626 0.89247 0.91053 0.87051 0.86904 0.95470 0.94663 0.78164 0.93412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.76 37.16 0.36 -0.78 16 2 C -0.14 -1.23 4.11 -26.74 -0.11 -1.34 16 3 C -0.11 -0.85 3.08 -89.09 -0.27 -1.12 16 4 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 5 C -0.15 -1.05 5.84 -24.72 -0.14 -1.20 16 6 C 0.04 0.34 7.72 38.21 0.29 0.64 16 7 O -0.35 -4.33 10.74 -54.80 -0.59 -4.92 16 8 C 0.06 0.63 3.84 -27.31 -0.10 0.52 16 9 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 10 C 0.51 6.97 5.57 -10.98 -0.06 6.91 16 11 O -0.52 -9.74 16.53 -14.01 -0.23 -9.97 16 12 N -0.72 -8.14 3.82 -61.47 -0.23 -8.37 16 13 C 0.14 1.99 5.76 -5.19 -0.03 1.96 16 14 C -0.20 -2.63 9.63 -36.03 -0.35 -2.98 16 15 C -0.11 -1.72 9.63 -36.03 -0.35 -2.07 16 16 C 0.16 3.28 6.35 -5.20 -0.03 3.25 16 17 N -0.73 -18.81 5.59 -61.09 -0.34 -19.15 16 18 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 19 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -28.61 13.06 55.49 0.72 -27.88 16 22 Si 0.91 22.80 29.55 -169.99 -5.02 17.77 16 23 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.38 7.49 -51.93 -0.39 -0.01 16 29 H 0.07 0.83 7.62 -51.93 -0.40 0.44 16 30 H 0.08 0.76 5.14 -51.93 -0.27 0.49 16 31 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 32 H 0.08 0.68 7.83 -51.93 -0.41 0.27 16 33 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.40 3.17 7.53 -40.82 -0.31 2.86 16 36 H 0.09 1.48 5.30 -51.93 -0.28 1.20 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16 39 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 40 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.04 0.74 5.30 -51.93 -0.27 0.46 16 42 H 0.38 10.39 7.66 -40.82 -0.31 10.08 16 43 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 346.76 15.07 5.23 5.23 Total: -1.00 -34.88 346.76 -8.33 -43.21 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -6.82 Total: 7.85 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -1.04 Total: -3.77 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: 0.15 Total: -55.40 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.82 Total: -14.89 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.88 -8.33 -43.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754134632.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.535 kcal (2) G-P(sol) polarization free energy of solvation -34.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds