Wall clock time and date at job start Tue Mar 31 2020 06:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50701 * 120.00215 * 2 1 4 4 H 1.09001 * 109.47287 * 359.97438 * 3 2 1 5 5 C 1.53003 * 109.47097 * 119.99896 * 3 2 1 6 6 C 1.53000 * 109.47158 * 295.00025 * 5 3 2 7 7 C 1.53000 * 109.47248 * 239.99584 * 3 2 1 8 8 C 1.50709 * 109.47050 * 65.00206 * 7 3 2 9 9 O 1.21282 * 119.99617 * 359.97438 * 8 7 3 10 10 N 1.34767 * 120.00019 * 179.97438 * 8 7 3 11 11 C 1.46506 * 119.99718 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.46749 * 180.02562 * 11 10 8 13 13 O 1.42904 * 113.41731 * 51.80016 * 12 11 10 14 14 C 1.53504 * 114.20366 * 185.00010 * 12 11 10 15 15 N 1.47066 * 88.04678 * 87.54725 * 14 12 11 16 16 C 1.36941 * 136.05541 * 207.05070 * 15 14 12 17 17 H 1.07998 * 119.99878 * 0.02562 * 16 15 14 18 18 C 1.38809 * 119.99593 * 180.02562 * 16 15 14 19 19 N 1.31622 * 120.00459 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99771 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46854 * 60.00334 * 20 18 16 22 22 H 1.48497 * 109.47063 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47149 * 300.00143 * 20 18 16 24 24 C 1.47064 * 87.88659 * 27.09306 * 15 14 12 25 25 H 1.07999 * 119.99838 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.00486 * 179.97438 * 1 2 3 27 27 H 1.08004 * 119.99778 * 180.02562 * 2 1 3 28 28 H 1.09006 * 109.47038 * 55.00081 * 5 3 2 29 29 H 1.08991 * 109.47213 * 174.99801 * 5 3 2 30 30 H 1.09007 * 109.46922 * 59.99962 * 6 5 3 31 31 H 1.08996 * 109.47114 * 179.97438 * 6 5 3 32 32 H 1.08993 * 109.47096 * 300.00242 * 6 5 3 33 33 H 1.09000 * 109.47508 * 305.00622 * 7 3 2 34 34 H 1.08998 * 109.47495 * 184.99760 * 7 3 2 35 35 H 0.96999 * 120.00738 * 359.97438 * 10 8 7 36 36 H 1.08995 * 109.47151 * 60.00171 * 11 10 8 37 37 H 1.09002 * 109.47077 * 299.99631 * 11 10 8 38 38 H 0.96700 * 113.99553 * 313.20347 * 13 12 11 39 39 H 1.09002 * 113.46865 * 332.73821 * 14 12 11 40 40 H 1.08999 * 113.46581 * 202.35597 * 14 12 11 41 41 H 0.97000 * 120.00117 * 180.02562 * 19 18 16 42 42 H 1.08999 * 113.47096 * 87.65665 * 24 15 14 43 43 H 1.09005 * 113.46966 * 218.04058 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 -0.0005 5 6 2.9431 1.3861 1.2493 6 6 2.0564 1.4307 2.4953 7 6 2.9432 1.3861 -1.2492 8 6 2.0699 1.4300 -2.4766 9 8 0.8628 1.3991 -2.3633 10 7 2.6303 1.5037 -3.7001 11 6 1.7812 1.5458 -4.8933 12 6 2.6609 1.6270 -6.1424 13 8 3.6723 0.6185 -6.1913 14 6 1.8794 1.7986 -7.4525 15 7 1.9250 3.2517 -7.2306 16 6 1.1534 4.3273 -7.5811 17 1 0.2604 4.1820 -8.1708 18 6 1.5192 5.6044 -7.1785 19 7 2.6079 5.7816 -6.4603 20 14 0.4663 7.0717 -7.6561 21 1 -0.9018 6.8997 -7.1045 22 1 1.0685 8.3129 -7.1066 23 1 0.3947 7.1688 -9.1361 24 6 3.1645 3.0414 -6.4674 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5401 -0.9353 -0.0004 27 1 1.8499 -0.9354 -0.0004 28 1 3.5906 0.5104 1.2952 29 1 3.5540 2.2876 1.2056 30 1 1.4455 0.5290 2.5390 31 1 2.6831 1.4880 3.3853 32 1 1.4090 2.3063 2.4494 33 1 3.5906 0.5104 -1.2951 34 1 3.5541 2.2877 -1.2056 35 1 3.5957 1.5288 -3.7907 36 1 1.1332 2.4210 -4.8473 37 1 1.1710 0.6437 -4.9370 38 1 4.1626 0.5129 -5.3646 39 1 0.8717 1.3850 -7.4141 40 1 2.4338 1.4765 -8.3340 41 1 2.8632 6.6740 -6.1787 42 1 4.0619 3.0501 -7.0860 43 1 3.2499 3.6853 -5.5920 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754772618.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:27 Heat of formation + Delta-G solvation = -18.722697 kcal Electronic energy + Delta-G solvation = -22616.546894 eV Core-core repulsion = 19278.067808 eV Total energy + Delta-G solvation = -3338.479087 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.90853 -38.81727 -36.73065 -35.07653 -33.87542 -32.05175 -31.79236 -30.59174 -28.12746 -26.33319 -24.82614 -24.27234 -22.27674 -21.70788 -20.35257 -19.56570 -18.99088 -17.51437 -16.78361 -16.15713 -15.62454 -15.48597 -14.91235 -14.74797 -14.41452 -14.23594 -13.90172 -13.69335 -13.49877 -13.09930 -12.85988 -12.52015 -12.25060 -12.15227 -11.79722 -11.67941 -11.42001 -11.28822 -11.06451 -11.01137 -10.89790 -10.88649 -10.54685 -10.47520 -10.11121 -9.69998 -9.59849 -9.08327 -9.03609 -8.85901 -8.70336 -6.97861 -5.83249 -3.16875 2.47386 2.92108 3.36203 3.38381 3.41979 3.43015 4.32941 4.62711 4.66363 4.70837 4.81552 5.07097 5.14536 5.18778 5.21050 5.29906 5.31355 5.38245 5.43380 5.55948 5.65154 5.75389 5.79253 5.84344 5.96611 5.99870 6.10710 6.22682 6.28848 6.44455 6.50893 6.58016 6.68186 6.76496 6.97332 7.03910 7.10128 7.42946 7.69652 7.88419 8.02662 8.48621 8.96705 9.63315 10.53725 11.34057 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017824 B = 0.004025 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.557650 B = 6955.362590 C = 7728.818035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.152 4.152 3 C -0.045 4.045 4 H 0.082 0.918 5 C -0.116 4.116 6 C -0.151 4.151 7 C -0.135 4.135 8 C 0.511 3.489 9 O -0.532 6.532 10 N -0.728 5.728 11 C 0.130 3.870 12 C 0.050 3.950 13 O -0.551 6.551 14 C 0.138 3.862 15 N -0.602 5.602 16 C -0.219 4.219 17 H 0.084 0.916 18 C -0.005 4.005 19 N -0.919 5.919 20 Si 0.915 3.085 21 H -0.283 1.283 22 H -0.289 1.289 23 H -0.284 1.284 24 C 0.138 3.862 25 H 0.096 0.904 26 H 0.088 0.912 27 H 0.100 0.900 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.394 0.606 36 H 0.093 0.907 37 H 0.065 0.935 38 H 0.362 0.638 39 H 0.048 0.952 40 H 0.047 0.953 41 H 0.255 0.745 42 H 0.033 0.967 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.480 -11.059 14.197 18.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.170 4.170 3 C -0.064 4.064 4 H 0.100 0.900 5 C -0.153 4.153 6 C -0.208 4.208 7 C -0.175 4.175 8 C 0.297 3.703 9 O -0.408 6.408 10 N -0.380 5.380 11 C 0.007 3.993 12 C 0.008 3.992 13 O -0.355 6.355 14 C 0.011 3.989 15 N -0.329 5.329 16 C -0.346 4.346 17 H 0.102 0.898 18 C -0.202 4.202 19 N -0.566 5.566 20 Si 0.745 3.255 21 H -0.209 1.209 22 H -0.215 1.215 23 H -0.210 1.210 24 C 0.011 3.989 25 H 0.114 0.886 26 H 0.107 0.893 27 H 0.118 0.882 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.228 0.772 36 H 0.111 0.889 37 H 0.083 0.917 38 H 0.208 0.792 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.051 0.949 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.266 -10.773 13.637 17.526 hybrid contribution 0.330 0.913 -0.021 0.971 sum 2.595 -9.861 13.616 17.011 Atomic orbital electron populations 1.23697 0.95974 1.01282 0.99116 1.22610 0.95967 0.97000 1.01410 1.20155 0.96629 0.97117 0.92466 0.89988 1.21539 0.97852 1.01921 0.94031 1.21759 0.99835 1.02156 0.97093 1.21717 0.98714 1.04253 0.92780 1.20572 0.89237 0.76122 0.84366 1.90710 1.14790 1.48808 1.86504 1.45936 1.10159 1.75654 1.06297 1.21467 0.92965 1.03148 0.81746 1.23877 0.89825 0.89750 0.95787 1.86574 1.51078 1.59089 1.38732 1.22329 0.96811 0.86787 0.92971 1.45200 1.25120 1.00693 1.61911 1.18856 1.03178 0.83602 1.28964 0.89830 1.24803 0.97798 0.97259 1.00297 1.69809 1.24782 1.21452 1.40508 0.86152 0.79491 0.81793 0.78061 1.20897 1.21491 1.21048 1.22740 0.89947 0.89723 0.96467 0.88583 0.89346 0.88222 0.91922 0.91756 0.92457 0.93021 0.92762 0.89048 0.88700 0.77240 0.88922 0.91664 0.79170 0.93392 0.93592 0.93530 0.94925 0.90722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 13.22 29.02 0.38 -1.59 16 2 C -0.15 -1.69 6.76 -36.02 -0.24 -1.94 16 3 C -0.04 -0.48 1.82 -91.77 -0.17 -0.64 16 4 H 0.08 1.04 7.60 -51.93 -0.39 0.65 16 5 C -0.12 -0.96 5.39 -26.73 -0.14 -1.11 16 6 C -0.15 -1.24 9.73 37.16 0.36 -0.87 16 7 C -0.13 -1.39 5.16 -27.88 -0.14 -1.53 16 8 C 0.51 7.51 7.58 -10.99 -0.08 7.42 16 9 O -0.53 -9.81 14.17 5.56 0.08 -9.73 16 10 N -0.73 -10.42 5.32 -60.29 -0.32 -10.74 16 11 C 0.13 2.33 5.32 -4.04 -0.02 2.31 16 12 C 0.05 0.93 1.74 -90.04 -0.16 0.77 16 13 O -0.55 -8.94 13.56 -35.23 -0.48 -9.42 16 14 C 0.14 2.92 8.10 -8.50 -0.07 2.85 16 15 N -0.60 -15.37 3.57 -184.54 -0.66 -16.02 16 16 C -0.22 -6.12 10.75 -15.06 -0.16 -6.29 16 17 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16 18 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 19 N -0.92 -26.91 11.51 55.49 0.64 -26.27 16 20 Si 0.92 22.11 29.55 -169.99 -5.02 17.09 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 C 0.14 3.17 6.81 -8.44 -0.06 3.12 16 25 H 0.10 1.26 7.83 -52.49 -0.41 0.85 16 26 H 0.09 0.96 8.06 -52.49 -0.42 0.53 16 27 H 0.10 0.99 8.06 -52.48 -0.42 0.57 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.48 7.38 -51.92 -0.38 0.10 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.39 4.47 7.24 -40.82 -0.30 4.18 16 36 H 0.09 2.03 7.94 -51.93 -0.41 1.62 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.36 4.26 7.50 45.56 0.34 4.60 16 39 H 0.05 0.96 8.12 -51.93 -0.42 0.54 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.07 1.87 7.10 -51.93 -0.37 1.50 16 LS Contribution 353.10 15.07 5.32 5.32 Total: -1.00 -32.86 353.10 -7.58 -40.44 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -6.54 Total: 7.06 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -0.60 Total: 2.28 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: -0.34 Total: -53.04 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.40 Total: -19.15 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.86 -7.58 -40.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754772618.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.721 kcal (2) G-P(sol) polarization free energy of solvation -32.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds