Wall clock time and date at job start Tue Mar 31 2020 05:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47413 * 2 1 4 4 H 1.08996 * 110.54105 * 56.16467 * 3 2 1 5 5 C 1.54806 * 110.49121 * 293.54811 * 3 2 1 6 6 C 1.54997 * 102.09416 * 220.44355 * 5 3 2 7 7 O 1.44381 * 103.48785 * 37.02188 * 6 5 3 8 8 C 1.43742 * 106.97650 * 319.93827 * 7 6 5 9 9 H 1.08999 * 109.88152 * 267.09068 * 8 7 6 10 10 C 1.50697 * 109.87889 * 146.08986 * 8 7 6 11 11 O 1.21283 * 119.99658 * 356.45659 * 10 8 7 12 12 N 1.34772 * 120.00337 * 176.45537 * 10 8 7 13 13 C 1.46501 * 120.00297 * 180.02562 * 12 10 8 14 14 C 1.50702 * 109.47027 * 180.02562 * 13 12 10 15 15 C 1.30992 * 119.99945 * 124.99785 * 14 13 12 16 16 C 1.50707 * 120.00093 * 179.97438 * 15 14 13 17 17 N 1.46497 * 109.46775 * 125.00012 * 16 15 14 18 18 C 1.36939 * 119.99841 * 180.02562 * 17 16 15 19 19 H 1.08007 * 119.99856 * 0.02562 * 18 17 16 20 20 C 1.38810 * 120.00118 * 180.02562 * 18 17 16 21 21 N 1.31614 * 120.00336 * 0.02562 * 20 18 17 22 22 Si 1.86809 * 119.99961 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46808 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46791 * 119.99966 * 22 20 18 25 25 H 1.48498 * 109.47012 * 240.00225 * 22 20 18 26 26 H 1.08998 * 109.47418 * 300.00092 * 1 2 3 27 27 H 1.09003 * 109.47077 * 59.99805 * 1 2 3 28 28 H 1.08999 * 109.47803 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46685 * 239.99998 * 2 1 3 30 30 H 1.09003 * 109.47077 * 120.00195 * 2 1 3 31 31 H 1.09001 * 110.91335 * 102.24158 * 5 3 2 32 32 H 1.09008 * 110.90423 * 338.64044 * 5 3 2 33 33 H 1.09004 * 110.61839 * 155.52512 * 6 5 3 34 34 H 1.08999 * 110.61464 * 278.35930 * 6 5 3 35 35 H 0.97000 * 119.99430 * 359.97438 * 12 10 8 36 36 H 1.08997 * 109.46854 * 299.99384 * 13 12 10 37 37 H 1.09002 * 109.47156 * 59.99865 * 13 12 10 38 38 H 1.07998 * 119.99735 * 304.99409 * 14 13 12 39 39 H 1.08006 * 120.00394 * 0.02562 * 15 14 13 40 40 H 1.08991 * 109.47165 * 245.00496 * 16 15 14 41 41 H 1.09004 * 109.46746 * 5.00517 * 16 15 14 42 42 H 0.97001 * 120.00367 * 0.02562 * 17 16 15 43 43 H 0.96994 * 120.00765 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6317 1.9925 0.8478 5 6 1.6745 2.1465 -1.3294 6 6 2.9598 2.9586 -1.6309 7 8 4.0214 2.0841 -1.1917 8 6 3.5805 1.4698 0.0308 9 1 3.9238 2.0544 0.8843 10 6 4.1193 0.0654 0.1219 11 8 4.7607 -0.3988 -0.7968 12 7 3.8885 -0.6747 1.2243 13 6 4.4128 -2.0398 1.3132 14 6 4.0175 -2.6447 2.6357 15 6 3.3710 -3.7835 2.6679 16 6 2.9762 -4.3887 3.9905 17 7 1.5328 -4.6390 4.0014 18 6 0.9416 -5.1889 5.1074 19 1 1.5394 -5.4378 5.9718 20 6 -0.4260 -5.4266 5.1176 21 7 -1.1545 -5.1239 4.0641 22 14 -1.2323 -6.1775 6.6262 23 1 -0.2021 -6.4240 7.6669 24 1 -2.2573 -5.2429 7.1564 25 1 -1.8783 -7.4619 6.2545 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3635 -1.0276 -0.0005 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.8185 2.8081 -1.1966 32 1 1.4820 1.4167 -2.1159 33 1 3.0451 3.1596 -2.6988 34 1 2.9671 3.8898 -1.0644 35 1 3.3759 -0.3033 1.9593 36 1 4.0014 -2.6405 0.5020 37 1 5.4997 -2.0175 1.2338 38 1 4.2673 -2.1392 3.5568 39 1 3.1216 -4.2892 1.7468 40 1 3.5091 -5.3286 4.1335 41 1 3.2316 -3.7000 4.7958 42 1 0.9958 -4.4151 3.2252 43 1 -2.1100 -5.2902 4.0710 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754134633.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:10 Heat of formation + Delta-G solvation = -56.369235 kcal Electronic energy + Delta-G solvation = -22201.496176 eV Core-core repulsion = 18861.384612 eV Total energy + Delta-G solvation = -3340.111563 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.85427 -38.57993 -36.27911 -35.22608 -34.45184 -32.81856 -30.88456 -30.45614 -29.58792 -27.03522 -24.49857 -23.76903 -22.93415 -21.94478 -21.28914 -20.25919 -19.31402 -17.31774 -17.12342 -17.00958 -16.37525 -15.54244 -15.16031 -14.90164 -14.75447 -14.62545 -13.99610 -13.76931 -13.58822 -13.38006 -13.25779 -12.90641 -12.63782 -12.32022 -12.04950 -11.89883 -11.82400 -11.51978 -11.32051 -11.06749 -10.88437 -10.86673 -10.78677 -10.64360 -10.29259 -10.07515 -9.84442 -9.66097 -9.21117 -8.97792 -8.71594 -6.98104 -5.81406 -3.10917 2.21590 2.53657 3.04249 3.40211 3.46086 3.48202 3.80646 4.11231 4.36608 4.48041 4.56400 4.70006 4.86299 4.93977 4.97548 5.09299 5.20974 5.23855 5.27100 5.37005 5.43032 5.51960 5.59449 5.60589 5.63564 5.77852 5.80897 5.97009 6.02254 6.05793 6.10319 6.21439 6.29715 6.43913 6.50158 6.54714 6.87528 7.11624 7.42927 7.65695 8.15438 8.36858 9.48447 10.04496 10.39862 11.41292 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021929 B = 0.003286 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.543000 B = 8519.191911 C = 9508.371806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.134 4.134 3 C -0.113 4.113 4 H 0.094 0.906 5 C -0.148 4.148 6 C 0.043 3.957 7 O -0.348 6.348 8 C 0.061 3.939 9 H 0.093 0.907 10 C 0.518 3.482 11 O -0.525 6.525 12 N -0.723 5.723 13 C 0.156 3.844 14 C -0.202 4.202 15 C -0.106 4.106 16 C 0.172 3.828 17 N -0.730 5.730 18 C -0.242 4.242 19 H 0.072 0.928 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.908 3.092 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.063 0.937 35 H 0.404 0.596 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.115 0.885 39 H 0.109 0.891 40 H 0.031 0.969 41 H 0.026 0.974 42 H 0.385 0.615 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.102 16.643 -8.766 20.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.172 4.172 3 C -0.132 4.132 4 H 0.113 0.887 5 C -0.186 4.186 6 C -0.033 4.033 7 O -0.266 6.266 8 C 0.000 4.000 9 H 0.111 0.889 10 C 0.303 3.697 11 O -0.400 6.400 12 N -0.377 5.377 13 C 0.033 3.967 14 C -0.221 4.221 15 C -0.125 4.125 16 C 0.045 3.955 17 N -0.374 5.374 18 C -0.373 4.373 19 H 0.090 0.910 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.739 3.261 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.081 0.919 35 H 0.239 0.761 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.133 0.867 39 H 0.127 0.873 40 H 0.049 0.951 41 H 0.043 0.957 42 H 0.219 0.781 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.772 16.188 -9.383 20.261 hybrid contribution -1.156 -0.121 1.052 1.568 sum 6.616 16.067 -8.331 19.270 Atomic orbital electron populations 1.21749 0.94839 1.02588 1.01544 1.22010 0.97090 0.94305 1.03760 1.22593 0.92507 0.98611 0.99449 0.88742 1.23237 0.98461 0.99673 0.97221 1.23635 0.85809 0.93015 1.00867 1.88999 1.39149 1.59540 1.38887 1.22738 0.94698 0.92412 0.90168 0.88943 1.20287 0.79851 0.87075 0.82447 1.90717 1.39156 1.72481 1.37627 1.46194 1.56539 1.15477 1.19526 1.20313 0.98829 0.81535 0.95983 1.22683 1.04045 0.98249 0.97128 1.23337 0.93484 0.95607 1.00072 1.19826 0.87358 0.96819 0.91461 1.42300 1.01324 1.75674 1.18088 1.19287 0.91071 1.33082 0.93828 0.91041 1.24756 0.96334 1.02055 0.97762 1.69668 1.05828 1.53750 1.28784 0.86105 0.79304 0.78561 0.82145 1.20508 1.21813 1.21794 0.92491 0.92996 0.91925 0.91542 0.89815 0.89759 0.89992 0.88616 0.91880 0.76057 0.91161 0.91082 0.86741 0.87276 0.95146 0.95669 0.78139 0.93510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.76 37.16 0.36 -1.18 16 2 C -0.13 -1.42 4.11 -26.74 -0.11 -1.53 16 3 C -0.11 -0.99 3.08 -89.10 -0.27 -1.26 16 4 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 5 C -0.15 -1.17 5.84 -24.73 -0.14 -1.31 16 6 C 0.04 0.36 7.72 38.21 0.29 0.65 16 7 O -0.35 -4.35 10.74 -54.80 -0.59 -4.94 16 8 C 0.06 0.65 3.84 -27.31 -0.10 0.55 16 9 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 10 C 0.52 6.88 5.58 -10.99 -0.06 6.82 16 11 O -0.52 -9.27 16.53 -14.01 -0.23 -9.50 16 12 N -0.72 -8.22 3.83 -61.47 -0.24 -8.45 16 13 C 0.16 1.94 6.11 -5.19 -0.03 1.91 16 14 C -0.20 -2.64 9.24 -36.02 -0.33 -2.97 16 15 C -0.11 -1.66 9.24 -36.02 -0.33 -2.00 16 16 C 0.17 3.38 6.70 -5.19 -0.03 3.34 16 17 N -0.73 -18.25 5.59 -61.08 -0.34 -18.59 16 18 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 19 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -27.80 13.06 55.49 0.72 -27.07 16 22 Si 0.91 22.09 29.55 -169.99 -5.02 17.06 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.47 7.49 -51.93 -0.39 0.08 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.83 7.62 -51.93 -0.40 0.44 16 30 H 0.08 0.93 5.15 -51.93 -0.27 0.66 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.72 7.83 -51.92 -0.41 0.32 16 33 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.40 3.78 7.53 -40.82 -0.31 3.47 16 36 H 0.07 0.95 7.79 -51.93 -0.40 0.54 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.11 1.41 7.84 -52.49 -0.41 1.00 16 39 H 0.11 1.70 7.84 -52.48 -0.41 1.29 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.03 0.49 7.79 -51.93 -0.40 0.09 16 42 H 0.39 10.11 7.66 -40.82 -0.31 9.80 16 43 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 LS Contribution 351.28 15.07 5.29 5.29 Total: -1.00 -33.41 351.28 -8.48 -41.89 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -7.06 Total: 8.59 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -1.02 Total: -4.28 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: 0.15 Total: -54.12 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.82 Total: -14.43 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.41 -8.48 -41.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754134633.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.483 kcal (2) G-P(sol) polarization free energy of solvation -33.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds