Wall clock time and date at job start Tue Mar 31 2020 05:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 119.99798 * 2 1 4 4 C 1.52999 * 109.46961 * 240.00101 * 3 2 1 5 5 O 1.42905 * 109.46996 * 359.97438 * 3 2 1 6 6 C 1.52997 * 109.47466 * 119.99751 * 3 2 1 7 7 C 1.50701 * 109.47212 * 179.97438 * 6 3 2 8 8 O 1.21280 * 119.99781 * 0.02562 * 7 6 3 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 6 3 10 10 C 1.46497 * 119.99566 * 180.02562 * 9 7 6 11 11 H 1.09004 * 109.47650 * 35.00435 * 10 9 7 12 12 C 1.53002 * 109.46983 * 155.00136 * 10 9 7 13 13 N 1.46498 * 109.47384 * 305.00310 * 12 10 9 14 14 C 1.36936 * 120.00096 * 179.97438 * 13 12 10 15 15 H 1.07997 * 120.00177 * 359.97438 * 14 13 12 16 16 C 1.38810 * 119.99697 * 179.97438 * 14 13 12 17 17 N 1.31618 * 120.00209 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99859 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46836 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47149 * 119.99725 * 18 16 14 21 21 H 1.48499 * 109.46813 * 240.00093 * 18 16 14 22 22 C 1.52999 * 109.47357 * 275.00168 * 10 9 7 23 23 C 1.52998 * 117.49897 * 128.74986 * 22 10 9 24 24 C 1.53002 * 117.49620 * 60.09026 * 22 10 9 25 25 H 1.07992 * 120.00236 * 0.02562 * 1 2 3 26 26 H 1.08002 * 119.99626 * 179.97438 * 1 2 3 27 27 H 1.08002 * 120.00334 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.46716 * 299.99650 * 4 3 2 29 29 H 1.09000 * 109.47486 * 59.99568 * 4 3 2 30 30 H 1.09001 * 109.47362 * 180.02562 * 4 3 2 31 31 H 0.96696 * 114.00036 * 60.00342 * 5 3 2 32 32 H 1.09002 * 109.47153 * 59.99773 * 6 3 2 33 33 H 1.09001 * 109.46832 * 299.99964 * 6 3 2 34 34 H 0.96995 * 120.00011 * 0.02562 * 9 7 6 35 35 H 1.08999 * 109.46598 * 65.00192 * 12 10 9 36 36 H 1.09001 * 109.47457 * 184.99624 * 12 10 9 37 37 H 0.97003 * 119.99635 * 359.97438 * 13 12 10 38 38 H 0.97008 * 119.99764 * 180.02562 * 17 16 14 39 39 H 1.08997 * 115.55089 * 274.42113 * 22 10 9 40 40 H 1.09000 * 117.49965 * 0.02562 * 23 22 10 41 41 H 1.09002 * 117.50071 * 145.02069 * 23 22 10 42 42 H 1.09007 * 117.49723 * 214.97712 * 24 22 10 43 43 H 1.08998 * 117.49964 * 359.97438 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3861 -1.2493 5 8 1.1348 2.3912 -0.0006 6 6 2.9431 1.3863 1.2492 7 6 3.6970 2.6912 1.2488 8 8 3.5453 3.4788 0.3392 9 7 4.5390 2.9832 2.2599 10 6 5.2714 4.2519 2.2598 11 1 4.6466 5.0322 1.8251 12 6 5.6348 4.6311 3.6968 13 7 4.4211 4.6573 4.5169 14 6 4.5001 4.9733 5.8469 15 1 5.4572 5.2028 6.2915 16 6 3.3500 4.9986 6.6237 17 7 2.1835 4.7195 6.0818 18 14 3.4576 5.4304 8.4380 19 1 4.8723 5.7015 8.7992 20 1 2.6369 6.6379 8.7090 21 1 2.9494 4.2943 9.2481 22 6 6.5500 4.1027 1.4328 23 6 6.8143 5.1467 0.3460 24 6 6.3973 3.7259 -0.0422 25 1 -0.5400 0.9352 -0.0004 26 1 -0.5399 -0.9354 -0.0004 27 1 1.8501 -0.9353 0.0004 28 1 3.6514 0.5577 -1.2492 29 1 2.3164 1.3283 -2.1393 30 1 3.4884 2.3299 -1.2491 31 1 0.5432 2.4033 0.7642 32 1 3.6514 0.5578 1.2493 33 1 2.3163 1.3286 2.1392 34 1 4.6600 2.3534 2.9876 35 1 6.3309 3.8964 4.1014 36 1 6.1008 5.6165 3.7059 37 1 3.5616 4.4509 4.1176 38 1 1.3798 4.7375 6.6246 39 1 7.4119 3.7037 1.9676 40 1 6.0775 5.9401 0.2205 41 1 7.8501 5.4342 0.1656 42 1 7.1590 3.0793 -0.4779 43 1 5.3860 3.5839 -0.4233 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754439548.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:21 Heat of formation + Delta-G solvation = -29.111871 kcal Electronic energy + Delta-G solvation = -23065.743950 eV Core-core repulsion = 19726.814355 eV Total energy + Delta-G solvation = -3338.929595 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.09258 -38.33328 -36.75727 -34.97881 -33.34241 -32.94583 -31.41171 -30.91606 -28.60943 -27.17547 -24.04757 -22.85602 -22.11642 -21.48124 -20.42473 -19.89591 -19.62046 -17.41036 -16.99964 -16.44255 -15.82770 -15.65651 -15.10046 -14.90155 -14.65198 -14.28679 -13.90147 -13.32131 -13.11606 -12.98640 -12.80628 -12.27495 -12.25119 -11.99409 -11.77690 -11.59045 -11.43080 -11.13816 -11.02340 -10.98513 -10.89393 -10.83403 -10.16436 -10.12351 -10.05529 -9.91788 -9.69274 -9.52331 -9.17291 -8.92643 -8.51615 -6.97816 -5.80674 -3.10088 2.11053 3.01894 3.40245 3.45656 3.47319 3.48587 4.15506 4.34738 4.54184 4.71316 4.78703 4.91355 5.01783 5.16241 5.20601 5.25043 5.35289 5.48935 5.52297 5.57879 5.70031 5.72466 5.81727 5.87309 5.90595 5.94339 6.08463 6.10700 6.24328 6.34210 6.39852 6.44403 6.53143 6.57497 6.64628 6.73532 7.02654 7.66630 7.79477 7.96501 8.37434 8.67910 9.49470 10.05460 10.41167 11.41795 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.013619 B = 0.005153 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.416295 B = 5432.802085 C = 7146.822346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.186 4.186 3 C 0.179 3.821 4 C -0.146 4.146 5 O -0.538 6.538 6 C -0.168 4.168 7 C 0.518 3.482 8 O -0.525 6.525 9 N -0.710 5.710 10 C 0.169 3.831 11 H 0.087 0.913 12 C 0.148 3.852 13 N -0.731 5.731 14 C -0.241 4.241 15 H 0.071 0.929 16 C -0.012 4.012 17 N -0.931 5.931 18 Si 0.907 3.093 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.292 1.292 22 C -0.162 4.162 23 C -0.172 4.172 24 C -0.185 4.185 25 H 0.106 0.894 26 H 0.098 0.902 27 H 0.114 0.886 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.096 0.904 31 H 0.371 0.629 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.402 0.598 35 H 0.024 0.976 36 H 0.034 0.966 37 H 0.386 0.614 38 H 0.254 0.746 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.355 -9.809 -12.801 16.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.205 4.205 3 C 0.137 3.863 4 C -0.202 4.202 5 O -0.344 6.344 6 C -0.208 4.208 7 C 0.305 3.695 8 O -0.402 6.402 9 N -0.361 5.361 10 C 0.065 3.935 11 H 0.105 0.895 12 C 0.020 3.980 13 N -0.376 5.376 14 C -0.372 4.372 15 H 0.089 0.911 16 C -0.208 4.208 17 N -0.580 5.580 18 Si 0.738 3.262 19 H -0.206 1.206 20 H -0.218 1.218 21 H -0.219 1.219 22 C -0.182 4.182 23 C -0.210 4.210 24 C -0.222 4.222 25 H 0.124 0.876 26 H 0.116 0.884 27 H 0.131 0.869 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.114 0.886 31 H 0.219 0.781 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.236 0.764 35 H 0.041 0.959 36 H 0.052 0.948 37 H 0.220 0.780 38 H 0.064 0.936 39 H 0.119 0.881 40 H 0.112 0.888 41 H 0.107 0.893 42 H 0.100 0.900 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.623 -9.042 -13.837 16.922 hybrid contribution -0.446 -0.462 2.006 2.106 sum 3.178 -9.504 -11.831 15.504 Atomic orbital electron populations 1.23865 0.96093 1.02343 0.99605 1.23635 0.96769 0.98875 1.01207 1.19796 0.88043 0.83952 0.94466 1.21933 0.98802 1.04230 0.95278 1.86693 1.50073 1.48817 1.48771 1.22392 1.00527 0.97117 1.00792 1.20254 0.79072 0.88115 0.82089 1.90580 1.64262 1.49877 1.35522 1.45988 1.44166 1.21130 1.24790 1.20751 0.90382 0.86049 0.96351 0.89506 1.20914 0.91096 0.98392 0.87618 1.42350 1.04154 1.84057 1.07044 1.19268 0.93512 1.39108 0.85351 0.91096 1.24740 0.95353 1.02504 0.98228 1.69678 0.97564 1.55593 1.35131 0.86122 0.77226 0.77632 0.85224 1.20551 1.21845 1.21892 1.22652 0.99622 1.04923 0.91001 1.22890 1.01693 0.93022 1.03355 1.23274 1.04116 0.97667 0.97144 0.87628 0.88406 0.86855 0.92186 0.92521 0.88596 0.78138 0.88467 0.88421 0.76382 0.95859 0.94831 0.78001 0.93563 0.88071 0.88760 0.89333 0.90046 0.86374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.77 13.93 29.01 0.40 -1.37 16 2 C -0.19 -1.90 8.77 -36.03 -0.32 -2.22 16 3 C 0.18 2.19 0.94 -91.78 -0.09 2.10 16 4 C -0.15 -1.79 8.50 37.16 0.32 -1.48 16 5 O -0.54 -7.73 10.85 -53.48 -0.58 -8.31 16 6 C -0.17 -2.03 4.93 -27.88 -0.14 -2.17 16 7 C 0.52 7.95 6.72 -10.98 -0.07 7.87 16 8 O -0.53 -9.38 9.99 -12.69 -0.13 -9.51 16 9 N -0.71 -11.02 4.50 -53.80 -0.24 -11.26 16 10 C 0.17 2.85 2.43 -67.93 -0.17 2.68 16 11 H 0.09 1.69 7.34 -51.93 -0.38 1.31 16 12 C 0.15 2.88 5.80 -4.04 -0.02 2.86 16 13 N -0.73 -17.94 5.43 -59.91 -0.33 -18.26 16 14 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 15 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 16 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 17 N -0.93 -27.65 13.06 55.49 0.72 -26.93 16 18 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 C -0.16 -2.31 5.36 -90.62 -0.49 -2.79 16 23 C -0.17 -2.30 10.18 -26.69 -0.27 -2.57 16 24 C -0.19 -2.52 9.74 -26.69 -0.26 -2.78 16 25 H 0.11 1.05 6.41 -52.49 -0.34 0.71 16 26 H 0.10 0.80 8.06 -52.49 -0.42 0.37 16 27 H 0.11 0.97 8.06 -52.49 -0.42 0.55 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.10 1.41 5.51 -51.93 -0.29 1.13 16 31 H 0.37 4.45 8.05 45.56 0.37 4.81 16 32 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.40 5.96 8.60 -40.82 -0.35 5.61 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.39 10.09 7.33 -40.82 -0.30 9.79 16 38 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.10 1.35 8.11 -51.93 -0.42 0.92 16 40 H 0.09 1.34 8.05 -51.93 -0.42 0.92 16 41 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.12 1.84 5.02 -51.93 -0.26 1.58 16 LS Contribution 349.31 15.07 5.26 5.26 Total: -1.00 -31.58 349.31 -7.82 -39.40 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: -6.16 Total: 19.61 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -1.35 Total: -7.05 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: 0.16 Total: -56.45 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.71 Total: -17.82 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.58 -7.82 -39.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754439548.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.283 kcal (2) G-P(sol) polarization free energy of solvation -31.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds