Wall clock time and date at job start Tue Mar 31 2020 05:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42897 * 109.47456 * 2 1 4 4 C 1.53008 * 109.46919 * 240.00190 * 2 1 3 5 5 C 1.50698 * 109.47271 * 60.00297 * 4 2 1 6 6 O 1.21283 * 119.99532 * 359.97438 * 5 4 2 7 7 N 1.34774 * 119.99841 * 179.72856 * 5 4 2 8 8 C 1.46497 * 119.99792 * 180.02562 * 7 5 4 9 9 C 1.53003 * 109.47198 * 176.93544 * 8 7 5 10 10 N 1.46501 * 115.54452 * 279.54059 * 9 8 7 11 11 C 1.36933 * 120.00466 * 295.38904 * 10 9 8 12 12 H 1.07997 * 119.99933 * 357.19481 * 11 10 9 13 13 C 1.38818 * 120.00007 * 177.20063 * 11 10 9 14 14 N 1.31617 * 120.00129 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99879 * 179.97438 * 13 11 10 16 16 H 1.48492 * 109.46961 * 89.99699 * 15 13 11 17 17 H 1.48501 * 109.47055 * 209.99971 * 15 13 11 18 18 H 1.48503 * 109.47012 * 330.00016 * 15 13 11 19 19 C 1.52999 * 117.49967 * 133.87573 * 9 8 7 20 20 C 1.52992 * 117.50019 * 65.21225 * 9 8 7 21 21 C 1.52995 * 109.46732 * 120.00499 * 2 1 3 22 22 C 1.52996 * 117.50221 * 13.74458 * 21 2 1 23 23 C 1.53001 * 117.50219 * 305.07898 * 21 2 1 24 24 H 1.08989 * 109.47744 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47072 * 300.00097 * 1 2 3 26 26 H 1.09009 * 109.46830 * 59.99616 * 1 2 3 27 27 H 0.96701 * 113.99769 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47023 * 300.00339 * 4 2 1 29 29 H 1.09000 * 109.46672 * 180.02562 * 4 2 1 30 30 H 0.97000 * 120.00132 * 359.97438 * 7 5 4 31 31 H 1.09004 * 109.47109 * 296.93121 * 8 7 5 32 32 H 1.09002 * 109.47699 * 56.93256 * 8 7 5 33 33 H 0.97003 * 119.99883 * 115.38975 * 10 9 8 34 34 H 0.96996 * 119.99810 * 180.02562 * 14 13 11 35 35 H 1.08999 * 117.49900 * 359.97438 * 19 9 8 36 36 H 1.08998 * 117.49537 * 145.02185 * 19 9 8 37 37 H 1.09003 * 117.49987 * 214.98503 * 20 9 8 38 38 H 1.08997 * 117.49716 * 359.97438 * 20 9 8 39 39 H 1.09007 * 115.54985 * 159.41222 * 21 2 1 40 40 H 1.08996 * 117.49930 * 359.97438 * 22 21 2 41 41 H 1.09000 * 117.50352 * 145.02743 * 22 21 2 42 42 H 1.08997 * 117.50461 * 214.98390 * 23 21 2 43 43 H 1.09007 * 117.49535 * 0.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5377 -0.0108 -2.4798 6 8 0.8401 0.9751 -2.3684 7 7 1.8678 -0.4681 -3.7038 8 6 1.3800 0.2229 -4.9000 9 6 1.9573 -0.4483 -6.1478 10 7 3.3293 -0.0676 -6.4924 11 6 3.6115 1.2222 -6.8553 12 1 2.8155 1.9482 -6.9315 13 6 4.9206 1.5967 -7.1255 14 7 5.8907 0.7121 -7.0324 15 14 5.3054 3.3562 -7.6213 16 1 5.5878 4.1621 -6.4065 17 1 6.4932 3.3709 -8.5124 18 1 4.1408 3.9341 -8.3390 19 6 0.9953 -0.7432 -7.3004 20 6 1.5298 -1.8886 -6.4370 21 6 2.0399 -0.7214 1.2492 22 6 1.0325 -1.5534 2.0452 23 6 1.5400 -0.2227 2.6065 24 1 -0.3634 -1.0275 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 2.9704 1.4235 0.0004 28 1 1.6766 -1.7489 -1.2494 29 1 3.1300 -0.7216 -1.2491 30 1 2.4290 -1.2542 -3.7928 31 1 0.2916 0.1719 -4.9306 32 1 1.6941 1.2663 -4.8704 33 1 4.0380 -0.7294 -6.4636 34 1 6.8055 0.9739 -7.2208 35 1 -0.0490 -0.4594 -7.1696 36 1 1.3834 -0.6545 -8.3151 37 1 2.2694 -2.5530 -6.8840 38 1 0.8377 -2.3581 -5.7380 39 1 3.0646 -1.0891 1.1944 40 1 0.0063 -1.5865 1.6793 41 1 1.3944 -2.4681 2.5146 42 1 2.2356 -0.2626 3.4447 43 1 0.8475 0.6191 2.6095 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754512706.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:22 Heat of formation + Delta-G solvation = -46.414621 kcal Electronic energy + Delta-G solvation = -22653.529866 eV Core-core repulsion = 19313.849967 eV Total energy + Delta-G solvation = -3339.679899 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.18838 -39.69240 -38.74044 -36.31906 -35.25192 -34.74313 -32.62790 -31.65042 -29.48625 -27.32447 -25.94731 -24.72886 -23.26885 -23.18590 -21.26173 -20.69504 -20.47136 -19.15169 -18.32516 -17.38556 -17.33898 -16.84141 -16.52036 -16.12451 -15.88982 -15.38889 -15.38206 -15.05047 -14.78332 -14.18078 -13.90883 -13.81379 -13.52904 -13.29623 -12.93628 -12.87150 -12.74003 -12.56280 -12.28764 -12.21012 -12.03906 -11.88231 -11.77141 -11.69697 -11.38737 -11.06249 -10.96871 -10.94378 -10.77362 -10.34558 -9.89255 -9.03125 -7.97707 -5.25527 1.44366 1.46067 1.53399 1.80424 2.26473 2.51849 2.83442 3.09856 3.37833 3.54851 3.63448 3.66933 3.73508 3.86623 4.02140 4.09583 4.19797 4.20946 4.30919 4.36172 4.42172 4.62804 4.77461 4.82006 4.83917 4.86275 4.94820 4.97475 5.04389 5.05320 5.06382 5.21070 5.29119 5.31802 5.38823 5.45460 5.53358 5.66564 6.25715 6.72998 6.93600 7.32034 7.44435 8.05705 8.29077 9.24742 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018966 B = 0.004000 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.982717 B = 6998.075943 C = 7786.849848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.178 3.822 3 O -0.566 6.566 4 C -0.158 4.158 5 C 0.503 3.497 6 O -0.569 6.569 7 N -0.710 5.710 8 C 0.161 3.839 9 C 0.100 3.900 10 N -0.698 5.698 11 C -0.231 4.231 12 H 0.067 0.933 13 C -0.067 4.067 14 N -0.964 5.964 15 Si 0.962 3.038 16 H -0.292 1.292 17 H -0.292 1.292 18 H -0.273 1.273 19 C -0.188 4.188 20 C -0.150 4.150 21 C -0.189 4.189 22 C -0.167 4.167 23 C -0.173 4.173 24 H 0.086 0.914 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.379 0.621 28 H 0.129 0.871 29 H 0.110 0.890 30 H 0.408 0.592 31 H 0.068 0.932 32 H 0.032 0.968 33 H 0.378 0.622 34 H 0.251 0.749 35 H 0.105 0.895 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.103 0.897 41 H 0.110 0.890 42 H 0.103 0.897 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.481 -9.967 15.866 20.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.137 3.863 3 O -0.373 6.373 4 C -0.198 4.198 5 C 0.291 3.709 6 O -0.448 6.448 7 N -0.361 5.361 8 C 0.035 3.965 9 C 0.008 3.992 10 N -0.337 5.337 11 C -0.362 4.362 12 H 0.085 0.915 13 C -0.259 4.259 14 N -0.614 5.614 15 Si 0.792 3.208 16 H -0.219 1.219 17 H -0.219 1.219 18 H -0.198 1.198 19 C -0.228 4.228 20 C -0.188 4.188 21 C -0.208 4.208 22 C -0.203 4.203 23 C -0.210 4.210 24 H 0.105 0.895 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.226 0.774 28 H 0.147 0.853 29 H 0.128 0.872 30 H 0.243 0.757 31 H 0.086 0.914 32 H 0.051 0.949 33 H 0.211 0.789 34 H 0.060 0.940 35 H 0.124 0.876 36 H 0.096 0.904 37 H 0.111 0.889 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.121 0.879 41 H 0.129 0.871 42 H 0.122 0.878 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.618 -8.944 15.883 21.095 hybrid contribution 1.777 0.635 -0.703 2.013 sum -8.841 -8.309 15.181 19.434 Atomic orbital electron populations 1.22077 0.93386 1.02646 1.02855 1.20356 0.94502 0.81079 0.90325 1.86670 1.26916 1.26808 1.96888 1.22430 1.03729 1.02185 0.91453 1.21128 0.80030 0.84427 0.85302 1.90654 1.39620 1.27612 1.86941 1.45904 1.53067 1.32158 1.04986 1.20880 0.96881 0.95294 0.83463 1.20363 0.86591 0.98047 0.94238 1.41812 1.03336 1.08474 1.80066 1.19398 0.92107 0.88300 1.36424 0.91526 1.25386 0.95762 1.01046 1.03735 1.69769 0.99567 1.34537 1.57529 0.85310 0.77335 0.80772 0.77414 1.21946 1.21876 1.19796 1.23392 0.99273 1.03760 0.96408 1.23153 1.03017 0.89770 1.02840 1.22966 1.00419 1.05088 0.92299 1.23212 0.99353 0.95181 1.02577 1.22897 1.03946 0.98123 0.96019 0.89514 0.92664 0.92146 0.77362 0.85327 0.87223 0.75660 0.91377 0.94909 0.78882 0.94000 0.87647 0.90370 0.88912 0.86139 0.86320 0.87899 0.87148 0.87813 0.89880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 7.18 71.98 0.52 -3.09 16 2 C 0.18 3.92 0.80 -10.79 -0.01 3.91 16 3 O -0.57 -15.89 11.85 -131.53 -1.56 -17.45 16 4 C -0.16 -3.27 4.95 29.85 0.15 -3.12 16 5 C 0.50 15.49 7.39 87.66 0.65 16.14 16 6 O -0.57 -22.43 12.96 14.42 0.19 -22.24 16 7 N -0.71 -21.66 5.52 -463.06 -2.55 -24.21 16 8 C 0.16 5.85 5.72 86.38 0.49 6.35 16 9 C 0.10 3.68 2.16 3.60 0.01 3.69 16 10 N -0.70 -33.46 5.50 -303.35 -1.67 -35.13 16 11 C -0.23 -12.63 9.53 84.04 0.80 -11.83 16 12 H 0.07 3.66 7.83 -2.91 -0.02 3.64 16 13 C -0.07 -3.78 5.50 84.86 0.47 -3.32 16 14 N -0.96 -57.43 13.06 21.65 0.28 -57.15 16 15 Si 0.96 46.63 29.55 68.60 2.03 48.65 16 16 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 17 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 18 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 19 C -0.19 -6.09 10.11 30.62 0.31 -5.78 16 20 C -0.15 -4.22 10.08 30.62 0.31 -3.91 16 21 C -0.19 -3.03 5.32 -10.80 -0.06 -3.09 16 22 C -0.17 -2.19 9.66 30.62 0.30 -1.89 16 23 C -0.17 -2.73 9.86 30.62 0.30 -2.43 16 24 H 0.09 1.56 6.74 -2.39 -0.02 1.54 16 25 H 0.05 1.28 6.96 -2.39 -0.02 1.27 16 26 H 0.06 1.88 5.51 -2.38 -0.01 1.87 16 27 H 0.38 8.30 9.05 -74.06 -0.67 7.63 16 28 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.41 10.70 8.42 -92.71 -0.78 9.91 16 31 H 0.07 2.28 7.94 -2.39 -0.02 2.26 16 32 H 0.03 1.47 7.76 -2.39 -0.02 1.46 16 33 H 0.38 19.24 8.03 -92.71 -0.74 18.50 16 34 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 35 H 0.11 2.93 8.08 -2.39 -0.02 2.91 16 36 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 37 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 39 H 0.12 1.59 8.14 -2.38 -0.02 1.57 16 40 H 0.10 1.35 5.89 -2.39 -0.01 1.33 16 41 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.08 1.57 7.28 -2.38 -0.02 1.55 16 Total: -1.00 -71.06 350.95 -0.21 -71.27 By element: Atomic # 1 Polarization: 45.80 SS G_CDS: -1.16 Total: 44.64 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: 4.23 Total: -8.39 kcal Atomic # 7 Polarization: -112.55 SS G_CDS: -3.94 Total: -116.49 kcal Atomic # 8 Polarization: -38.32 SS G_CDS: -1.37 Total: -39.69 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.65 kcal Total: -71.06 -0.21 -71.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754512706.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.856 kcal (2) G-P(sol) polarization free energy of solvation -71.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds