Wall clock time and date at job start Tue Mar 31 2020 05:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50697 * 120.00433 * 2 1 4 4 C 1.52999 * 109.47043 * 240.00069 * 3 2 1 5 5 O 1.42906 * 109.47083 * 359.97438 * 3 2 1 6 6 C 1.52998 * 109.47361 * 119.99891 * 3 2 1 7 7 C 1.50694 * 109.47186 * 180.02562 * 6 3 2 8 8 O 1.21285 * 119.99936 * 359.97438 * 7 6 3 9 9 N 1.34776 * 120.00347 * 180.02562 * 7 6 3 10 10 C 1.46495 * 120.00573 * 179.97438 * 9 7 6 11 11 H 1.09005 * 109.46990 * 325.00265 * 10 9 7 12 12 C 1.52997 * 109.47430 * 204.99724 * 10 9 7 13 13 N 1.46510 * 109.46971 * 55.00029 * 12 10 9 14 14 C 1.36928 * 119.99813 * 179.97438 * 13 12 10 15 15 H 1.08002 * 120.00208 * 0.02562 * 14 13 12 16 16 C 1.38818 * 119.99781 * 179.97438 * 14 13 12 17 17 N 1.31620 * 119.99656 * 180.02562 * 16 14 13 18 18 Si 1.86792 * 120.00029 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47394 * 89.99690 * 18 16 14 20 20 H 1.48502 * 109.47410 * 209.99835 * 18 16 14 21 21 H 1.48506 * 109.47406 * 329.99987 * 18 16 14 22 22 C 1.53003 * 109.47194 * 84.99642 * 10 9 7 23 23 C 1.53001 * 117.51964 * 231.28709 * 22 10 9 24 24 C 1.52999 * 60.00190 * 107.47982 * 23 22 10 25 25 H 1.08002 * 120.00598 * 180.02562 * 1 2 3 26 26 H 1.08010 * 119.99613 * 0.02562 * 1 2 3 27 27 H 1.07996 * 119.99607 * 179.97438 * 2 1 3 28 28 H 1.08995 * 109.47069 * 299.99629 * 4 3 2 29 29 H 1.09008 * 109.47323 * 59.99804 * 4 3 2 30 30 H 1.09000 * 109.47348 * 179.97438 * 4 3 2 31 31 H 0.96697 * 114.00159 * 59.99723 * 5 3 2 32 32 H 1.08995 * 109.47186 * 60.00104 * 6 3 2 33 33 H 1.09005 * 109.46828 * 300.00155 * 6 3 2 34 34 H 0.97002 * 119.99812 * 359.97438 * 9 7 6 35 35 H 1.08998 * 109.47132 * 174.99771 * 12 10 9 36 36 H 1.08998 * 109.47469 * 295.00258 * 12 10 9 37 37 H 0.96992 * 119.99894 * 0.02562 * 13 12 10 38 38 H 0.97009 * 119.99887 * 180.02562 * 17 16 14 39 39 H 1.09002 * 115.54973 * 85.58492 * 22 10 9 40 40 H 1.09001 * 117.49733 * 214.97413 * 23 22 10 41 41 H 1.08995 * 117.49577 * 359.97438 * 23 22 10 42 42 H 1.09004 * 117.50150 * 252.51496 * 24 23 22 43 43 H 1.09004 * 117.49681 * 107.48417 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.9432 1.3860 -1.2492 5 8 1.1350 2.3913 -0.0006 6 6 2.9432 1.3861 1.2492 7 6 3.6963 2.6913 1.2495 8 8 3.5448 3.4791 0.3398 9 7 4.5390 2.9830 2.2601 10 6 5.2715 4.2517 2.2601 11 1 5.5304 4.5217 1.2363 12 6 6.5500 4.1024 3.0871 13 7 7.3338 2.9753 2.5754 14 6 8.5271 2.6488 3.1623 15 1 8.8903 3.2218 4.0026 16 6 9.2695 1.5805 2.6777 17 7 10.4162 1.2663 3.2422 18 14 8.6409 0.5890 1.2248 19 1 9.1424 1.1886 -0.0378 20 1 9.1245 -0.8108 1.3343 21 1 7.1559 0.6009 1.2227 22 6 4.3945 5.3470 2.8701 23 6 4.2237 6.6417 2.0729 24 6 3.0626 5.6511 2.1812 25 1 -0.5401 -0.9353 0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8499 -0.9353 0.0004 28 1 3.6515 0.5575 -1.2492 29 1 2.3165 1.3283 -2.1393 30 1 3.4880 2.3301 -1.2495 31 1 0.5434 2.4034 0.7642 32 1 3.6515 0.5576 1.2493 33 1 2.3165 1.3284 2.1392 34 1 4.6605 2.3529 2.9874 35 1 7.1386 5.0169 3.0144 36 1 6.2893 3.9200 4.1296 37 1 7.0078 2.4609 1.8205 38 1 10.9352 0.5200 2.9034 39 1 4.4286 5.4258 3.9568 40 1 4.1454 7.5722 2.6351 41 1 4.7364 6.7135 1.1138 42 1 2.8114 5.0711 1.2932 43 1 2.2206 5.9300 2.8147 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754439547.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:18 Heat of formation + Delta-G solvation = -24.855451 kcal Electronic energy + Delta-G solvation = -23198.079796 eV Core-core repulsion = 19859.334773 eV Total energy + Delta-G solvation = -3338.745023 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.26232 -38.49972 -36.90801 -35.16664 -33.47436 -33.12021 -31.57064 -31.15977 -28.97756 -27.41293 -24.00724 -22.96792 -22.13657 -21.33555 -20.57608 -20.05651 -19.78889 -17.87315 -17.23179 -16.63117 -16.03428 -15.56058 -15.48810 -14.93782 -14.69685 -14.43638 -13.87794 -13.71638 -13.19943 -13.08061 -12.81052 -12.37676 -12.34357 -12.15823 -11.95211 -11.76101 -11.59519 -11.25000 -11.20771 -11.18311 -11.03939 -10.90021 -10.30455 -10.23897 -10.13336 -9.94132 -9.67595 -9.64266 -9.35713 -8.97342 -8.66756 -7.30723 -5.82416 -3.18588 1.96710 2.82746 3.29653 3.30474 3.36200 3.41014 4.05944 4.18760 4.53534 4.56525 4.62200 4.75517 4.86175 5.02482 5.09936 5.15050 5.25610 5.36947 5.44218 5.47385 5.53780 5.60110 5.61588 5.76974 5.83467 5.83586 5.91916 5.99200 6.08954 6.25136 6.30182 6.34603 6.42683 6.48691 6.52853 6.61934 6.86774 7.57837 7.77457 7.93185 8.36140 8.49137 9.14959 9.87022 10.06690 11.35813 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.013641 B = 0.005879 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.217220 B = 4761.503275 C = 6380.709991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.184 4.184 3 C 0.179 3.821 4 C -0.149 4.149 5 O -0.537 6.537 6 C -0.169 4.169 7 C 0.516 3.484 8 O -0.522 6.522 9 N -0.715 5.715 10 C 0.166 3.834 11 H 0.087 0.913 12 C 0.153 3.847 13 N -0.755 5.755 14 C -0.246 4.246 15 H 0.091 0.909 16 C 0.007 3.993 17 N -0.932 5.932 18 Si 0.884 3.116 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.279 1.279 22 C -0.163 4.163 23 C -0.171 4.171 24 C -0.184 4.184 25 H 0.098 0.902 26 H 0.104 0.896 27 H 0.115 0.885 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.096 0.904 31 H 0.366 0.634 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.402 0.598 35 H 0.043 0.957 36 H 0.032 0.968 37 H 0.362 0.638 38 H 0.260 0.740 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.121 0.879 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.451 0.995 -3.131 20.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.202 4.202 3 C 0.138 3.862 4 C -0.205 4.205 5 O -0.341 6.341 6 C -0.209 4.209 7 C 0.302 3.698 8 O -0.399 6.399 9 N -0.366 5.366 10 C 0.061 3.939 11 H 0.105 0.895 12 C 0.025 3.975 13 N -0.401 5.401 14 C -0.376 4.376 15 H 0.109 0.891 16 C -0.189 4.189 17 N -0.580 5.580 18 Si 0.714 3.286 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.205 1.205 22 C -0.183 4.183 23 C -0.209 4.209 24 C -0.220 4.220 25 H 0.117 0.883 26 H 0.122 0.878 27 H 0.133 0.867 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.115 0.885 31 H 0.213 0.787 32 H 0.120 0.880 33 H 0.112 0.888 34 H 0.237 0.763 35 H 0.061 0.939 36 H 0.050 0.950 37 H 0.195 0.805 38 H 0.070 0.930 39 H 0.121 0.879 40 H 0.108 0.892 41 H 0.112 0.888 42 H 0.139 0.861 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -20.023 1.704 -4.190 20.527 hybrid contribution -0.468 -1.426 0.083 1.503 sum -20.490 0.279 -4.107 20.900 Atomic orbital electron populations 1.23842 0.95999 1.02273 1.00009 1.23662 0.96765 0.98992 1.00820 1.19820 0.87876 0.83862 0.94644 1.21954 0.98835 1.04641 0.95107 1.86729 1.49988 1.48954 1.48454 1.22412 1.00549 0.97562 1.00425 1.20302 0.79425 0.88033 0.82052 1.90591 1.64294 1.49815 1.35247 1.46080 1.44147 1.20959 1.25384 1.20825 0.90374 0.81922 1.00780 0.89486 1.20898 0.89085 0.92101 0.95419 1.42685 1.23428 1.35178 1.38801 1.19052 0.94566 1.11651 1.12346 0.89115 1.24659 0.96625 0.98687 0.98952 1.69701 1.14086 1.31055 1.43150 0.86569 0.78111 0.80111 0.83787 1.21064 1.21703 1.20484 1.22618 0.99903 0.97252 0.98541 1.22880 1.03197 0.93062 1.01765 1.23279 0.91068 1.03588 1.04104 0.88336 0.87752 0.86656 0.91876 0.92354 0.88525 0.78735 0.87991 0.88812 0.76321 0.93878 0.94970 0.80464 0.93003 0.87905 0.89242 0.88806 0.86107 0.90054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.51 13.93 29.01 0.40 -1.11 16 2 C -0.18 -1.71 8.77 -36.03 -0.32 -2.03 16 3 C 0.18 2.01 0.94 -91.77 -0.09 1.93 16 4 C -0.15 -1.91 8.50 37.16 0.32 -1.60 16 5 O -0.54 -6.36 10.84 -53.50 -0.58 -6.94 16 6 C -0.17 -1.86 4.93 -27.89 -0.14 -2.00 16 7 C 0.52 7.31 6.72 -10.99 -0.07 7.24 16 8 O -0.52 -8.70 9.99 -12.71 -0.13 -8.82 16 9 N -0.71 -10.27 4.50 -53.81 -0.24 -10.51 16 10 C 0.17 2.59 2.43 -67.93 -0.17 2.43 16 11 H 0.09 1.54 7.34 -51.93 -0.38 1.16 16 12 C 0.15 2.81 5.80 -4.04 -0.02 2.79 16 13 N -0.75 -17.29 5.24 -59.91 -0.31 -17.61 16 14 C -0.25 -6.81 10.47 -15.06 -0.16 -6.97 16 15 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 16 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 17 N -0.93 -28.89 13.97 55.49 0.78 -28.12 16 18 Si 0.88 21.85 27.73 -169.99 -4.71 17.14 16 19 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 22 C -0.16 -2.20 5.36 -90.61 -0.49 -2.69 16 23 C -0.17 -2.19 10.18 -26.73 -0.27 -2.47 16 24 C -0.18 -2.41 9.73 -26.73 -0.26 -2.67 16 25 H 0.10 0.68 8.06 -52.49 -0.42 0.25 16 26 H 0.10 0.82 6.41 -52.48 -0.34 0.48 16 27 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 30 H 0.10 1.50 5.51 -51.93 -0.29 1.22 16 31 H 0.37 3.07 8.05 45.56 0.37 3.44 16 32 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.40 5.43 8.60 -40.82 -0.35 5.08 16 35 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.36 8.25 5.20 -40.82 -0.21 8.04 16 38 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 39 H 0.10 1.30 8.11 -51.93 -0.42 0.88 16 40 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.09 1.27 8.05 -51.93 -0.42 0.85 16 42 H 0.12 1.85 5.02 -51.93 -0.26 1.59 16 43 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 346.20 15.07 5.22 5.22 Total: -1.00 -32.33 346.20 -7.46 -39.79 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: -6.12 Total: 16.91 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -1.35 Total: -7.05 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 0.22 Total: -56.24 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -0.71 Total: -15.77 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.14 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.33 -7.46 -39.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754439547.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.933 kcal (2) G-P(sol) polarization free energy of solvation -32.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds