Wall clock time and date at job start Tue Mar 31 2020 05:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42895 * 109.47557 * 2 1 4 4 C 1.52997 * 109.47499 * 120.00428 * 2 1 3 5 5 C 1.50699 * 109.47686 * 176.61364 * 4 2 1 6 6 O 1.21282 * 119.99670 * 6.72180 * 5 4 2 7 7 N 1.34778 * 120.00132 * 186.44607 * 5 4 2 8 8 C 1.46497 * 119.99924 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47298 * 184.11390 * 8 7 5 10 10 N 1.46493 * 115.55118 * 269.97138 * 9 8 7 11 11 C 1.36937 * 120.00120 * 305.01441 * 10 9 8 12 12 H 1.08000 * 119.99955 * 354.31756 * 11 10 9 13 13 C 1.38814 * 120.00394 * 174.31488 * 11 10 9 14 14 N 1.31610 * 120.00139 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99678 * 359.97438 * 13 11 10 16 16 H 1.48508 * 109.46745 * 90.00445 * 15 13 11 17 17 H 1.48494 * 109.47076 * 209.99993 * 15 13 11 18 18 H 1.48495 * 109.47143 * 330.00272 * 15 13 11 19 19 C 1.52998 * 117.49513 * 124.29685 * 9 8 7 20 20 C 1.53004 * 117.49226 * 55.63967 * 9 8 7 21 21 C 1.53005 * 109.46777 * 239.99935 * 2 1 3 22 22 C 1.53008 * 117.49520 * 128.74626 * 21 2 1 23 23 C 1.53000 * 117.49575 * 60.08980 * 21 2 1 24 24 H 1.09003 * 109.46605 * 294.62572 * 1 2 3 25 25 H 1.09000 * 109.47417 * 54.61503 * 1 2 3 26 26 H 1.09000 * 109.47654 * 174.62408 * 1 2 3 27 27 H 0.96703 * 114.00069 * 179.97438 * 3 2 1 28 28 H 1.09007 * 109.46978 * 56.61326 * 4 2 1 29 29 H 1.09001 * 109.47074 * 296.61906 * 4 2 1 30 30 H 0.96999 * 120.00045 * 0.02562 * 7 5 4 31 31 H 1.09004 * 109.47460 * 304.11944 * 8 7 5 32 32 H 1.09007 * 109.46828 * 64.11351 * 8 7 5 33 33 H 0.96996 * 119.99958 * 125.01857 * 10 9 8 34 34 H 0.97005 * 120.00240 * 180.02562 * 14 13 11 35 35 H 1.08995 * 117.50506 * 0.02562 * 19 9 8 36 36 H 1.09006 * 117.49852 * 145.02836 * 19 9 8 37 37 H 1.09006 * 117.49267 * 214.97389 * 20 9 8 38 38 H 1.08998 * 117.50344 * 359.97438 * 20 9 8 39 39 H 1.08991 * 115.55254 * 274.41783 * 21 2 1 40 40 H 1.08992 * 117.49707 * 0.02562 * 22 21 2 41 41 H 1.09003 * 117.49394 * 145.02149 * 22 21 2 42 42 H 1.08998 * 117.49901 * 214.97814 * 23 21 2 43 43 H 1.09001 * 117.50268 * 0.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5447 -0.7944 1.2079 6 8 4.1564 -0.2126 0.3372 7 7 4.2108 -1.5018 2.1419 8 6 5.6735 -1.5733 2.1015 9 6 6.1688 -2.5139 3.2019 10 7 6.4470 -1.8830 4.4945 11 6 7.3120 -0.8239 4.5674 12 1 7.8590 -0.5120 3.6900 13 6 7.4858 -0.1511 5.7691 14 7 8.3167 0.8670 5.8391 15 14 6.5390 -0.6901 7.2866 16 1 7.3286 -1.7066 8.0274 17 1 6.2981 0.4844 8.1627 18 1 5.2381 -1.2766 6.8760 19 6 7.0579 -3.6860 2.7819 20 6 5.6120 -3.9389 3.2165 21 6 2.0399 -0.7213 -1.2493 22 6 3.0762 0.0040 -2.1102 23 6 1.6372 -0.1483 -2.6096 24 1 -0.3632 0.4282 0.9342 25 1 -0.3634 0.5951 -0.8378 26 1 -0.3634 -1.0231 -0.0963 27 1 2.9704 1.4235 0.0004 28 1 1.6280 -1.7300 1.2799 29 1 1.7270 -0.1737 2.1381 30 1 3.7218 -1.9641 2.8405 31 1 5.9922 -1.9511 1.1299 32 1 6.0904 -0.5785 2.2590 33 1 6.0185 -2.2155 5.2986 34 1 8.4385 1.3370 6.6789 35 1 7.2903 -3.7870 1.7219 36 1 7.8495 -3.9882 3.4676 37 1 5.4532 -4.4072 4.1879 38 1 4.8926 -4.2062 2.4425 39 1 2.1251 -1.8046 -1.1648 40 1 3.3949 0.9946 -1.7863 41 1 3.8430 -0.6024 -2.5923 42 1 1.4580 -0.8546 -3.4202 43 1 1.0094 0.7428 -2.6146 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754512705.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:20 Heat of formation + Delta-G solvation = -24.679933 kcal Electronic energy + Delta-G solvation = -22948.201973 eV Core-core repulsion = 19609.464562 eV Total energy + Delta-G solvation = -3338.737412 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.30408 -38.52211 -37.40647 -34.92874 -33.84539 -33.08139 -32.16316 -30.42191 -28.74557 -26.11431 -23.65816 -23.33250 -22.21286 -22.05437 -20.39181 -19.81704 -19.13292 -17.73596 -17.10713 -16.77317 -16.15464 -15.78533 -15.10943 -14.96097 -14.40238 -14.19858 -14.08513 -13.63689 -12.87199 -12.79295 -12.72383 -12.68285 -12.45444 -12.34292 -12.14151 -11.78681 -11.28547 -11.26431 -11.14926 -11.06885 -11.05340 -10.50679 -10.40853 -10.32108 -10.16276 -9.82787 -9.68216 -9.67665 -9.42409 -8.87719 -8.68126 -7.39143 -5.86647 -3.25085 2.83295 3.28636 3.30797 3.36684 3.38561 3.84592 4.24931 4.31814 4.48852 4.59651 4.69975 4.82073 4.92778 5.05407 5.09457 5.12733 5.25231 5.33856 5.34371 5.46610 5.49896 5.52789 5.66963 5.67986 5.72113 5.82893 5.90569 6.04813 6.08084 6.15378 6.18601 6.26353 6.30997 6.32902 6.58196 6.63605 6.74676 7.75140 7.82529 7.89488 8.31845 8.46280 9.08171 9.79689 9.97393 11.30804 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020867 B = 0.004199 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.483727 B = 6666.535342 C = 7083.542942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.180 3.820 3 O -0.564 6.564 4 C -0.170 4.170 5 C 0.511 3.489 6 O -0.541 6.541 7 N -0.714 5.714 8 C 0.148 3.852 9 C 0.139 3.861 10 N -0.712 5.712 11 C -0.248 4.248 12 H 0.093 0.907 13 C 0.011 3.989 14 N -0.926 5.926 15 Si 0.882 3.118 16 H -0.284 1.284 17 H -0.290 1.290 18 H -0.277 1.277 19 C -0.191 4.191 20 C -0.192 4.192 21 C -0.175 4.175 22 C -0.140 4.140 23 C -0.184 4.184 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.389 0.611 28 H 0.096 0.904 29 H 0.102 0.898 30 H 0.398 0.602 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.365 0.635 34 H 0.261 0.739 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.321 -7.536 -11.631 20.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.138 3.862 3 O -0.376 6.376 4 C -0.210 4.210 5 C 0.297 3.703 6 O -0.420 6.420 7 N -0.364 5.364 8 C 0.023 3.977 9 C 0.045 3.955 10 N -0.353 5.353 11 C -0.378 4.378 12 H 0.111 0.889 13 C -0.185 4.185 14 N -0.573 5.573 15 Si 0.712 3.288 16 H -0.210 1.210 17 H -0.216 1.216 18 H -0.203 1.203 19 C -0.232 4.232 20 C -0.230 4.230 21 C -0.193 4.193 22 C -0.177 4.177 23 C -0.221 4.221 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.243 0.757 28 H 0.115 0.885 29 H 0.120 0.880 30 H 0.232 0.768 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.199 0.801 34 H 0.071 0.929 35 H 0.104 0.896 36 H 0.114 0.886 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.307 -6.743 -12.253 20.734 hybrid contribution -0.089 -0.909 1.737 1.963 sum -15.396 -7.652 -10.515 20.154 Atomic orbital electron populations 1.21720 0.92417 1.02213 1.02890 1.20253 0.93655 0.82073 0.90186 1.86394 1.29406 1.25169 1.96658 1.22477 0.93399 1.03559 1.01609 1.20507 0.89615 0.78710 0.81428 1.90599 1.69838 1.45353 1.36250 1.46012 1.08237 1.52113 1.30011 1.21201 0.78417 1.01532 0.96523 1.20070 1.00916 0.85631 0.88878 1.42152 1.53370 1.38084 1.01645 1.18974 1.15904 1.05068 0.97821 0.88877 1.24680 0.99152 0.97168 0.97528 1.69691 1.39141 1.22407 1.26042 0.86598 0.79993 0.77930 0.84268 1.21038 1.21592 1.20275 1.23474 0.93208 1.05534 1.00958 1.23116 0.97768 0.99679 1.02453 1.22836 1.05652 0.98931 0.91930 1.22711 0.91151 1.02296 1.01530 1.22985 0.99668 1.02966 0.96450 0.91951 0.91545 0.91266 0.75668 0.88543 0.87986 0.76830 0.91884 0.89558 0.80148 0.92855 0.89613 0.88628 0.89211 0.89175 0.88333 0.88239 0.89526 0.89552 0.88876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 8.61 37.15 0.32 -0.93 16 2 C 0.18 2.05 0.92 -90.62 -0.08 1.96 16 3 O -0.56 -7.89 12.12 -53.10 -0.64 -8.53 16 4 C -0.17 -1.84 4.98 -27.89 -0.14 -1.98 16 5 C 0.51 7.22 7.31 -10.99 -0.08 7.14 16 6 O -0.54 -8.95 11.39 -12.31 -0.14 -9.09 16 7 N -0.71 -10.26 5.41 -60.29 -0.33 -10.59 16 8 C 0.15 2.56 5.78 -4.04 -0.02 2.54 16 9 C 0.14 2.47 2.37 -131.82 -0.31 2.15 16 10 N -0.71 -15.76 5.33 -47.24 -0.25 -16.01 16 11 C -0.25 -6.69 9.68 -15.06 -0.15 -6.84 16 12 H 0.09 2.73 7.83 -52.49 -0.41 2.32 16 13 C 0.01 0.32 5.50 -17.43 -0.10 0.23 16 14 N -0.93 -28.45 13.97 55.49 0.78 -27.67 16 15 Si 0.88 21.26 27.68 -169.99 -4.71 16.56 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 18 H -0.28 -6.21 6.61 56.52 0.37 -5.83 16 19 C -0.19 -3.05 10.11 -26.69 -0.27 -3.32 16 20 C -0.19 -2.71 9.72 -26.69 -0.26 -2.97 16 21 C -0.17 -1.98 4.00 -90.61 -0.36 -2.34 16 22 C -0.14 -1.72 8.01 -26.69 -0.21 -1.93 16 23 C -0.18 -1.92 9.74 -26.69 -0.26 -2.18 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.63 7.49 -51.93 -0.39 0.24 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.39 5.75 5.27 45.56 0.24 5.99 16 28 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.40 5.00 8.21 -40.82 -0.34 4.66 16 31 H 0.06 1.05 7.88 -51.93 -0.41 0.64 16 32 H 0.09 1.83 7.19 -51.92 -0.37 1.46 16 33 H 0.36 7.92 5.95 -40.82 -0.24 7.68 16 34 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 35 H 0.09 1.23 8.03 -51.93 -0.42 0.82 16 36 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 37 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.10 1.07 8.11 -51.93 -0.42 0.65 16 40 H 0.10 1.33 6.28 -51.93 -0.33 1.01 16 41 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.09 0.98 7.67 -51.93 -0.40 0.59 16 LS Contribution 344.94 15.07 5.20 5.20 Total: -1.00 -30.83 344.94 -8.47 -39.30 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: -6.45 Total: 19.29 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -1.93 Total: -8.45 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: 0.20 Total: -54.27 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.78 Total: -17.62 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.71 Total: 16.56 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.83 -8.47 -39.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754512705.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.618 kcal (2) G-P(sol) polarization free energy of solvation -30.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds