Wall clock time and date at job start Tue Mar 31 2020 05:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 119.99880 * 2 1 4 4 C 1.53005 * 109.47249 * 120.00065 * 3 2 1 5 5 O 1.42901 * 109.47361 * 359.97438 * 3 2 1 6 6 C 1.53002 * 109.47138 * 239.99946 * 3 2 1 7 7 C 1.50703 * 109.47089 * 60.10357 * 6 3 2 8 8 O 1.21279 * 119.99679 * 354.33918 * 7 6 3 9 9 N 1.34779 * 119.99703 * 174.06613 * 7 6 3 10 10 C 1.46498 * 119.99896 * 180.27682 * 9 7 6 11 11 H 1.09004 * 109.46862 * 325.00409 * 10 9 7 12 12 C 1.52995 * 109.47359 * 204.99727 * 10 9 7 13 13 N 1.46507 * 109.46669 * 55.00090 * 12 10 9 14 14 C 1.36938 * 119.99300 * 180.02562 * 13 12 10 15 15 H 1.07995 * 120.00627 * 0.02562 * 14 13 12 16 16 C 1.38816 * 119.99635 * 179.97438 * 14 13 12 17 17 N 1.31624 * 119.99869 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00209 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47083 * 59.99839 * 18 16 14 20 20 H 1.48506 * 109.47072 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47040 * 299.99919 * 18 16 14 22 22 C 1.53004 * 109.47351 * 84.99667 * 10 9 7 23 23 C 1.53001 * 117.49568 * 8.74760 * 22 10 9 24 24 C 1.53002 * 117.49823 * 300.09351 * 22 10 9 25 25 H 1.07997 * 120.00124 * 0.02562 * 1 2 3 26 26 H 1.08006 * 119.99719 * 180.02562 * 1 2 3 27 27 H 1.08001 * 120.00607 * 179.97438 * 2 1 3 28 28 H 1.09004 * 109.46761 * 184.93859 * 4 3 2 29 29 H 1.08997 * 109.46907 * 304.93404 * 4 3 2 30 30 H 1.08991 * 109.47254 * 64.93566 * 4 3 2 31 31 H 0.96700 * 113.99694 * 300.00256 * 5 3 2 32 32 H 1.08995 * 109.47246 * 300.10404 * 6 3 2 33 33 H 1.09004 * 109.47328 * 180.10474 * 6 3 2 34 34 H 0.96999 * 120.00084 * 0.27350 * 9 7 6 35 35 H 1.09001 * 109.47210 * 174.99477 * 12 10 9 36 36 H 1.08994 * 109.47272 * 295.00063 * 12 10 9 37 37 H 0.96998 * 120.00342 * 359.97438 * 13 12 10 38 38 H 0.96999 * 120.00222 * 179.97438 * 17 16 14 39 39 H 1.08993 * 115.54983 * 154.42031 * 22 10 9 40 40 H 1.08997 * 117.49891 * 0.02562 * 23 22 10 41 41 H 1.09004 * 117.49704 * 145.01698 * 23 22 10 42 42 H 1.08999 * 117.49705 * 214.97666 * 24 22 10 43 43 H 1.09000 * 117.49801 * 359.97438 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.9431 1.3862 1.2493 5 8 1.1349 2.3913 -0.0006 6 6 2.9431 1.3862 -1.2492 7 6 2.0764 1.3089 -2.4797 8 8 0.8872 1.0969 -2.3715 9 7 2.6221 1.4808 -3.7001 10 6 1.7786 1.4117 -4.8959 11 1 0.9960 0.6679 -4.7459 12 6 2.6339 1.0163 -6.1012 13 7 3.3388 -0.2347 -5.8104 14 6 4.1701 -0.7861 -6.7485 15 1 4.3064 -0.2987 -7.7025 16 6 4.8383 -1.9712 -6.4729 17 7 4.6733 -2.5645 -5.3096 18 14 5.9729 -2.7231 -7.7522 19 1 7.0604 -1.7645 -8.0739 20 1 6.5604 -3.9775 -7.2167 21 1 5.1994 -3.0255 -8.9832 22 6 1.1407 2.7790 -5.1498 23 6 1.6290 3.9549 -4.3014 24 6 0.2431 3.3545 -4.0525 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9354 0.0004 27 1 1.8501 -0.9353 0.0004 28 1 3.4205 2.3651 1.2945 29 1 2.3277 1.2407 2.1370 30 1 3.7077 0.6107 1.2062 31 1 0.5438 2.4030 -0.7659 32 1 3.6502 0.5567 -1.2502 33 1 3.4895 2.3294 -1.2483 34 1 3.5732 1.6503 -3.7866 35 1 1.9930 0.8782 -6.9720 36 1 3.3598 1.8033 -6.3055 37 1 3.2172 -0.6720 -4.9531 38 1 5.1400 -3.3928 -5.1170 39 1 0.8658 2.9847 -6.1843 40 1 2.4049 3.7544 -3.5626 41 1 1.6751 4.9343 -4.7776 42 1 -0.6221 3.9392 -4.3651 43 1 0.1067 2.7589 -3.1499 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754439550.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:25 Heat of formation + Delta-G solvation = -28.874853 kcal Electronic energy + Delta-G solvation = -23384.532189 eV Core-core repulsion = 20045.612872 eV Total energy + Delta-G solvation = -3338.919317 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.38921 -38.39898 -36.61474 -34.91921 -33.34756 -32.83390 -31.50770 -30.82579 -28.78085 -27.36800 -24.09226 -22.53256 -22.26058 -21.50571 -20.77117 -19.65308 -19.45939 -17.39854 -17.02293 -16.55339 -16.10417 -15.98281 -15.14191 -14.78225 -14.51527 -14.17876 -13.59871 -13.42866 -13.24629 -12.95030 -12.63716 -12.47797 -12.26655 -12.07565 -11.85576 -11.66007 -11.61163 -11.34036 -11.20027 -10.92575 -10.89818 -10.83540 -10.27753 -10.15488 -10.01123 -9.83877 -9.70283 -9.58632 -8.97444 -8.93968 -8.60450 -7.00515 -5.82453 -3.12188 2.55498 2.85388 3.39707 3.43319 3.45070 3.45747 4.04892 4.30181 4.52438 4.78752 4.80127 4.89078 4.93194 5.16929 5.18950 5.38500 5.45865 5.48920 5.50247 5.57867 5.60688 5.75261 5.78447 5.83075 5.84485 5.99521 6.00925 6.07978 6.17842 6.20838 6.30184 6.46025 6.47418 6.66907 6.81133 6.91130 7.00455 7.63709 7.76118 7.82802 8.35503 8.49274 9.47407 10.02851 10.38428 11.39817 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016335 B = 0.005005 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.716152 B = 5593.008113 C = 6715.974522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.185 4.185 3 C 0.180 3.820 4 C -0.134 4.134 5 O -0.563 6.563 6 C -0.170 4.170 7 C 0.518 3.482 8 O -0.542 6.542 9 N -0.706 5.706 10 C 0.169 3.831 11 H 0.091 0.909 12 C 0.147 3.853 13 N -0.731 5.731 14 C -0.243 4.243 15 H 0.070 0.930 16 C -0.011 4.011 17 N -0.932 5.932 18 Si 0.908 3.092 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.160 4.160 23 C -0.177 4.177 24 C -0.185 4.185 25 H 0.099 0.901 26 H 0.091 0.909 27 H 0.109 0.891 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.384 0.616 32 H 0.107 0.893 33 H 0.097 0.903 34 H 0.405 0.595 35 H 0.033 0.967 36 H 0.026 0.974 37 H 0.386 0.614 38 H 0.256 0.744 39 H 0.108 0.892 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.150 11.054 9.536 15.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.203 4.203 3 C 0.139 3.861 4 C -0.191 4.191 5 O -0.373 6.373 6 C -0.211 4.211 7 C 0.305 3.695 8 O -0.421 6.421 9 N -0.356 5.356 10 C 0.064 3.936 11 H 0.109 0.891 12 C 0.019 3.981 13 N -0.376 5.376 14 C -0.374 4.374 15 H 0.088 0.912 16 C -0.207 4.207 17 N -0.580 5.580 18 Si 0.739 3.261 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.212 1.212 22 C -0.180 4.180 23 C -0.214 4.214 24 C -0.222 4.222 25 H 0.117 0.883 26 H 0.109 0.891 27 H 0.127 0.873 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.236 0.764 32 H 0.125 0.875 33 H 0.115 0.885 34 H 0.240 0.760 35 H 0.051 0.949 36 H 0.043 0.957 37 H 0.220 0.780 38 H 0.066 0.934 39 H 0.126 0.874 40 H 0.110 0.890 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.594 10.996 9.990 15.875 hybrid contribution 0.894 -0.793 -1.290 1.759 sum -4.700 10.203 8.700 14.208 Atomic orbital electron populations 1.23550 0.95934 1.01392 0.98069 1.23234 0.96818 0.97836 1.02452 1.19770 0.87997 0.85219 0.93150 1.21705 0.98774 1.02544 0.96121 1.86411 1.51027 1.48928 1.50959 1.22454 0.99941 1.05267 0.93396 1.20491 0.88705 0.75539 0.84747 1.90572 1.15864 1.49153 1.86546 1.46025 1.12539 1.71532 1.05521 1.20728 0.93328 0.94664 0.84906 0.89145 1.20911 0.93711 0.89917 0.93532 1.42329 1.53171 1.23619 1.18462 1.19171 1.18279 1.03997 0.95991 0.91200 1.24743 1.00839 0.97998 0.97164 1.69654 1.46627 1.19785 1.21943 0.86259 0.80636 0.78475 0.80735 1.21254 1.21689 1.21246 1.22698 1.04094 0.94400 0.96828 1.22877 0.98245 0.96745 1.03532 1.23309 0.93178 1.03778 1.01939 0.88321 0.89060 0.87289 0.91753 0.91694 0.90928 0.76393 0.87513 0.88476 0.76041 0.94932 0.95666 0.78037 0.93440 0.87420 0.89042 0.89603 0.89820 0.86662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 12.60 29.02 0.37 -1.68 16 2 C -0.19 -2.47 7.47 -36.03 -0.27 -2.74 16 3 C 0.18 2.21 1.08 -91.77 -0.10 2.11 16 4 C -0.13 -1.37 8.83 37.16 0.33 -1.04 16 5 O -0.56 -7.58 11.92 -51.76 -0.62 -8.19 16 6 C -0.17 -2.05 4.97 -27.88 -0.14 -2.19 16 7 C 0.52 7.50 6.15 -10.98 -0.07 7.43 16 8 O -0.54 -8.68 8.99 -10.97 -0.10 -8.78 16 9 N -0.71 -10.46 3.05 -53.81 -0.16 -10.62 16 10 C 0.17 2.72 2.59 -67.93 -0.18 2.54 16 11 H 0.09 1.68 7.58 -51.93 -0.39 1.29 16 12 C 0.15 2.80 5.80 -4.04 -0.02 2.78 16 13 N -0.73 -17.66 5.43 -59.91 -0.33 -17.99 16 14 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 15 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 16 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 17 N -0.93 -27.51 13.06 55.49 0.72 -26.78 16 18 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 22 C -0.16 -2.20 5.71 -90.62 -0.52 -2.72 16 23 C -0.18 -2.19 9.74 -26.70 -0.26 -2.45 16 24 C -0.19 -2.42 9.82 -26.70 -0.26 -2.68 16 25 H 0.10 1.31 6.41 -52.49 -0.34 0.98 16 26 H 0.09 1.15 8.06 -52.48 -0.42 0.72 16 27 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.38 5.20 5.78 45.56 0.26 5.46 16 32 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.40 5.85 8.60 -40.82 -0.35 5.50 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.39 9.92 7.33 -40.82 -0.30 9.62 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.11 1.39 8.11 -51.93 -0.42 0.97 16 40 H 0.09 1.14 6.67 -51.93 -0.35 0.80 16 41 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.12 1.66 5.01 -51.93 -0.26 1.40 16 LS Contribution 344.62 15.07 5.19 5.19 Total: -1.00 -29.89 344.62 -8.02 -37.91 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: -6.34 Total: 20.10 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -1.37 Total: -7.79 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: 0.23 Total: -55.39 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -0.72 Total: -16.97 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.89 -8.02 -37.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754439550.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.037 kcal (2) G-P(sol) polarization free energy of solvation -29.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds