Wall clock time and date at job start Tue Mar 31 2020 05:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50708 * 119.99629 * 2 1 4 4 C 1.53003 * 109.46761 * 120.00035 * 3 2 1 5 5 O 1.42902 * 109.47015 * 0.02562 * 3 2 1 6 6 C 1.52998 * 109.47119 * 239.99849 * 3 2 1 7 7 C 1.50703 * 109.46863 * 55.89799 * 6 3 2 8 8 O 1.21279 * 120.00017 * 5.63282 * 7 6 3 9 9 N 1.34776 * 119.99934 * 185.62478 * 7 6 3 10 10 C 1.46499 * 120.00243 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.47058 * 35.00074 * 10 9 7 12 12 C 1.53000 * 109.47212 * 155.00271 * 10 9 7 13 13 N 1.46500 * 109.46962 * 304.99834 * 12 10 9 14 14 C 1.36936 * 119.99580 * 180.02562 * 13 12 10 15 15 H 1.07992 * 120.00624 * 0.02562 * 14 13 12 16 16 C 1.38819 * 119.99577 * 180.02562 * 14 13 12 17 17 N 1.31620 * 120.00234 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99665 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47191 * 90.00374 * 18 16 14 20 20 H 1.48505 * 109.46735 * 209.99884 * 18 16 14 21 21 H 1.48499 * 109.47270 * 329.99716 * 18 16 14 22 22 C 1.53004 * 109.47195 * 275.00559 * 10 9 7 23 23 C 1.52990 * 117.50200 * 128.74396 * 22 10 9 24 24 C 1.52999 * 117.50053 * 60.08146 * 22 10 9 25 25 H 1.07998 * 119.99383 * 180.02562 * 1 2 3 26 26 H 1.07993 * 120.00323 * 0.02562 * 1 2 3 27 27 H 1.07993 * 120.00323 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47158 * 304.93905 * 4 3 2 29 29 H 1.09001 * 109.47411 * 64.94214 * 4 3 2 30 30 H 1.09002 * 109.46601 * 184.94071 * 4 3 2 31 31 H 0.96700 * 113.99867 * 299.99498 * 5 3 2 32 32 H 1.08994 * 109.47163 * 175.90099 * 6 3 2 33 33 H 1.09001 * 109.47154 * 295.90399 * 6 3 2 34 34 H 0.96998 * 120.00070 * 0.02562 * 9 7 6 35 35 H 1.08999 * 109.46853 * 65.00118 * 12 10 9 36 36 H 1.09000 * 109.46752 * 185.00174 * 12 10 9 37 37 H 0.96998 * 120.00427 * 359.97438 * 13 12 10 38 38 H 0.96999 * 119.99719 * 179.97438 * 17 16 14 39 39 H 1.08998 * 115.54294 * 274.41834 * 22 10 9 40 40 H 1.09003 * 117.50077 * 359.97438 * 23 22 10 41 41 H 1.08999 * 117.49930 * 145.01953 * 23 22 10 42 42 H 1.09000 * 117.49902 * 214.98234 * 24 22 10 43 43 H 1.09004 * 117.49582 * 359.97438 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.9431 1.3862 1.2493 5 8 1.1348 2.3913 0.0006 6 6 2.9431 1.3863 -1.2492 7 6 2.0890 1.2055 -2.4776 8 8 0.8830 1.1314 -2.3721 9 7 2.6652 1.1262 -3.6933 10 6 1.8349 0.9509 -4.8875 11 1 0.8971 1.4917 -4.7606 12 6 2.5770 1.4966 -6.1092 13 7 2.9624 2.8887 -5.8649 14 6 3.6418 3.5896 -6.8252 15 1 3.8932 3.1163 -7.7628 16 6 4.0075 4.9085 -6.5935 17 7 3.7007 5.4855 -5.4510 18 14 4.9337 5.8649 -7.9038 19 1 3.9636 6.5509 -8.7946 20 1 5.8087 6.8739 -7.2545 21 1 5.7653 4.9303 -8.7039 22 6 1.5420 -0.5369 -5.0912 23 6 0.0817 -0.9492 -5.2866 24 6 0.7987 -1.2702 -3.9728 25 1 -0.5399 -0.9354 0.0004 26 1 -0.5400 0.9352 -0.0004 27 1 1.8500 -0.9352 0.0004 28 1 2.3276 1.2406 2.1371 29 1 3.7079 0.6108 1.2062 30 1 3.4204 2.3651 1.2946 31 1 0.5432 2.4034 -0.7643 32 1 3.4321 2.3597 -1.2867 33 1 3.6985 0.6013 -1.2132 34 1 3.6297 1.1851 -3.7777 35 1 3.4703 0.8983 -6.2888 36 1 1.9255 1.4477 -6.9817 37 1 2.7357 3.3142 -5.0232 38 1 3.9566 6.4070 -5.2890 39 1 2.3003 -1.0943 -5.6412 40 1 -0.6706 -0.1605 -5.2696 41 1 -0.1209 -1.7780 -5.9649 42 1 1.0676 -2.3101 -3.7874 43 1 0.5188 -0.6927 -3.0918 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754439534.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:15 Heat of formation + Delta-G solvation = -33.121088 kcal Electronic energy + Delta-G solvation = -23252.511385 eV Core-core repulsion = 19913.407937 eV Total energy + Delta-G solvation = -3339.103448 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.23760 -38.29567 -36.67220 -35.01061 -33.42903 -32.82044 -31.47456 -30.83822 -28.73459 -27.27706 -24.04299 -22.54509 -22.12942 -21.51505 -20.69940 -20.00850 -19.43400 -17.38007 -16.95321 -16.49962 -16.26237 -15.49842 -15.12134 -14.90153 -14.49275 -14.24235 -13.81211 -13.46918 -13.15797 -12.91010 -12.59419 -12.46620 -12.18486 -12.11447 -11.91860 -11.72840 -11.54920 -11.19369 -11.06488 -10.91934 -10.87249 -10.82832 -10.21028 -10.16287 -9.98725 -9.93100 -9.72633 -9.66255 -9.01623 -8.91575 -8.61781 -6.99500 -5.81123 -3.11138 2.45729 2.89306 3.38629 3.41286 3.46083 3.47572 4.12863 4.36867 4.53143 4.78641 4.83512 4.88760 4.93075 5.15946 5.25742 5.32717 5.35499 5.47441 5.51507 5.54384 5.65495 5.76091 5.79253 5.83763 5.85158 5.90059 6.06911 6.08966 6.13881 6.20945 6.34953 6.47328 6.51925 6.65916 6.70977 6.91300 6.94128 7.65296 7.84423 7.89559 8.36633 8.53589 9.48598 10.03883 10.39414 11.41138 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016275 B = 0.004968 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.999587 B = 5635.253732 C = 6956.315699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.188 4.188 3 C 0.180 3.820 4 C -0.135 4.135 5 O -0.561 6.561 6 C -0.170 4.170 7 C 0.521 3.479 8 O -0.547 6.547 9 N -0.705 5.705 10 C 0.169 3.831 11 H 0.087 0.913 12 C 0.148 3.852 13 N -0.731 5.731 14 C -0.244 4.244 15 H 0.070 0.930 16 C -0.011 4.011 17 N -0.931 5.931 18 Si 0.907 3.093 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.282 1.282 22 C -0.163 4.163 23 C -0.172 4.172 24 C -0.184 4.184 25 H 0.090 0.910 26 H 0.102 0.898 27 H 0.105 0.895 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.388 0.612 32 H 0.107 0.893 33 H 0.097 0.903 34 H 0.404 0.596 35 H 0.024 0.976 36 H 0.034 0.966 37 H 0.386 0.614 38 H 0.256 0.744 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.734 -13.913 9.725 17.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.206 4.206 3 C 0.138 3.862 4 C -0.192 4.192 5 O -0.372 6.372 6 C -0.210 4.210 7 C 0.308 3.692 8 O -0.427 6.427 9 N -0.354 5.354 10 C 0.064 3.936 11 H 0.105 0.895 12 C 0.020 3.980 13 N -0.376 5.376 14 C -0.375 4.375 15 H 0.088 0.912 16 C -0.207 4.207 17 N -0.579 5.579 18 Si 0.738 3.262 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.182 4.182 23 C -0.209 4.209 24 C -0.221 4.221 25 H 0.108 0.892 26 H 0.120 0.880 27 H 0.123 0.877 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.241 0.759 32 H 0.125 0.875 33 H 0.115 0.885 34 H 0.239 0.761 35 H 0.042 0.958 36 H 0.052 0.948 37 H 0.220 0.780 38 H 0.066 0.934 39 H 0.119 0.881 40 H 0.112 0.888 41 H 0.106 0.894 42 H 0.098 0.902 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.190 -13.761 10.171 17.406 hybrid contribution 0.753 0.471 -1.285 1.562 sum -2.437 -13.290 8.886 16.171 Atomic orbital electron populations 1.23609 0.95976 1.01546 0.97774 1.23246 0.96774 0.97796 1.02783 1.19745 0.88124 0.85197 0.93112 1.21708 0.98672 1.02662 0.96166 1.86419 1.50956 1.48688 1.51169 1.22453 0.99761 1.05405 0.93419 1.20449 0.88781 0.75259 0.84688 1.90521 1.14774 1.51082 1.86293 1.45982 1.11076 1.72577 1.05775 1.20777 0.95464 0.92308 0.85005 0.89454 1.20914 0.96023 0.87507 0.93593 1.42336 1.68274 1.07567 1.19425 1.19209 1.28123 0.93896 0.96275 0.91156 1.24749 1.01613 0.97070 0.97288 1.69664 1.51679 1.13108 1.23425 0.86192 0.79344 0.79825 0.80808 1.21680 1.21757 1.20759 1.22642 0.95330 0.96423 1.03851 1.22882 0.94690 1.03154 1.00198 1.23283 1.04027 1.00385 0.94439 0.89179 0.87999 0.87671 0.91762 0.91247 0.91495 0.75883 0.87488 0.88476 0.76147 0.95850 0.94813 0.78012 0.93441 0.88094 0.88788 0.89361 0.90195 0.86111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 12.63 29.01 0.37 -1.49 16 2 C -0.19 -2.22 7.43 -36.02 -0.27 -2.48 16 3 C 0.18 2.21 1.08 -91.77 -0.10 2.11 16 4 C -0.13 -1.38 8.82 37.16 0.33 -1.05 16 5 O -0.56 -8.35 11.94 -52.34 -0.62 -8.97 16 6 C -0.17 -2.07 4.99 -27.88 -0.14 -2.21 16 7 C 0.52 7.61 6.64 -10.98 -0.07 7.53 16 8 O -0.55 -8.73 8.98 -11.55 -0.10 -8.83 16 9 N -0.71 -10.60 4.50 -53.80 -0.24 -10.84 16 10 C 0.17 2.75 2.43 -67.93 -0.17 2.58 16 11 H 0.09 1.62 7.34 -51.93 -0.38 1.24 16 12 C 0.15 2.83 5.80 -4.04 -0.02 2.81 16 13 N -0.73 -17.78 5.43 -59.91 -0.33 -18.10 16 14 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 15 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 16 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 17 N -0.93 -27.71 13.06 55.49 0.72 -26.98 16 18 Si 0.91 22.07 29.55 -169.99 -5.02 17.04 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 22 C -0.16 -2.25 5.36 -90.62 -0.49 -2.74 16 23 C -0.17 -2.22 10.18 -26.70 -0.27 -2.49 16 24 C -0.18 -2.44 9.74 -26.69 -0.26 -2.70 16 25 H 0.09 0.97 8.06 -52.49 -0.42 0.55 16 26 H 0.10 1.33 6.41 -52.49 -0.34 1.00 16 27 H 0.11 1.10 8.06 -52.49 -0.42 0.68 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.39 5.93 5.78 45.56 0.26 6.19 16 32 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.40 5.88 8.60 -40.82 -0.35 5.53 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.39 10.00 7.33 -40.82 -0.30 9.70 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.10 1.32 8.11 -51.93 -0.42 0.90 16 40 H 0.09 1.28 8.05 -51.93 -0.42 0.86 16 41 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.12 1.80 5.02 -51.93 -0.26 1.54 16 LS Contribution 347.55 15.07 5.24 5.24 Total: -1.00 -30.15 347.55 -8.10 -38.24 By element: Atomic # 1 Polarization: 26.93 SS G_CDS: -6.40 Total: 20.53 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -1.34 Total: -7.32 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: 0.16 Total: -55.93 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.73 Total: -17.81 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.15 -8.10 -38.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754439534.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.121 kcal (2) G-P(sol) polarization free energy of solvation -30.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds